Wall clock time and date at job start Tue Mar 31 2020 12:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47100 * 240.00106 * 3 2 1 5 5 H 1.48499 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47008 * 120.00029 * 3 2 1 7 7 C 1.38947 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00298 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00560 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99769 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00303 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47314 * 179.97438 * 12 10 9 14 14 C 1.34226 * 117.00261 * 179.97438 * 13 12 10 15 15 O 1.20833 * 119.99725 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00283 * 180.02562 * 14 13 12 17 17 C 1.50702 * 110.02009 * 59.29812 * 16 14 13 18 18 C 1.38671 * 120.41367 * 5.92078 * 17 16 14 19 19 C 1.38632 * 118.41842 * 179.78331 * 18 17 16 20 20 C 1.38227 * 119.15957 * 0.47131 * 19 18 17 21 21 N 1.31852 * 120.76358 * 359.77273 * 20 19 18 22 22 C 1.31885 * 121.72760 * 0.02562 * 21 20 19 23 23 C 1.53883 * 110.02972 * 297.90783 * 16 14 13 24 24 C 1.54373 * 106.54166 * 240.72966 * 23 16 14 25 25 C 1.54886 * 104.22197 * 23.57284 * 24 23 16 26 26 C 1.54265 * 110.03638 * 180.69037 * 16 14 13 27 27 H 0.97001 * 120.00305 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46672 * 299.99311 * 12 10 9 30 30 H 1.08995 * 109.47656 * 59.99532 * 12 10 9 31 31 H 1.07996 * 120.79390 * 0.02898 * 18 17 16 32 32 H 1.07998 * 120.42022 * 180.26888 * 19 18 17 33 33 H 1.08003 * 119.61758 * 179.79215 * 20 19 18 34 34 H 1.08004 * 119.61953 * 180.02562 * 22 21 20 35 35 H 1.08996 * 110.03258 * 0.02562 * 23 16 14 36 36 H 1.09007 * 110.03126 * 121.43193 * 23 16 14 37 37 H 1.09011 * 110.46021 * 264.89565 * 24 23 16 38 38 H 1.08998 * 110.60032 * 142.32739 * 24 23 16 39 39 H 1.08989 * 110.75788 * 203.76026 * 25 24 23 40 40 H 1.09004 * 110.90911 * 80.46004 * 25 24 23 41 41 H 1.08996 * 110.49121 * 214.34922 * 26 16 14 42 42 H 1.09000 * 110.48396 * 336.86839 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2102 -3.5578 -0.0031 12 6 1.2437 -4.8629 -0.0044 13 8 2.1873 -5.9666 -0.0059 14 6 1.6743 -7.2070 -0.0070 15 8 0.4763 -7.3653 -0.0063 16 6 2.5922 -8.4021 -0.0080 17 6 3.4797 -8.3719 1.2096 18 6 3.2931 -7.4099 2.1907 19 6 4.1303 -7.4232 3.2956 20 6 5.1226 -8.3821 3.3772 21 7 5.2741 -9.2788 2.4224 22 6 4.4937 -9.2986 1.3594 23 6 3.4500 -8.4067 -1.2855 24 6 3.1124 -9.7124 -2.0368 25 6 1.7007 -10.0919 -1.5249 26 6 1.7649 -9.7040 -0.0267 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3907 -0.0016 29 1 0.6168 -4.9217 0.8854 30 1 0.6173 -4.9197 -0.8946 31 1 2.5116 -6.6703 2.0983 32 1 4.0110 -6.6917 4.0810 33 1 5.7811 -8.3973 4.2330 34 1 4.6479 -10.0488 0.5979 35 1 3.2026 -7.5444 -1.9045 36 1 4.5083 -8.3881 -1.0248 37 1 3.8314 -10.4927 -1.7868 38 1 3.0948 -9.5419 -3.1133 39 1 1.5227 -11.1610 -1.6398 40 1 0.9321 -9.5161 -2.0405 41 1 2.2661 -10.4829 0.5479 42 1 0.7639 -9.5255 0.3663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808567012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:28 Heat of formation + Delta-G solvation = -113.119262 kcal Electronic energy + Delta-G solvation = -26730.251822 eV Core-core repulsion = 22867.167877 eV Total energy + Delta-G solvation = -3863.083945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53833 -41.01098 -40.13378 -38.79189 -37.46955 -36.06898 -33.95756 -33.44869 -32.66815 -30.47458 -29.74551 -29.14633 -26.68797 -25.11380 -24.10289 -23.39668 -21.63046 -21.48073 -20.70558 -20.11151 -19.12614 -18.33848 -18.04626 -17.61428 -17.40334 -16.90857 -16.62865 -16.44468 -15.91461 -15.79277 -15.64025 -15.04478 -14.95549 -14.57436 -14.36355 -14.05245 -13.98349 -13.75306 -13.58366 -13.44840 -12.96104 -12.80544 -12.56017 -12.51836 -12.15321 -12.13150 -12.07593 -12.01349 -11.89804 -11.65233 -11.60158 -11.42408 -10.81360 -10.56059 -10.49243 -10.15224 -9.94421 -8.55128 -6.06142 0.05658 0.23017 0.92646 1.25152 1.35134 1.42142 1.53337 1.83176 2.26741 2.74243 2.92281 3.10053 3.22013 3.34064 3.51699 3.60403 3.69983 3.86945 3.96078 3.97803 4.06443 4.10999 4.16021 4.25422 4.39943 4.41138 4.46664 4.51902 4.70175 4.77029 4.89276 5.02465 5.04510 5.05549 5.19015 5.21451 5.23900 5.27598 5.33877 5.44396 5.67093 5.85275 6.40191 6.52243 6.92933 6.99541 7.35821 7.89284 8.61630 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003307 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.596812 B = 8465.745013 C = 9443.274271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.556 5.556 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.067 3.933 13 O -0.337 6.337 14 C 0.469 3.531 15 O -0.520 6.520 16 C -0.003 4.003 17 C -0.129 4.129 18 C -0.086 4.086 19 C -0.170 4.170 20 C 0.095 3.905 21 N -0.496 5.496 22 C 0.114 3.886 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.105 4.105 27 H 0.281 0.719 28 H 0.399 0.601 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -20.830 1.101 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.194 5.194 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.010 4.010 13 O -0.252 6.252 14 C 0.312 3.688 15 O -0.409 6.409 16 C -0.005 4.005 17 C -0.131 4.131 18 C -0.112 4.112 19 C -0.189 4.189 20 C -0.061 4.061 21 N -0.205 5.205 22 C -0.043 4.043 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.142 4.142 27 H 0.091 0.909 28 H 0.234 0.766 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.169 0.831 33 H 0.203 0.797 34 H 0.202 0.798 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.698 -21.295 1.189 21.840 hybrid contribution -1.398 2.255 0.033 2.653 sum 3.300 -19.040 1.223 19.363 Atomic orbital electron populations 1.69662 1.06963 1.29853 1.48974 1.26115 0.96562 1.02553 0.95537 0.84930 0.77783 0.76136 0.79169 1.19484 1.19302 1.19454 1.19683 0.92934 0.83357 1.50890 0.89783 1.41728 1.09513 1.04169 1.63961 1.20016 0.88067 0.85249 0.84316 1.90537 1.15328 1.87622 1.56686 1.22555 0.90365 0.82915 1.05192 1.86631 1.40501 1.14825 1.83205 1.24110 0.88840 0.84609 0.71202 1.90623 1.17383 1.86664 1.46223 1.20260 0.93421 0.90889 0.95920 1.20510 0.98845 0.98193 0.95580 1.21702 0.98926 0.96482 0.94116 1.22379 0.96574 1.00974 0.99011 1.23248 0.95652 0.89695 0.97521 1.67803 1.26215 1.24210 1.02237 1.22853 0.89242 0.96660 0.95541 1.22406 0.99753 1.00379 0.92671 1.22458 0.97156 0.95557 1.00159 1.22537 0.97180 1.02777 0.93446 1.22586 0.99678 0.92416 0.99495 0.90903 0.76625 0.87776 0.87746 0.87107 0.83116 0.79704 0.79767 0.92411 0.89277 0.88313 0.90171 0.88174 0.92680 0.87816 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.42 13.05 21.66 0.28 -48.13 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 1.00 41.85 29.55 68.60 2.03 43.88 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.55 5.29 -306.99 -1.62 -30.17 16 10 C 0.44 21.39 7.86 87.66 0.69 22.08 16 11 O -0.62 -35.01 16.08 15.71 0.25 -34.76 16 12 C 0.07 2.55 5.94 71.24 0.42 2.98 16 13 O -0.34 -12.60 8.19 -45.02 -0.37 -12.97 16 14 C 0.47 14.85 5.06 71.23 0.36 15.21 16 15 O -0.52 -17.75 15.13 21.94 0.33 -17.42 16 16 C 0.00 -0.07 0.72 -52.95 -0.04 -0.11 16 17 C -0.13 -3.17 4.67 -19.77 -0.09 -3.26 16 18 C -0.09 -2.42 8.93 22.47 0.20 -2.22 16 19 C -0.17 -4.02 10.11 22.36 0.23 -3.79 16 20 C 0.09 1.99 11.18 84.69 0.95 2.94 16 21 N -0.50 -11.32 10.36 -195.84 -2.03 -13.35 16 22 C 0.11 2.37 9.25 84.67 0.78 3.15 16 23 C -0.11 -2.37 5.72 31.36 0.18 -2.19 16 24 C -0.12 -1.57 6.83 31.70 0.22 -1.35 16 25 C -0.12 -1.82 6.91 31.89 0.22 -1.60 16 26 C -0.10 -1.94 5.64 31.67 0.18 -1.76 16 27 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.40 19.34 7.90 -92.70 -0.73 18.61 16 29 H 0.10 3.57 8.13 -2.38 -0.02 3.55 16 30 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 31 H 0.11 3.54 5.94 -2.91 -0.02 3.52 16 32 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.19 2.60 7.84 -2.91 -0.02 2.58 16 35 H 0.06 1.45 7.64 -2.39 -0.02 1.43 16 36 H 0.09 1.74 7.03 -2.38 -0.02 1.72 16 37 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.46 7.35 -2.39 -0.02 1.45 16 42 H 0.07 1.62 6.83 -2.39 -0.02 1.60 16 Total: -1.00 -71.00 353.93 4.77 -66.23 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.32 Total: 34.72 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.58 Total: 11.96 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -3.37 Total: -91.65 kcal Atomic # 8 Polarization: -65.36 SS G_CDS: 0.22 Total: -65.14 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -71.00 4.77 -66.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808567012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.894 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds