Wall clock time and date at job start Tue Mar 31 2020 12:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99916 * 2 1 4 4 H 1.48505 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47199 * 300.00057 * 3 2 1 6 6 H 1.48500 * 109.47257 * 60.00176 * 3 2 1 7 7 C 1.37876 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00003 * 185.03700 * 7 2 1 9 9 C 1.50699 * 120.00051 * 4.76509 * 7 2 1 10 10 O 1.45200 * 112.85109 * 295.22170 * 9 7 2 11 11 C 1.34221 * 116.99942 * 300.87874 * 10 9 7 12 12 O 1.20826 * 120.00188 * 354.75760 * 11 10 9 13 13 C 1.50703 * 119.99989 * 174.76152 * 11 10 9 14 14 N 1.46497 * 109.47092 * 179.97438 * 13 11 10 15 15 C 1.34784 * 119.99525 * 179.97438 * 14 13 11 16 16 O 1.21582 * 120.00270 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99323 * 179.97438 * 15 14 13 18 18 C 1.39944 * 119.99571 * 185.23412 * 17 15 14 19 19 C 1.38865 * 120.07098 * 214.02988 * 18 17 15 20 20 C 1.38112 * 119.93308 * 179.76813 * 19 18 17 21 21 C 1.38288 * 120.06535 * 0.51198 * 20 19 18 22 22 C 1.38280 * 120.14254 * 359.73908 * 21 20 19 23 23 C 1.38116 * 120.06604 * 0.02562 * 22 21 20 24 24 C 1.53784 * 113.61631 * 164.02797 * 9 7 2 25 25 C 1.53952 * 87.02014 * 220.05147 * 24 9 7 26 26 C 1.53779 * 113.61445 * 66.41929 * 9 7 2 27 27 H 0.96994 * 120.00191 * 4.99854 * 1 2 3 28 28 H 1.09002 * 109.46815 * 299.99969 * 13 11 10 29 29 H 1.08997 * 109.47226 * 59.99777 * 13 11 10 30 30 H 0.96997 * 120.00298 * 359.97438 * 14 13 11 31 31 H 0.96994 * 119.99978 * 5.23604 * 17 15 14 32 32 H 1.08009 * 120.03233 * 359.97438 * 19 18 17 33 33 H 1.07994 * 119.97012 * 180.24871 * 20 19 18 34 34 H 1.08004 * 119.92596 * 179.72469 * 21 20 19 35 35 H 1.07998 * 119.96286 * 180.02562 * 22 21 20 36 36 H 1.08006 * 120.03001 * 179.97438 * 23 22 21 37 37 H 1.09006 * 113.61371 * 334.56882 * 24 9 7 38 38 H 1.08998 * 113.61367 * 105.46734 * 24 9 7 39 39 H 1.09003 * 113.53356 * 270.81205 * 25 24 9 40 40 H 1.09003 * 113.74460 * 139.94529 * 25 24 9 41 41 H 1.08996 * 113.61674 * 254.52705 * 26 9 7 42 42 H 1.09001 * 113.61470 * 25.35446 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0827 9 6 1.2550 -2.4969 -0.1073 10 8 0.3945 -2.7486 1.0349 11 6 0.9827 -2.8062 2.2399 12 8 2.1863 -2.7464 2.3283 13 6 0.1420 -2.9457 3.4829 14 7 1.0134 -2.9862 4.6598 15 6 0.4780 -3.1075 5.8908 16 8 -0.7281 -3.1829 6.0245 17 7 1.2798 -3.1453 6.9736 18 6 0.7340 -3.3809 8.2404 19 6 1.2856 -2.7720 9.3600 20 6 0.7417 -3.0027 10.6083 21 6 -0.3446 -3.8475 10.7454 22 6 -0.8929 -4.4594 9.6332 23 6 -0.3565 -4.2289 8.3815 24 6 2.1476 -3.6921 -0.4812 25 6 0.9967 -4.1651 -1.3878 26 6 0.5542 -2.6941 -1.4618 27 1 -0.4850 0.8368 -0.0732 28 1 -0.5352 -2.0951 3.5608 29 1 -0.4372 -3.8675 3.4282 30 1 1.9756 -2.9257 4.5532 31 1 2.2351 -3.0092 6.8746 32 1 2.1371 -2.1159 9.2541 33 1 1.1677 -2.5263 11.4788 34 1 -0.7654 -4.0298 11.7232 35 1 -1.7415 -5.1183 9.7435 36 1 -0.7851 -4.7075 7.5133 37 1 3.0472 -3.4108 -1.0287 38 1 2.3512 -4.3629 0.3534 39 1 0.2805 -4.8114 -0.8804 40 1 1.3289 -4.5698 -2.3437 41 1 -0.5266 -2.5606 -1.4178 42 1 1.0165 -2.1384 -2.2776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:28 Heat of formation + Delta-G solvation = -73.963398 kcal Electronic energy + Delta-G solvation = -26083.846174 eV Core-core repulsion = 22222.460155 eV Total energy + Delta-G solvation = -3861.386019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87288 -41.22608 -39.68005 -38.86621 -36.14380 -35.85315 -35.58935 -34.45203 -31.79737 -30.87666 -29.03089 -28.25762 -26.34973 -24.62990 -23.95444 -23.40949 -22.12998 -21.85633 -20.20087 -19.83480 -18.94890 -18.80086 -17.43448 -17.21793 -17.07197 -16.86898 -16.75791 -16.30974 -16.20733 -15.70269 -15.56124 -15.14292 -14.85531 -14.77020 -14.29295 -14.05669 -13.85220 -13.65183 -13.43413 -13.26726 -12.98916 -12.83201 -12.60906 -12.30222 -12.16313 -12.05077 -11.81827 -11.70945 -11.58084 -11.24973 -11.23518 -10.80784 -10.51930 -10.42244 -10.30786 -9.83217 -9.07107 -8.19493 -6.37316 0.36850 0.50497 1.20370 1.34494 1.37999 1.47769 1.51646 1.91386 2.23151 2.36146 2.93994 3.04984 3.11691 3.78805 3.98997 4.02327 4.11103 4.13018 4.24570 4.32248 4.34478 4.36533 4.56291 4.60281 4.62128 4.65308 4.87965 5.05221 5.06591 5.11047 5.13690 5.32681 5.35795 5.41299 5.51652 5.59974 5.63031 5.66416 5.73542 5.82547 5.90304 6.13486 6.33045 6.67946 6.77713 7.17630 7.29569 7.37479 8.83666 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002864 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.969524 B = 9773.312672 C =10613.467642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.210 3.790 10 O -0.344 6.344 11 C 0.459 3.541 12 O -0.528 6.528 13 C 0.154 3.846 14 N -0.721 5.721 15 C 0.708 3.292 16 O -0.607 6.607 17 N -0.674 5.674 18 C 0.146 3.854 19 C -0.151 4.151 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.098 4.098 27 H 0.264 0.736 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.414 0.586 31 H 0.422 0.578 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -7.963 16.095 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.169 4.169 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.176 3.824 10 O -0.259 6.259 11 C 0.302 3.698 12 O -0.418 6.418 13 C 0.028 3.972 14 N -0.380 5.380 15 C 0.409 3.591 16 O -0.486 6.486 17 N -0.322 5.322 18 C 0.051 3.949 19 C -0.172 4.172 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.128 4.128 23 C -0.167 4.167 24 C -0.184 4.184 25 C -0.165 4.165 26 C -0.135 4.135 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.253 0.747 31 H 0.261 0.739 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.908 -7.920 16.108 17.973 hybrid contribution 1.251 1.284 -0.523 1.867 sum 2.159 -6.637 15.585 17.077 Atomic orbital electron populations 1.70131 1.06703 1.27752 1.47701 1.25695 0.95588 1.01948 0.93706 0.85720 0.79236 0.80211 0.77818 1.19585 1.19628 1.21147 1.21424 0.92911 0.91047 1.51905 0.93253 1.20939 0.87617 0.92432 0.81458 1.86361 1.44342 1.79639 1.15592 1.23236 0.87583 0.72763 0.86260 1.90518 1.16763 1.46894 1.87648 1.20389 0.91208 1.05778 0.79821 1.44661 1.11429 1.78526 1.03396 1.15795 0.85054 0.77730 0.80534 1.90931 1.13789 1.58285 1.85608 1.42413 1.11325 1.74645 1.03853 1.17782 0.96622 0.96748 0.83705 1.21174 1.03121 1.01137 0.91723 1.21339 0.95844 0.97619 0.97090 1.21493 0.97034 0.97919 0.99394 1.21291 0.99963 0.99869 0.91667 1.21218 0.97915 0.98915 0.98679 1.23398 0.98068 0.97804 0.99157 1.22907 0.97528 0.96038 1.00043 1.22700 0.99578 0.95445 0.95809 0.92679 0.88413 0.86404 0.74731 0.73940 0.83745 0.82747 0.83319 0.84397 0.87035 0.89987 0.93186 0.90256 0.89644 0.93157 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.00 12.79 21.45 0.27 -48.72 16 2 C 0.03 1.83 5.38 84.65 0.46 2.28 16 3 Si 0.94 43.01 29.54 68.60 2.03 45.03 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.54 -28.88 7.15 25.60 0.18 -28.70 16 8 H 0.05 2.77 7.82 -2.91 -0.02 2.74 16 9 C 0.21 10.14 0.33 -11.01 0.00 10.13 16 10 O -0.34 -16.54 9.85 -51.33 -0.51 -17.04 16 11 C 0.46 19.83 7.47 71.24 0.53 20.37 16 12 O -0.53 -24.32 13.84 21.96 0.30 -24.02 16 13 C 0.15 5.40 6.27 85.63 0.54 5.94 16 14 N -0.72 -22.09 5.53 -482.29 -2.67 -24.76 16 15 C 0.71 21.80 8.30 179.05 1.49 23.29 16 16 O -0.61 -22.74 14.10 -3.97 -0.06 -22.80 16 17 N -0.67 -15.95 5.35 -317.17 -1.70 -17.65 16 18 C 0.15 3.49 6.26 38.15 0.24 3.73 16 19 C -0.15 -2.75 9.96 22.39 0.22 -2.52 16 20 C -0.10 -1.52 10.04 22.25 0.22 -1.29 16 21 C -0.14 -2.20 10.04 22.29 0.22 -1.98 16 22 C -0.11 -2.19 10.04 22.25 0.22 -1.97 16 23 C -0.15 -3.79 8.65 22.39 0.19 -3.59 16 24 C -0.15 -6.05 6.96 31.18 0.22 -5.83 16 25 C -0.13 -4.55 8.03 31.18 0.25 -4.30 16 26 C -0.10 -4.26 7.07 31.12 0.22 -4.04 16 27 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 28 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 29 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.41 11.83 7.46 -92.71 -0.69 11.14 16 31 H 0.42 7.24 8.84 -92.71 -0.82 6.42 16 32 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.11 3.36 6.49 -2.91 -0.02 3.34 16 37 H 0.08 3.32 8.09 -2.38 -0.02 3.30 16 38 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 39 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.08 3.45 8.09 -2.39 -0.02 3.43 16 Total: -1.00 -68.66 359.90 2.43 -66.23 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.45 Total: 32.22 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.20 Total: 11.50 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -4.09 Total: -91.13 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -0.26 Total: -63.86 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -68.66 2.43 -66.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.734 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds