Wall clock time and date at job start Tue Mar 31 2020 12:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86803 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47041 * 269.99482 * 3 2 1 5 5 H 1.48496 * 109.47242 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47206 * 149.99788 * 3 2 1 7 7 C 1.40033 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00393 * 193.00467 * 7 2 1 9 9 C 1.41545 * 119.99461 * 13.00575 * 7 2 1 10 10 C 1.41174 * 120.99204 * 200.96010 * 9 7 2 11 11 C 1.37594 * 119.01604 * 180.02562 * 10 9 7 12 12 N 1.32084 * 121.10792 * 359.97438 * 11 10 9 13 13 C 1.32468 * 122.22966 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.57797 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00240 * 354.17877 * 14 13 12 16 16 O 1.21285 * 119.99768 * 4.10442 * 15 14 13 17 17 C 1.50694 * 120.00438 * 184.11314 * 15 14 13 18 18 H 1.09007 * 110.03855 * 331.94519 * 17 15 14 19 19 C 1.54358 * 110.06081 * 210.48825 * 17 15 14 20 20 C 1.54999 * 104.16638 * 217.22405 * 19 17 15 21 21 C 1.54970 * 102.82162 * 37.68962 * 20 19 17 22 22 C 1.53535 * 110.05743 * 93.38921 * 17 15 14 23 23 O 1.43353 * 110.18185 * 359.89636 * 22 17 15 24 24 C 1.44884 * 104.69871 * 214.55694 * 23 22 17 25 25 C 1.54941 * 101.77556 * 35.71808 * 24 23 22 26 26 O 1.42976 * 110.37860 * 239.12862 * 22 17 15 27 27 C 1.38598 * 120.84438 * 0.27028 * 13 12 11 28 28 H 0.97005 * 119.99865 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.49633 * 0.04186 * 10 9 7 30 30 H 1.08000 * 119.44640 * 179.97438 * 11 10 9 31 31 H 0.97005 * 119.99881 * 173.89888 * 14 13 12 32 32 H 1.09003 * 110.47890 * 335.86910 * 19 17 15 33 33 H 1.08996 * 110.48549 * 98.50235 * 19 17 15 34 34 H 1.09002 * 110.70956 * 279.37057 * 20 19 17 35 35 H 1.08998 * 110.91714 * 156.11356 * 20 19 17 36 36 H 1.08997 * 110.50190 * 203.71231 * 21 20 19 37 37 H 1.09008 * 110.49519 * 81.02919 * 21 20 19 38 38 H 1.09000 * 110.96149 * 277.60494 * 24 23 22 39 39 H 1.08997 * 110.99828 * 153.86150 * 24 23 22 40 40 H 1.09002 * 110.69386 * 206.26936 * 25 24 23 41 41 H 1.09004 * 110.83948 * 83.14043 * 25 24 23 42 42 H 1.07994 * 120.60726 * 179.73083 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4389 2.6527 0.6999 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0668 -1.2247 0.2110 9 6 1.3270 -2.4229 -0.2748 10 6 1.8592 -3.6652 0.1330 11 6 1.1637 -4.8166 -0.1565 12 7 0.0139 -4.7744 -0.8052 13 6 -0.5279 -3.6352 -1.2093 14 7 -1.7446 -3.6551 -1.8907 15 6 -2.3036 -4.8314 -2.2376 16 8 -1.7873 -5.8732 -1.8927 17 6 -3.5700 -4.8522 -3.0541 18 1 -4.1506 -3.9490 -2.8659 19 6 -4.4058 -6.1016 -2.7032 20 6 -5.0177 -6.5413 -4.0577 21 6 -3.8694 -6.2627 -5.0604 22 6 -3.2317 -4.9588 -4.5479 23 8 -1.8107 -5.0050 -4.7311 24 6 -1.5768 -4.2956 -5.9725 25 6 -2.6530 -3.1828 -5.9085 26 8 -3.7629 -3.8385 -5.2599 27 6 0.1019 -2.4242 -0.9690 28 1 -0.4850 0.8401 -0.0004 29 1 2.7983 -3.7113 0.6646 30 1 1.5647 -5.7708 0.1519 31 1 -2.1905 -2.8224 -2.1114 32 1 -3.7665 -6.8873 -2.3006 33 1 -5.1924 -5.8472 -1.9929 34 1 -5.8945 -5.9400 -4.2979 35 1 -5.2702 -7.6016 -4.0447 36 1 -4.2661 -6.1241 -6.0661 37 1 -3.1429 -7.0752 -5.0441 38 1 -1.7402 -4.9473 -6.8308 39 1 -0.5744 -3.8680 -5.9952 40 1 -2.9304 -2.8570 -6.9110 41 1 -2.3034 -2.3389 -5.3137 42 1 -0.3411 -1.4980 -1.3040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807082579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:22 Heat of formation + Delta-G solvation = -106.340725 kcal Electronic energy + Delta-G solvation = -27466.650551 eV Core-core repulsion = 23603.860546 eV Total energy + Delta-G solvation = -3862.790005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.22044 -40.92401 -39.53125 -37.23061 -36.15927 -36.05636 -35.45166 -32.46371 -31.30208 -30.75780 -29.70494 -27.93764 -27.55809 -24.36768 -24.04598 -23.76616 -22.10523 -21.94878 -20.81394 -19.48063 -18.81843 -18.08440 -17.54870 -17.46225 -17.03989 -16.82844 -16.22501 -16.04641 -15.80601 -15.68271 -15.29617 -14.97775 -14.84017 -14.50393 -14.36042 -14.16634 -13.91570 -13.65507 -13.37690 -13.15422 -12.91312 -12.82718 -12.70376 -12.42548 -12.32057 -12.09699 -12.05448 -11.89307 -11.64980 -11.47577 -11.17860 -11.16749 -11.00404 -10.62383 -9.95972 -9.58208 -8.86278 -8.59023 -6.59130 0.75126 1.00261 1.40361 1.53709 1.54935 1.81245 2.09837 2.19224 2.49851 2.79162 2.84674 3.33802 3.45391 3.60256 3.71416 3.78014 3.97073 4.09603 4.14822 4.25430 4.31334 4.35139 4.41581 4.54253 4.62475 4.73048 4.75323 4.84346 4.86758 4.88483 4.93593 4.94245 5.07903 5.09954 5.10948 5.25062 5.37820 5.49445 5.66393 5.91898 6.06332 6.14865 6.47217 6.61238 6.79648 6.82878 7.34312 7.85859 8.25605 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.003907 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.391642 B = 7165.371058 C = 7940.592405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.037 3.963 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.480 4.480 8 H 0.083 0.917 9 C 0.111 3.889 10 C -0.301 4.301 11 C 0.111 3.889 12 N -0.579 5.579 13 C 0.337 3.663 14 N -0.651 5.651 15 C 0.521 3.479 16 O -0.517 6.517 17 C -0.119 4.119 18 H 0.122 0.878 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.138 4.138 22 C 0.264 3.736 23 O -0.393 6.393 24 C 0.007 3.993 25 C 0.018 3.982 26 O -0.376 6.376 27 C -0.266 4.266 28 H 0.292 0.708 29 H 0.115 0.885 30 H 0.148 0.852 31 H 0.416 0.584 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.073 0.927 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -2.075 -12.936 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.511 4.511 8 H 0.102 0.898 9 C 0.103 3.897 10 C -0.325 4.325 11 C -0.043 4.043 12 N -0.299 5.299 13 C 0.111 3.889 14 N -0.296 5.296 15 C 0.307 3.693 16 O -0.390 6.390 17 C -0.141 4.141 18 H 0.140 0.860 19 C -0.150 4.150 20 C -0.144 4.144 21 C -0.176 4.176 22 C 0.187 3.813 23 O -0.314 6.314 24 C -0.069 4.069 25 C -0.058 4.058 26 O -0.297 6.297 27 C -0.292 4.292 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.253 0.747 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.153 0.847 41 H 0.091 0.909 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.684 -3.554 -12.770 17.025 hybrid contribution 1.068 1.928 0.373 2.235 sum -9.617 -1.626 -12.397 15.774 Atomic orbital electron populations 1.69782 1.09019 1.30835 1.34155 1.26864 0.95653 1.04657 0.90767 0.85067 0.78929 0.75246 0.79668 1.18420 1.19010 1.18268 1.19914 0.97018 0.91237 1.42882 0.89849 1.18018 0.91266 0.93321 0.87143 1.22056 1.04463 0.93756 1.12202 1.22199 0.90241 0.97729 0.94093 1.67333 1.14660 1.27903 1.19973 1.18467 0.87112 0.90327 0.92995 1.43482 1.20212 1.10041 1.55911 1.20770 0.86076 0.83074 0.79344 1.90702 1.62876 1.32579 1.52801 1.22431 0.94121 1.04168 0.93370 0.86046 1.22407 0.98418 0.94616 0.99573 1.22441 0.97092 1.03077 0.91783 1.22924 0.98807 0.94579 1.01240 1.23691 0.79231 0.88630 0.89793 1.89424 1.22695 1.77041 1.42259 1.24650 1.01666 0.93357 0.87204 1.24431 0.85437 0.95488 1.00423 1.88849 1.31659 1.42117 1.67088 1.21770 1.01184 0.96027 1.10211 0.89671 0.86675 0.83523 0.74726 0.91722 0.88880 0.89042 0.88894 0.88232 0.90528 0.88444 0.87397 0.84702 0.90896 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.89 10.55 21.84 0.23 -39.66 16 2 C 0.04 1.79 5.30 85.29 0.45 2.24 16 3 Si 0.99 35.91 29.58 68.60 2.03 37.94 16 4 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 5 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.48 -25.22 9.15 23.52 0.22 -25.00 16 8 H 0.08 4.19 7.88 -2.91 -0.02 4.16 16 9 C 0.11 6.08 5.65 -21.11 -0.12 5.96 16 10 C -0.30 -15.49 9.90 22.84 0.23 -15.26 16 11 C 0.11 5.64 11.15 84.50 0.94 6.58 16 12 N -0.58 -31.46 7.85 -193.53 -1.52 -32.98 16 13 C 0.34 17.43 7.41 132.75 0.98 18.42 16 14 N -0.65 -27.80 5.39 -308.66 -1.66 -29.47 16 15 C 0.52 21.34 5.54 87.66 0.49 21.82 16 16 O -0.52 -25.63 13.97 -3.04 -0.04 -25.67 16 17 C -0.12 -3.52 3.11 -10.90 -0.03 -3.56 16 18 H 0.12 3.11 7.96 -2.38 -0.02 3.09 16 19 C -0.11 -2.83 6.33 31.74 0.20 -2.63 16 20 C -0.11 -1.98 6.91 31.95 0.22 -1.76 16 21 C -0.14 -3.01 6.29 31.58 0.20 -2.81 16 22 C 0.26 7.17 1.34 31.09 0.04 7.21 16 23 O -0.39 -12.90 9.45 -125.70 -1.19 -14.09 16 24 C 0.01 0.15 7.94 72.65 0.58 0.73 16 25 C 0.02 0.35 8.08 72.65 0.59 0.94 16 26 O -0.38 -8.90 10.77 -126.22 -1.36 -10.26 16 27 C -0.27 -14.24 8.66 22.99 0.20 -14.04 16 28 H 0.29 12.75 8.29 -92.70 -0.77 11.98 16 29 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 30 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 31 H 0.42 15.15 8.70 -92.70 -0.81 14.35 16 32 H 0.06 2.02 6.88 -2.39 -0.02 2.00 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 37 H 0.08 1.87 8.07 -2.38 -0.02 1.85 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.13 7.05 5.85 -2.91 -0.02 7.03 16 Total: -1.00 -72.74 346.45 1.91 -70.82 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: 0.25 Total: 44.52 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.18 Total: -1.16 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -2.95 Total: -102.11 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -2.59 Total: -50.01 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -72.74 1.91 -70.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807082579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.518 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds