Wall clock time and date at job start Tue Mar 31 2020 12:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47164 * 239.99652 * 3 2 1 5 5 H 1.48499 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47273 * 120.00064 * 3 2 1 7 7 C 1.37882 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47458 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99470 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00412 * 180.02562 * 11 10 9 14 14 C 1.39917 * 120.00076 * 174.73008 * 13 11 10 15 15 C 1.38891 * 120.07284 * 326.55350 * 14 13 11 16 16 C 1.38089 * 119.92960 * 179.76815 * 15 14 13 17 17 C 1.38306 * 120.07171 * 0.48662 * 16 15 14 18 18 C 1.38255 * 120.13731 * 359.76365 * 17 16 15 19 19 C 1.50706 * 119.96157 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.47095 * 270.02535 * 19 18 17 21 21 C 1.47091 * 125.55729 * 269.71826 * 20 19 18 22 22 C 1.54092 * 103.77550 * 179.87129 * 21 20 19 23 23 O 1.45707 * 104.00597 * 0.37440 * 22 21 20 24 24 C 1.33762 * 109.47591 * 359.75463 * 23 22 21 25 25 O 1.21520 * 123.07091 * 179.97438 * 24 23 22 26 26 C 1.38135 * 120.07585 * 0.02562 * 18 17 16 27 27 H 0.97003 * 120.00045 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46787 * 59.99614 * 9 7 2 29 29 H 1.08998 * 109.46739 * 300.00308 * 9 7 2 30 30 H 1.09004 * 109.47029 * 300.00330 * 10 9 7 31 31 H 1.09000 * 109.47178 * 59.99787 * 10 9 7 32 32 H 0.97006 * 119.99424 * 354.73050 * 13 11 10 33 33 H 1.08002 * 120.03544 * 359.97438 * 15 14 13 34 34 H 1.08002 * 119.96600 * 180.21141 * 16 15 14 35 35 H 1.07994 * 119.93065 * 179.74693 * 17 16 15 36 36 H 1.08992 * 109.47165 * 30.02462 * 19 18 17 37 37 H 1.09001 * 109.46989 * 150.02752 * 19 18 17 38 38 H 1.08998 * 110.56863 * 298.57427 * 21 20 19 39 39 H 1.09003 * 110.56311 * 61.43119 * 21 20 19 40 40 H 1.08998 * 110.73498 * 241.64316 * 22 21 20 41 41 H 1.08993 * 110.43313 * 118.96023 * 22 21 20 42 42 H 1.08003 * 120.03420 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2787 -4.9671 -0.0010 13 7 2.1655 -6.1344 0.0003 14 6 1.4702 -7.3436 0.1110 15 6 0.3098 -7.4121 0.8713 16 6 -0.3766 -8.6058 0.9746 17 6 0.0956 -9.7349 0.3303 18 6 1.2531 -9.6712 -0.4230 19 6 1.7644 -10.9040 -1.1230 20 7 2.6744 -11.6291 -0.2326 21 6 4.1292 -11.4287 -0.1487 22 6 4.5761 -12.4325 0.9315 23 8 3.3406 -13.0928 1.3322 24 6 2.3179 -12.5870 0.6340 25 8 1.1704 -12.9622 0.7725 26 6 1.9422 -8.4791 -0.5339 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6044 -0.8895 31 1 2.8718 -3.6044 0.8905 32 1 3.1325 -6.1362 -0.0761 33 1 -0.0570 -6.5319 1.3783 34 1 -1.2809 -8.6589 1.5628 35 1 -0.4409 -10.6682 0.4160 36 1 0.9247 -11.5470 -1.3861 37 1 2.2971 -10.6131 -2.0284 38 1 4.6026 -11.6551 -1.1040 39 1 4.3579 -10.4089 0.1610 40 1 5.0241 -11.9136 1.7789 41 1 5.2770 -13.1548 0.5131 42 1 2.8466 -8.4302 -1.1222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812475048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:28 Heat of formation + Delta-G solvation = -81.704531 kcal Electronic energy + Delta-G solvation = -25423.518008 eV Core-core repulsion = 21561.796308 eV Total energy + Delta-G solvation = -3861.721700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88339 -40.32888 -38.59515 -37.44426 -36.04933 -34.53512 -33.56165 -32.06960 -31.20463 -30.13158 -29.40861 -26.84514 -25.83262 -24.12709 -22.87753 -22.67010 -21.56459 -20.75473 -19.62358 -17.88976 -17.79825 -17.24879 -17.17752 -16.76085 -16.14404 -15.84834 -15.43506 -15.15126 -14.65285 -14.52884 -14.49854 -14.47519 -14.30211 -13.79134 -13.37337 -12.99498 -12.96470 -12.84695 -12.41732 -12.25177 -12.20417 -11.76441 -11.33196 -11.24424 -11.07757 -10.96604 -10.92100 -10.67865 -10.22776 -10.05054 -9.76684 -9.42390 -9.30145 -9.14785 -8.89618 -8.38318 -8.03641 -6.01694 -4.06809 1.13612 1.30031 2.19822 2.43092 2.99572 3.11024 3.26489 3.30476 3.35921 3.37508 3.68473 3.83767 4.15717 4.20342 4.42380 4.53857 4.69202 4.75221 4.85240 4.98907 5.09865 5.17038 5.21277 5.31832 5.33306 5.40292 5.56325 5.69258 5.89207 5.96813 6.07621 6.08408 6.33780 6.35259 6.52727 6.57497 6.76595 6.98267 7.06176 7.60525 7.66863 7.69742 7.76390 7.99246 8.29722 8.52704 9.00842 9.57110 11.09139 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.002162 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.074485 B =12947.101957 C =13558.393411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.508 3.492 12 O -0.511 6.511 13 N -0.687 5.687 14 C 0.157 3.843 15 C -0.114 4.114 16 C -0.101 4.101 17 C -0.117 4.117 18 C -0.105 4.105 19 C 0.191 3.809 20 N -0.625 5.625 21 C 0.064 3.936 22 C 0.041 3.959 23 O -0.330 6.330 24 C 0.643 3.357 25 O -0.519 6.519 26 C -0.138 4.138 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.407 0.593 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -25.291 -1.522 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.298 3.702 12 O -0.384 6.384 13 N -0.334 5.334 14 C 0.062 3.938 15 C -0.134 4.134 16 C -0.119 4.119 17 C -0.136 4.136 18 C -0.106 4.106 19 C 0.071 3.929 20 N -0.373 5.373 21 C -0.060 4.060 22 C -0.034 4.034 23 O -0.240 6.240 24 C 0.397 3.603 25 O -0.403 6.403 26 C -0.159 4.159 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.243 0.757 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.334 -25.448 -1.277 27.496 hybrid contribution 1.153 1.165 -0.109 1.643 sum 11.487 -24.283 -1.386 26.898 Atomic orbital electron populations 1.69979 1.06074 1.26824 1.49824 1.25027 0.94842 0.99281 0.95196 0.86634 0.79540 0.83094 0.78554 1.20230 1.21248 1.20221 1.21149 0.92882 0.90921 1.51877 0.92610 1.18912 0.93128 0.89300 0.98738 1.21912 1.00846 0.91251 1.02835 1.21857 0.88868 0.85430 0.74026 1.90698 1.14337 1.87200 1.46147 1.43965 1.10582 1.04393 1.74411 1.17797 0.94414 0.85841 0.95792 1.21327 0.95324 0.98803 0.97959 1.21074 0.99620 0.92099 0.99156 1.21070 0.96264 0.98663 0.97616 1.19813 0.96152 0.94225 1.00458 1.20176 0.92676 0.90186 0.89823 1.48126 1.07923 1.39236 1.41984 1.22827 0.81365 1.01289 1.00488 1.24285 0.85423 0.95215 0.98436 1.87292 1.17702 1.59389 1.59638 1.18511 0.84922 0.78809 0.78075 1.91047 1.15216 1.64775 1.69284 1.20679 1.01614 0.92159 1.01478 0.92803 0.95730 0.95733 0.89898 0.89774 0.75716 0.84495 0.85634 0.85721 0.88384 0.88783 0.88861 0.88904 0.87578 0.87631 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.04 0.95 4.26 -27.89 -0.12 0.84 16 10 C -0.13 -2.44 5.64 -27.89 -0.16 -2.60 16 11 C 0.51 9.22 7.57 -10.99 -0.08 9.14 16 12 O -0.51 -11.43 13.68 5.55 0.08 -11.35 16 13 N -0.69 -9.21 5.34 -9.86 -0.05 -9.26 16 14 C 0.16 2.12 6.28 -83.70 -0.53 1.59 16 15 C -0.11 -1.71 8.66 -39.39 -0.34 -2.05 16 16 C -0.10 -1.32 10.04 -39.61 -0.40 -1.72 16 17 C -0.12 -1.40 9.70 -39.55 -0.38 -1.78 16 18 C -0.10 -1.08 5.46 -104.65 -0.57 -1.65 16 19 C 0.19 1.47 6.14 -5.19 -0.03 1.43 16 20 N -0.63 -4.91 2.95 -180.22 -0.53 -5.44 16 21 C 0.06 0.24 7.70 -3.15 -0.02 0.21 16 22 C 0.04 0.16 8.23 37.73 0.31 0.47 16 23 O -0.33 -3.16 11.09 -37.81 -0.42 -3.58 16 24 C 0.64 7.27 8.85 53.71 0.48 7.74 16 25 O -0.52 -7.87 17.54 -19.12 -0.34 -8.21 16 26 C -0.14 -1.44 9.62 -39.39 -0.38 -1.82 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.41 3.89 8.82 -40.82 -0.36 3.53 16 33 H 0.14 2.36 6.43 -52.49 -0.34 2.02 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.10 0.80 7.87 -51.93 -0.41 0.39 16 37 H 0.09 0.46 8.08 -51.93 -0.42 0.05 16 38 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -37.56 363.91 -8.41 -45.98 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.71 Total: -0.06 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.64 Total: -3.55 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.15 Total: -40.94 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.68 Total: -23.14 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.56 -8.41 -45.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812475048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.729 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds