Wall clock time and date at job start Tue Mar 31 2020 12:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99916 * 2 1 4 4 H 1.48505 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47199 * 300.00057 * 3 2 1 6 6 H 1.48500 * 109.47257 * 60.00176 * 3 2 1 7 7 C 1.37876 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00003 * 185.03700 * 7 2 1 9 9 C 1.50699 * 120.00051 * 4.76509 * 7 2 1 10 10 O 1.45200 * 112.85109 * 295.22170 * 9 7 2 11 11 C 1.34221 * 116.99942 * 300.87874 * 10 9 7 12 12 O 1.20826 * 120.00188 * 354.75760 * 11 10 9 13 13 C 1.50703 * 119.99989 * 174.76152 * 11 10 9 14 14 N 1.46497 * 109.47092 * 179.97438 * 13 11 10 15 15 C 1.34784 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21582 * 120.00270 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99323 * 179.97438 * 15 14 13 18 18 C 1.39944 * 119.99571 * 185.23412 * 17 15 14 19 19 C 1.38865 * 120.07098 * 214.02988 * 18 17 15 20 20 C 1.38112 * 119.93308 * 179.76813 * 19 18 17 21 21 C 1.38288 * 120.06535 * 0.51198 * 20 19 18 22 22 C 1.38280 * 120.14254 * 359.73908 * 21 20 19 23 23 C 1.38116 * 120.06604 * 0.02562 * 22 21 20 24 24 C 1.53784 * 113.61631 * 164.02797 * 9 7 2 25 25 C 1.53952 * 87.02014 * 220.05147 * 24 9 7 26 26 C 1.53779 * 113.61445 * 66.41929 * 9 7 2 27 27 H 0.96994 * 120.00191 * 4.99854 * 1 2 3 28 28 H 1.09002 * 109.46815 * 299.99969 * 13 11 10 29 29 H 1.08997 * 109.47226 * 59.99777 * 13 11 10 30 30 H 0.96997 * 120.00298 * 359.97438 * 14 13 11 31 31 H 0.96994 * 119.99978 * 5.23604 * 17 15 14 32 32 H 1.08009 * 120.03233 * 359.97438 * 19 18 17 33 33 H 1.07994 * 119.97012 * 180.24871 * 20 19 18 34 34 H 1.08004 * 119.92596 * 179.72469 * 21 20 19 35 35 H 1.07998 * 119.96286 * 180.02562 * 22 21 20 36 36 H 1.08006 * 120.03001 * 179.97438 * 23 22 21 37 37 H 1.09006 * 113.61371 * 334.56882 * 24 9 7 38 38 H 1.08998 * 113.61367 * 105.46734 * 24 9 7 39 39 H 1.09003 * 113.53356 * 270.81205 * 25 24 9 40 40 H 1.09003 * 113.74460 * 139.94529 * 25 24 9 41 41 H 1.08996 * 113.61674 * 254.52705 * 26 9 7 42 42 H 1.09001 * 113.61470 * 25.35446 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0827 9 6 1.2550 -2.4969 -0.1073 10 8 0.3945 -2.7486 1.0349 11 6 0.9827 -2.8062 2.2399 12 8 2.1863 -2.7464 2.3283 13 6 0.1420 -2.9457 3.4829 14 7 1.0134 -2.9862 4.6598 15 6 0.4780 -3.1075 5.8908 16 8 -0.7281 -3.1829 6.0245 17 7 1.2798 -3.1453 6.9736 18 6 0.7340 -3.3809 8.2404 19 6 1.2856 -2.7720 9.3600 20 6 0.7417 -3.0027 10.6083 21 6 -0.3446 -3.8475 10.7454 22 6 -0.8929 -4.4594 9.6332 23 6 -0.3565 -4.2289 8.3815 24 6 2.1476 -3.6921 -0.4812 25 6 0.9967 -4.1651 -1.3878 26 6 0.5542 -2.6941 -1.4618 27 1 -0.4850 0.8368 -0.0732 28 1 -0.5352 -2.0951 3.5608 29 1 -0.4372 -3.8675 3.4282 30 1 1.9756 -2.9257 4.5532 31 1 2.2351 -3.0092 6.8746 32 1 2.1371 -2.1159 9.2541 33 1 1.1677 -2.5263 11.4788 34 1 -0.7654 -4.0298 11.7232 35 1 -1.7415 -5.1183 9.7435 36 1 -0.7851 -4.7075 7.5133 37 1 3.0472 -3.4108 -1.0287 38 1 2.3512 -4.3629 0.3534 39 1 0.2805 -4.8114 -0.8804 40 1 1.3289 -4.5698 -2.3437 41 1 -0.5266 -2.5606 -1.4178 42 1 1.0165 -2.1384 -2.2776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:29 Heat of formation + Delta-G solvation = -55.053939 kcal Electronic energy + Delta-G solvation = -26083.026198 eV Core-core repulsion = 22222.460155 eV Total energy + Delta-G solvation = -3860.566044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70716 -39.58340 -38.65924 -37.22514 -34.85282 -34.51056 -34.05787 -32.43728 -31.01181 -29.86254 -27.63918 -26.41878 -24.63155 -23.22830 -22.79071 -22.39968 -20.84937 -20.42940 -18.81674 -18.23394 -17.87747 -17.05257 -16.39663 -15.88789 -15.51454 -15.40682 -15.16505 -14.78225 -14.69313 -14.36959 -14.16999 -14.03756 -13.71050 -13.42808 -13.19041 -12.94784 -12.41492 -12.07228 -11.81045 -11.61213 -11.40544 -11.37774 -11.22023 -10.97241 -10.50856 -10.49231 -10.22815 -10.17874 -10.08103 -10.00638 -9.50162 -9.11469 -9.03164 -8.87974 -8.62105 -8.48119 -8.17968 -6.17771 -4.29917 1.19944 1.30512 2.43097 3.06403 3.18330 3.23314 3.29676 3.34576 3.74612 3.76069 4.22025 4.30492 4.77509 4.83655 5.04099 5.11537 5.28680 5.40758 5.48072 5.48851 5.62097 5.65080 5.76710 5.78894 5.89154 6.00573 6.18084 6.21634 6.29246 6.39338 6.40174 6.40922 6.48467 6.72473 6.76521 6.83635 6.95643 7.10664 7.19320 7.42908 7.67608 7.78344 7.87191 8.18165 8.45991 8.73966 8.98474 9.40592 10.86407 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002864 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.969524 B = 9773.312672 C =10613.467642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.233 3.767 10 O -0.331 6.331 11 C 0.464 3.536 12 O -0.511 6.511 13 C 0.140 3.860 14 N -0.726 5.726 15 C 0.708 3.292 16 O -0.574 6.574 17 N -0.688 5.688 18 C 0.173 3.827 19 C -0.151 4.151 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.151 4.151 25 C -0.153 4.153 26 C -0.095 4.095 27 H 0.263 0.737 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.409 0.591 31 H 0.408 0.592 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -7.750 14.518 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.200 3.800 10 O -0.246 6.246 11 C 0.305 3.695 12 O -0.400 6.400 13 C 0.014 3.986 14 N -0.384 5.384 15 C 0.408 3.592 16 O -0.451 6.451 17 N -0.336 5.336 18 C 0.078 3.922 19 C -0.172 4.172 20 C -0.120 4.120 21 C -0.162 4.162 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.189 4.189 25 C -0.191 4.191 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.247 0.753 31 H 0.244 0.756 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.222 -7.700 14.509 16.427 hybrid contribution 1.436 1.241 -0.158 1.904 sum 1.658 -6.459 14.350 15.824 Atomic orbital electron populations 1.70055 1.05807 1.27171 1.46751 1.25100 0.94880 0.99375 0.93839 0.86546 0.80470 0.83413 0.77734 1.19501 1.20682 1.20929 1.21279 0.93551 0.89320 1.51755 0.91472 1.20693 0.86448 0.92219 0.80687 1.86395 1.44117 1.79353 1.14732 1.22606 0.87355 0.73610 0.85898 1.90540 1.15871 1.46181 1.87415 1.20559 0.91781 1.05263 0.80952 1.44800 1.11501 1.78272 1.03824 1.15723 0.85254 0.78044 0.80173 1.90953 1.12215 1.56766 1.85138 1.42605 1.10914 1.75514 1.04559 1.17520 0.95826 0.95525 0.83330 1.20884 1.02784 1.01475 0.92059 1.20900 0.96304 0.98251 0.96547 1.21106 0.97426 0.98998 0.98687 1.21047 0.99452 0.99422 0.92010 1.21226 0.96853 0.97674 0.98394 1.23461 0.97640 0.99042 0.98708 1.23037 0.98960 0.98034 0.99019 1.22730 1.00740 0.92871 0.96959 0.92707 0.87623 0.88201 0.75346 0.75599 0.85767 0.85844 0.86176 0.85823 0.84619 0.90090 0.93023 0.91294 0.92833 0.91765 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 12.79 55.43 0.71 -22.84 16 2 C 0.07 1.97 5.38 -17.82 -0.10 1.88 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.89 7.15 -34.44 -0.25 -14.14 16 8 H 0.07 1.85 7.82 -52.48 -0.41 1.44 16 9 C 0.23 5.62 0.33 -90.96 -0.03 5.59 16 10 O -0.33 -7.88 9.85 -39.23 -0.39 -8.26 16 11 C 0.46 9.93 7.47 36.01 0.27 10.20 16 12 O -0.51 -11.65 13.84 -18.75 -0.26 -11.91 16 13 C 0.14 2.44 6.27 -5.19 -0.03 2.40 16 14 N -0.73 -11.09 5.53 -66.41 -0.37 -11.45 16 15 C 0.71 10.81 8.30 -86.90 -0.72 10.09 16 16 O -0.57 -10.51 14.10 5.29 0.07 -10.44 16 17 N -0.69 -8.26 5.35 -14.22 -0.08 -8.34 16 18 C 0.17 2.12 6.26 -83.69 -0.52 1.60 16 19 C -0.15 -1.53 9.96 -39.40 -0.39 -1.93 16 20 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 21 C -0.14 -1.32 10.04 -39.55 -0.40 -1.72 16 22 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 23 C -0.12 -1.55 8.65 -39.39 -0.34 -1.89 16 24 C -0.15 -3.17 6.96 -25.83 -0.18 -3.35 16 25 C -0.15 -2.87 8.03 -25.83 -0.21 -3.08 16 26 C -0.10 -2.09 7.07 -25.92 -0.18 -2.28 16 27 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.41 5.86 7.46 -40.82 -0.30 5.56 16 31 H 0.41 3.67 8.84 -40.82 -0.36 3.31 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.14 1.92 6.49 -52.48 -0.34 1.58 16 37 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 38 H 0.05 1.07 7.58 -51.93 -0.39 0.68 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.83 8.09 -51.93 -0.42 1.41 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -31.55 359.90 -9.37 -40.92 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.59 Total: 10.49 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.88 Total: 0.61 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.27 Total: -42.63 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.57 Total: -30.61 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.55 -9.37 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.131 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds