Wall clock time and date at job start Tue Mar 31 2020 12:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47164 * 239.99652 * 3 2 1 5 5 H 1.48499 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47273 * 120.00064 * 3 2 1 7 7 C 1.37882 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47458 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99470 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00412 * 180.02562 * 11 10 9 14 14 C 1.39917 * 120.00076 * 174.73008 * 13 11 10 15 15 C 1.38891 * 120.07284 * 326.55350 * 14 13 11 16 16 C 1.38089 * 119.92960 * 179.76815 * 15 14 13 17 17 C 1.38306 * 120.07171 * 0.48662 * 16 15 14 18 18 C 1.38255 * 120.13731 * 359.76365 * 17 16 15 19 19 C 1.50706 * 119.96157 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.47095 * 270.02535 * 19 18 17 21 21 C 1.47091 * 125.55729 * 269.71826 * 20 19 18 22 22 C 1.54092 * 103.77550 * 179.87129 * 21 20 19 23 23 O 1.45707 * 104.00597 * 0.37440 * 22 21 20 24 24 C 1.33762 * 109.47591 * 359.75463 * 23 22 21 25 25 O 1.21520 * 123.07091 * 179.97438 * 24 23 22 26 26 C 1.38135 * 120.07585 * 0.02562 * 18 17 16 27 27 H 0.97003 * 120.00045 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46787 * 59.99614 * 9 7 2 29 29 H 1.08998 * 109.46739 * 300.00308 * 9 7 2 30 30 H 1.09004 * 109.47029 * 300.00330 * 10 9 7 31 31 H 1.09000 * 109.47178 * 59.99787 * 10 9 7 32 32 H 0.97006 * 119.99424 * 354.73050 * 13 11 10 33 33 H 1.08002 * 120.03544 * 359.97438 * 15 14 13 34 34 H 1.08002 * 119.96600 * 180.21141 * 16 15 14 35 35 H 1.07994 * 119.93065 * 179.74693 * 17 16 15 36 36 H 1.08992 * 109.47165 * 30.02462 * 19 18 17 37 37 H 1.09001 * 109.46989 * 150.02752 * 19 18 17 38 38 H 1.08998 * 110.56863 * 298.57427 * 21 20 19 39 39 H 1.09003 * 110.56311 * 61.43119 * 21 20 19 40 40 H 1.08998 * 110.73498 * 241.64316 * 22 21 20 41 41 H 1.08993 * 110.43313 * 118.96023 * 22 21 20 42 42 H 1.08003 * 120.03420 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2787 -4.9671 -0.0010 13 7 2.1655 -6.1344 0.0003 14 6 1.4702 -7.3436 0.1110 15 6 0.3098 -7.4121 0.8713 16 6 -0.3766 -8.6058 0.9746 17 6 0.0956 -9.7349 0.3303 18 6 1.2531 -9.6712 -0.4230 19 6 1.7644 -10.9040 -1.1230 20 7 2.6744 -11.6291 -0.2326 21 6 4.1292 -11.4287 -0.1487 22 6 4.5761 -12.4325 0.9315 23 8 3.3406 -13.0928 1.3322 24 6 2.3179 -12.5870 0.6340 25 8 1.1704 -12.9622 0.7725 26 6 1.9422 -8.4791 -0.5339 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6044 -0.8895 31 1 2.8718 -3.6044 0.8905 32 1 3.1325 -6.1362 -0.0761 33 1 -0.0570 -6.5319 1.3783 34 1 -1.2809 -8.6589 1.5628 35 1 -0.4409 -10.6682 0.4160 36 1 0.9247 -11.5470 -1.3861 37 1 2.2971 -10.6131 -2.0284 38 1 4.6026 -11.6551 -1.1040 39 1 4.3579 -10.4089 0.1610 40 1 5.0241 -11.9136 1.7789 41 1 5.2770 -13.1548 0.5131 42 1 2.8466 -8.4302 -1.1222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812475048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:27 Heat of formation + Delta-G solvation = -108.088581 kcal Electronic energy + Delta-G solvation = -25424.662106 eV Core-core repulsion = 21561.796308 eV Total energy + Delta-G solvation = -3862.865798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50200 -41.53682 -39.74208 -38.26803 -36.82341 -35.71824 -35.54887 -33.17789 -32.75041 -30.92846 -30.30016 -27.75807 -27.53573 -24.65399 -24.30208 -23.60021 -22.69843 -21.89645 -20.89654 -18.92268 -18.67135 -18.36035 -17.92287 -17.76101 -17.42914 -17.15982 -16.64498 -16.46757 -16.05952 -15.59768 -15.40976 -15.07864 -14.99459 -14.82155 -14.61052 -14.31849 -14.18131 -13.72693 -13.49937 -13.27425 -13.25823 -12.97995 -12.78662 -12.73680 -12.52145 -12.21691 -11.91607 -11.77459 -11.65387 -11.60408 -11.40526 -11.32469 -10.77892 -10.55901 -9.99786 -9.83820 -9.11852 -8.18167 -6.32301 0.17933 0.30467 1.42786 1.46973 1.51076 1.54713 1.66418 1.69890 2.08219 2.43923 2.63462 2.87591 3.15224 3.42562 3.68150 3.70878 3.84579 4.03541 4.05898 4.19273 4.33161 4.39911 4.42756 4.53163 4.55525 4.57451 4.65522 4.66990 4.83960 4.88819 4.97545 5.06544 5.30836 5.35585 5.38157 5.48728 5.52309 5.56865 5.61755 5.84533 6.01996 6.16418 6.36973 6.48305 6.86282 6.95564 7.22089 7.38242 8.94227 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.002162 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.074485 B =12947.101957 C =13558.393411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.041 3.959 10 C -0.116 4.116 11 C 0.511 3.489 12 O -0.566 6.566 13 N -0.661 5.661 14 C 0.136 3.864 15 C -0.142 4.142 16 C -0.112 4.112 17 C -0.122 4.122 18 C -0.096 4.096 19 C 0.192 3.808 20 N -0.619 5.619 21 C 0.061 3.939 22 C 0.033 3.967 23 O -0.354 6.354 24 C 0.634 3.366 25 O -0.575 6.575 26 C -0.115 4.115 27 H 0.262 0.738 28 H -0.017 1.017 29 H -0.019 1.019 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.430 0.570 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.743 -25.948 -3.050 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.003 3.997 10 C -0.155 4.155 11 C 0.301 3.699 12 O -0.443 6.443 13 N -0.308 5.308 14 C 0.042 3.958 15 C -0.163 4.163 16 C -0.131 4.131 17 C -0.142 4.142 18 C -0.098 4.098 19 C 0.072 3.928 20 N -0.365 5.365 21 C -0.060 4.060 22 C -0.040 4.040 23 O -0.264 6.264 24 C 0.389 3.611 25 O -0.463 6.463 26 C -0.135 4.135 27 H 0.071 0.929 28 H 0.001 0.999 29 H -0.001 1.001 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.270 0.730 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.155 0.845 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.225 -26.140 -2.811 30.381 hybrid contribution -0.291 1.245 0.387 1.336 sum 14.934 -24.895 -2.423 29.131 Atomic orbital electron populations 1.70171 1.08366 1.27861 1.51449 1.26151 0.95698 1.04022 0.94694 0.85375 0.78028 0.77324 0.79532 1.18527 1.21626 1.18674 1.21687 0.94095 0.91468 1.50786 0.90294 1.18702 0.93758 0.92520 0.94735 1.21658 0.99285 0.89053 1.05511 1.21635 0.88039 0.86593 0.73657 1.90698 1.16660 1.87973 1.48965 1.43491 1.11519 1.03026 1.72768 1.17967 0.94412 0.86634 0.96836 1.21206 0.97100 0.98239 0.99720 1.21138 0.99965 0.92125 0.99875 1.21211 0.97247 0.97924 0.97779 1.20158 0.95024 0.95515 0.99143 1.20302 0.93363 0.88557 0.90615 1.48168 1.09866 1.37801 1.40658 1.23216 0.78529 1.02123 1.02162 1.24771 0.83680 0.96046 0.99509 1.87248 1.19248 1.60180 1.59747 1.18787 0.84615 0.79265 0.78440 1.90991 1.17626 1.66655 1.71045 1.21000 1.02319 0.90268 0.99935 0.92911 0.99895 1.00051 0.86853 0.87178 0.72980 0.87927 0.85415 0.85896 0.89307 0.84512 0.85457 0.87256 0.86006 0.84877 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.29 21.45 0.28 -58.77 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.18 4.26 29.85 0.13 2.31 16 10 C -0.12 -4.27 5.64 29.85 0.17 -4.10 16 11 C 0.51 18.58 7.57 87.66 0.66 19.25 16 12 O -0.57 -26.84 13.68 -3.07 -0.04 -26.88 16 13 N -0.66 -16.39 5.34 -303.51 -1.62 -18.01 16 14 C 0.14 3.50 6.28 38.15 0.24 3.74 16 15 C -0.14 -4.49 8.66 22.39 0.19 -4.30 16 16 C -0.11 -3.11 10.04 22.25 0.22 -2.89 16 17 C -0.12 -2.92 9.70 22.29 0.22 -2.70 16 18 C -0.10 -1.74 5.46 -19.88 -0.11 -1.85 16 19 C 0.19 2.26 6.14 85.63 0.53 2.79 16 20 N -0.62 -7.72 2.95 -955.81 -2.82 -10.54 16 21 C 0.06 0.15 7.70 86.64 0.67 0.82 16 22 C 0.03 0.13 8.23 72.35 0.60 0.73 16 23 O -0.35 -6.29 11.09 -47.23 -0.52 -6.82 16 24 C 0.63 13.71 8.85 129.91 1.15 14.86 16 25 O -0.57 -17.88 17.54 19.62 0.34 -17.54 16 26 C -0.11 -1.96 9.62 22.39 0.22 -1.75 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H -0.02 -1.07 8.10 -2.38 -0.02 -1.09 16 29 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 30 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 31 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.43 6.45 8.82 -92.70 -0.82 5.64 16 33 H 0.10 3.92 6.43 -2.91 -0.02 3.91 16 34 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 37 H 0.14 0.53 8.08 -2.39 -0.02 0.51 16 38 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -90.69 363.91 3.45 -87.24 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.23 Total: 8.72 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.57 Total: -2.83 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -4.15 Total: -87.32 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.22 Total: -51.23 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -90.69 3.45 -87.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812475048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.853 kcal (2) G-P(sol) polarization free energy of solvation -90.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds