Wall clock time and date at job start Tue Mar 31 2020 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86798 * 119.99671 * 2 1 4 4 H 1.48501 * 109.47219 * 240.00374 * 3 2 1 5 5 H 1.48495 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47046 * 120.00382 * 3 2 1 7 7 C 1.40033 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00225 * 170.15948 * 7 2 1 9 9 C 1.41547 * 119.99671 * 350.15963 * 7 2 1 10 10 C 1.41183 * 120.99265 * 151.71098 * 9 7 2 11 11 C 1.37584 * 119.01301 * 179.97438 * 10 9 7 12 12 N 1.32087 * 121.11185 * 359.73587 * 11 10 9 13 13 C 1.32472 * 122.22485 * 0.53687 * 12 11 10 14 14 N 1.39473 * 119.57321 * 179.74659 * 13 12 11 15 15 C 1.34771 * 120.00428 * 5.09258 * 14 13 12 16 16 O 1.21280 * 119.99894 * 354.98160 * 15 14 13 17 17 C 1.50701 * 120.00212 * 174.98212 * 15 14 13 18 18 H 1.08991 * 110.04248 * 299.99410 * 17 15 14 19 19 C 1.54011 * 110.05699 * 61.45553 * 17 15 14 20 20 C 1.54313 * 106.61987 * 119.69282 * 19 17 15 21 21 C 1.55068 * 104.22897 * 336.56503 * 20 19 17 22 22 C 1.53643 * 110.10433 * 178.50112 * 17 15 14 23 23 O 1.43071 * 110.64412 * 144.84474 * 22 17 15 24 24 C 1.44945 * 104.61147 * 213.68285 * 23 22 17 25 25 C 1.54973 * 101.82345 * 35.41069 * 24 23 22 26 26 O 1.42689 * 110.87394 * 22.98544 * 22 17 15 27 27 C 1.38592 * 120.84454 * 359.46490 * 13 12 11 28 28 H 0.96996 * 120.00465 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.49272 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.44610 * 179.97438 * 11 10 9 31 31 H 0.97006 * 119.99379 * 185.09219 * 14 13 12 32 32 H 1.09003 * 110.03426 * 238.99358 * 19 17 15 33 33 H 1.08997 * 110.03821 * 0.38633 * 19 17 15 34 34 H 1.09004 * 110.47592 * 95.22722 * 20 19 17 35 35 H 1.09006 * 110.47376 * 217.83510 * 20 19 17 36 36 H 1.09001 * 110.72321 * 278.96158 * 21 20 19 37 37 H 1.09001 * 110.77695 * 155.59243 * 21 20 19 38 38 H 1.09003 * 110.95605 * 277.28473 * 24 23 22 39 39 H 1.08993 * 110.99358 * 153.56091 * 24 23 22 40 40 H 1.08997 * 110.69237 * 206.43205 * 25 24 23 41 41 H 1.09002 * 110.83395 * 83.30309 * 25 24 23 42 42 H 1.07999 * 120.60653 * 180.27587 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0757 -1.2195 -0.1604 9 6 1.3155 -2.4296 0.2084 10 6 1.7913 -3.6401 -0.3407 11 6 1.0866 -4.7993 -0.1115 12 7 -0.0172 -4.7949 0.6140 13 6 -0.5079 -3.6857 1.1467 14 7 -1.6808 -3.7440 1.8991 15 6 -2.2514 -4.9352 2.1668 16 8 -1.7975 -5.9483 1.6785 17 6 -3.4533 -5.0085 3.0730 18 1 -3.2024 -4.6170 4.0587 19 6 -4.6208 -4.2069 2.4677 20 6 -5.7764 -5.2062 2.2501 21 6 -5.0745 -6.5856 2.1546 22 6 -3.9381 -6.4617 3.1907 23 8 -4.4368 -6.7220 4.5062 24 6 -4.0932 -8.1071 4.7600 25 6 -2.7272 -8.2327 4.0390 26 8 -2.8847 -7.3752 2.8880 27 6 0.1324 -2.4693 0.9707 28 1 -0.4850 0.8400 0.0004 29 1 2.6950 -3.6559 -0.9319 30 1 1.4440 -5.7292 -0.5286 31 1 -2.0859 -2.9269 2.2298 32 1 -4.9312 -3.4213 3.1566 33 1 -4.3200 -3.7706 1.5152 34 1 -6.4627 -5.1856 3.0967 35 1 -6.3053 -4.9816 1.3238 36 1 -4.6702 -6.7442 1.1549 37 1 -5.7601 -7.3880 2.4271 38 1 -4.8299 -8.7786 4.3190 39 1 -3.9886 -8.2940 5.8287 40 1 -2.5478 -9.2625 3.7304 41 1 -1.9180 -7.8766 4.6767 42 1 -0.2687 -1.5681 1.4105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807082578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:18 Heat of formation + Delta-G solvation = -80.037551 kcal Electronic energy + Delta-G solvation = -27197.547321 eV Core-core repulsion = 23335.897907 eV Total energy + Delta-G solvation = -3861.649414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04506 -39.31135 -37.79015 -36.09096 -34.91957 -34.20021 -33.61900 -30.53808 -29.91138 -29.76157 -28.02937 -26.64235 -25.94776 -23.32526 -22.51656 -21.87488 -20.92483 -20.52949 -19.26342 -17.61876 -17.54336 -16.84250 -16.49716 -15.59192 -15.35796 -15.21206 -15.04516 -14.73465 -14.17776 -14.16350 -14.02283 -13.65926 -13.37614 -12.83210 -12.64646 -12.59222 -12.55441 -12.36078 -12.23053 -12.09967 -11.43896 -11.34754 -11.26402 -11.19618 -11.14558 -10.88783 -10.73938 -10.25136 -10.21919 -10.11202 -9.62831 -9.46120 -9.33237 -9.01912 -7.92488 -7.65315 -6.98180 -6.72178 -4.59928 2.62504 2.83114 3.02420 3.05484 3.23822 3.24048 3.54392 3.79654 3.87840 4.02836 4.35535 4.47659 4.56759 4.73002 4.80102 4.92987 5.03167 5.22351 5.28621 5.32419 5.41075 5.48888 5.59129 5.67626 5.72713 5.74382 5.80579 5.91694 5.94036 6.03221 6.09319 6.24857 6.62588 6.70266 6.83163 6.99430 7.14675 7.24956 7.42164 7.51651 7.83222 7.99989 8.26995 8.47102 8.74238 8.78508 9.01900 9.72844 10.13725 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.003332 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.243880 B = 8402.432306 C = 9110.296885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.145 3.855 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.550 5.550 13 C 0.339 3.661 14 N -0.661 5.661 15 C 0.503 3.497 16 O -0.442 6.442 17 C -0.122 4.122 18 H 0.106 0.894 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.141 4.141 22 C 0.267 3.733 23 O -0.367 6.367 24 C 0.015 3.985 25 C 0.010 3.990 26 O -0.319 6.319 27 C -0.238 4.238 28 H 0.281 0.719 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 -7.777 8.537 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.136 3.864 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.269 5.269 13 C 0.114 3.886 14 N -0.308 5.308 15 C 0.286 3.714 16 O -0.308 6.308 17 C -0.144 4.144 18 H 0.124 0.876 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.179 4.179 22 C 0.189 3.811 23 O -0.288 6.288 24 C -0.061 4.061 25 C -0.067 4.067 26 O -0.239 6.239 27 C -0.264 4.264 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.240 0.760 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.369 -9.073 8.295 16.744 hybrid contribution 0.599 1.986 0.146 2.079 sum -10.770 -7.087 8.442 15.410 Atomic orbital electron populations 1.69739 1.07518 1.29246 1.35836 1.25918 0.94863 1.01308 0.92045 0.86275 0.79984 0.79916 0.79989 1.18957 1.20297 1.18834 1.19525 0.95786 0.90040 1.43701 0.90162 1.17569 0.90216 0.92213 0.86386 1.21941 1.04534 0.94648 1.09514 1.21770 0.90833 0.96458 0.94688 1.67247 1.15425 1.28133 1.16075 1.18214 0.86747 0.90866 0.92786 1.43454 1.25099 1.09034 1.53251 1.20072 0.84444 0.84147 0.82770 1.90848 1.60344 1.32893 1.46760 1.22199 0.95472 0.95710 1.00996 0.87618 1.22157 0.93661 0.97913 1.01706 1.22274 0.97216 0.93836 1.02136 1.22996 0.96574 0.98168 1.00168 1.23380 0.85750 0.89536 0.82455 1.89143 1.79452 1.27419 1.32777 1.24431 0.95802 0.83573 1.02298 1.24261 0.96994 0.96666 0.88818 1.89419 1.53073 1.46014 1.35373 1.21592 1.01491 0.95470 1.07829 0.90814 0.88025 0.85954 0.75996 0.90367 0.90485 0.90979 0.90875 0.89184 0.90767 0.90811 0.87679 0.88583 0.90987 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.78 10.83 55.55 0.60 -19.18 16 2 C 0.08 1.86 5.30 -17.34 -0.09 1.77 16 3 Si 0.91 18.12 29.57 -169.99 -5.03 13.10 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.91 9.13 -37.65 -0.34 -12.26 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.14 3.84 5.58 -106.55 -0.59 3.25 16 10 C -0.28 -7.03 9.90 -38.70 -0.38 -7.42 16 11 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.25 7.85 -12.52 -0.10 -14.35 16 13 C 0.34 8.35 7.42 -154.70 -1.15 7.20 16 14 N -0.66 -13.32 5.26 -11.49 -0.06 -13.38 16 15 C 0.50 9.84 6.81 -10.99 -0.07 9.76 16 16 O -0.44 -10.33 12.02 -19.40 -0.23 -10.57 16 17 C -0.12 -1.80 3.05 -90.91 -0.28 -2.08 16 18 H 0.11 1.45 8.07 -51.93 -0.42 1.03 16 19 C -0.12 -1.41 6.31 -25.52 -0.16 -1.58 16 20 C -0.12 -1.28 6.83 -24.95 -0.17 -1.45 16 21 C -0.14 -1.81 6.31 -24.97 -0.16 -1.96 16 22 C 0.27 3.88 1.04 -25.73 -0.03 3.85 16 23 O -0.37 -4.76 11.02 -59.03 -0.65 -5.41 16 24 C 0.02 0.15 7.96 38.20 0.30 0.46 16 25 C 0.01 0.12 8.08 38.20 0.31 0.42 16 26 O -0.32 -5.38 7.71 -67.89 -0.52 -5.90 16 27 C -0.24 -6.11 8.59 -38.48 -0.33 -6.44 16 28 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 31 H 0.41 6.83 8.60 -40.82 -0.35 6.48 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.13 3.27 6.27 -52.49 -0.33 2.94 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -32.57 345.12 -9.82 -42.40 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.69 Total: 11.93 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.34 Total: -3.82 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.44 Total: -46.91 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.41 Total: -21.89 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.57 -9.82 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807082578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.640 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds