Wall clock time and date at job start Tue Mar 31 2020 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30112 * 124.94906 * 2 1 4 4 C 1.35784 * 109.64625 * 179.97438 * 3 2 1 5 5 C 1.39735 * 133.60201 * 180.02562 * 4 3 2 6 6 C 1.36605 * 119.88505 * 180.02562 * 5 4 3 7 7 C 1.38766 * 120.67061 * 359.97438 * 6 5 4 8 8 C 1.37853 * 120.45492 * 359.97438 * 7 6 5 9 9 C 1.38836 * 119.68764 * 0.02562 * 8 7 6 10 10 N 1.36038 * 124.95277 * 179.97438 * 2 1 3 11 11 C 1.46494 * 126.34751 * 359.97438 * 10 2 1 12 12 C 1.50701 * 109.47438 * 270.04874 * 11 10 2 13 13 O 1.20822 * 119.99666 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99926 * 179.97438 * 12 11 10 15 15 C 1.45197 * 116.99646 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47223 * 179.97438 * 15 14 12 17 17 O 1.42904 * 109.46431 * 65.00347 * 16 15 14 18 18 C 1.42904 * 113.99644 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47087 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00091 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00047 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00323 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00077 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46999 * 89.99855 * 23 21 19 25 25 H 1.48506 * 109.47213 * 209.99889 * 23 21 19 26 26 H 1.48504 * 109.47235 * 329.99813 * 23 21 19 27 27 H 1.08999 * 109.46974 * 270.01832 * 1 2 3 28 28 H 1.09006 * 109.47039 * 30.02397 * 1 2 3 29 29 H 1.09000 * 109.46923 * 150.02066 * 1 2 3 30 30 H 1.08000 * 120.05641 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.66329 * 179.72373 * 6 5 4 32 32 H 1.08007 * 119.77548 * 179.97438 * 7 6 5 33 33 H 1.07997 * 120.15999 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46903 * 30.04846 * 11 10 2 35 35 H 1.09005 * 109.47114 * 150.04775 * 11 10 2 36 36 H 1.08995 * 109.47818 * 299.99916 * 15 14 12 37 37 H 1.08998 * 109.47193 * 60.00509 * 15 14 12 38 38 H 1.08996 * 109.47049 * 185.00091 * 16 15 14 39 39 H 1.08998 * 109.47146 * 305.00912 * 16 15 14 40 40 H 1.09001 * 109.46869 * 299.99758 * 18 17 16 41 41 H 1.08991 * 109.47348 * 59.99628 * 18 17 16 42 42 H 0.97002 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7081 0.0006 5 6 4.7586 1.4298 0.0013 6 6 5.9531 0.7671 0.0012 7 6 5.9931 -0.6200 0.0010 8 6 4.8254 -1.3527 0.0013 9 6 3.6019 -0.6964 0.0014 10 7 2.2863 -1.1150 0.0005 11 6 1.8167 -2.5026 0.0016 12 6 1.6550 -2.9771 1.4228 13 8 1.9067 -2.2327 2.3406 14 8 1.2313 -4.2267 1.6691 15 6 1.0992 -4.6155 3.0618 16 6 0.6080 -6.0623 3.1430 17 8 1.6018 -6.9339 2.5998 18 6 1.2403 -8.3161 2.6273 19 6 2.3550 -9.1388 2.0342 20 1 3.2498 -8.6544 1.6720 21 6 2.2325 -10.5097 1.9539 22 7 3.2051 -11.2276 1.4358 23 14 0.6852 -11.3475 2.5809 24 1 -0.3067 -11.4433 1.4799 25 1 1.0216 -12.7109 3.0641 26 1 0.1105 -10.5545 3.6973 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 4.7390 2.5096 0.0010 31 1 6.8758 1.3284 -0.0028 32 1 6.9456 -1.1291 0.0005 33 1 4.8621 -2.4320 0.0016 34 1 0.8574 -2.5619 -0.5126 35 1 2.5434 -3.1326 -0.5113 36 1 2.0672 -4.5319 3.5558 37 1 0.3815 -3.9604 3.5554 38 1 0.4240 -6.3256 4.1846 39 1 -0.3157 -6.1650 2.5736 40 1 1.0691 -8.6264 3.6581 41 1 0.3298 -8.4652 2.0471 42 1 3.1187 -12.1921 1.3790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815191708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:12 Heat of formation + Delta-G solvation = -51.866364 kcal Electronic energy + Delta-G solvation = -25560.907422 eV Core-core repulsion = 21700.479602 eV Total energy + Delta-G solvation = -3860.427820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.49579 -40.51533 -37.73349 -37.33129 -36.34529 -34.53729 -32.77967 -31.74382 -30.96973 -30.40496 -28.40872 -27.76827 -27.50457 -23.17783 -22.36290 -22.29611 -21.97520 -21.53779 -20.13544 -18.23243 -17.68646 -17.48502 -17.04212 -16.75503 -16.48633 -15.63588 -15.52544 -15.35472 -14.96196 -14.50927 -14.33290 -14.26100 -13.72331 -13.57282 -13.40395 -13.35981 -12.99424 -12.75180 -12.53993 -12.48075 -12.10948 -11.86972 -11.75721 -11.66317 -11.29964 -11.06928 -10.91760 -10.77018 -10.68059 -10.43590 -10.15407 -9.95050 -9.29527 -9.01063 -8.59723 -8.50983 -8.27028 -6.19316 -4.19303 0.75589 1.29641 1.88561 1.92925 2.46454 2.77040 3.18128 3.25398 3.25937 3.72284 3.87395 4.13199 4.20171 4.27512 4.32351 4.43480 4.59254 4.79013 4.83695 4.91318 4.97242 5.11638 5.12419 5.18460 5.22701 5.25674 5.38076 5.45971 5.54408 5.56169 5.65116 5.79363 5.92937 6.24112 6.27068 6.33200 6.35210 6.45959 6.68632 6.80040 6.87397 7.48760 7.49317 7.66403 7.85140 8.54365 8.91149 9.38988 10.93582 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002489 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.261917 B =11246.687004 C =12179.996565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.294 3.706 3 N -0.492 5.492 4 C 0.050 3.950 5 C -0.068 4.068 6 C -0.127 4.127 7 C -0.102 4.102 8 C -0.107 4.107 9 C 0.055 3.945 10 N -0.479 5.479 11 C 0.118 3.882 12 C 0.441 3.559 13 O -0.495 6.495 14 O -0.337 6.337 15 C 0.076 3.924 16 C 0.057 3.943 17 O -0.376 6.376 18 C 0.169 3.831 19 C -0.522 4.522 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.267 1.267 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.004 0.996 41 H 0.001 0.999 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 22.759 -3.765 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.029 3.971 3 N -0.212 5.212 4 C -0.067 4.067 5 C -0.087 4.087 6 C -0.147 4.147 7 C -0.122 4.122 8 C -0.128 4.128 9 C -0.052 4.052 10 N -0.171 5.171 11 C -0.006 4.006 12 C 0.282 3.718 13 O -0.383 6.383 14 O -0.252 6.252 15 C 0.002 3.998 16 C -0.020 4.020 17 O -0.295 6.295 18 C 0.094 3.906 19 C -0.559 4.559 20 H 0.101 0.899 21 C -0.129 4.129 22 N -0.532 5.532 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.191 1.191 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.057 23.531 -3.573 24.144 hybrid contribution -0.722 -1.672 0.693 1.949 sum -4.780 21.858 -2.880 22.559 Atomic orbital electron populations 1.20437 0.84297 1.04719 1.04477 1.23617 0.95713 0.80366 0.97403 1.70411 1.00981 1.26893 1.22881 1.19002 0.92039 0.90188 1.05488 1.19991 0.89138 0.99686 0.99910 1.20653 0.97442 0.94377 1.02267 1.20906 0.97314 0.93976 0.99984 1.20050 0.89140 0.99786 1.03785 1.18829 0.84920 0.95265 1.06205 1.44768 1.05158 1.05714 1.61476 1.21145 1.05603 0.81294 0.92564 1.23760 0.74600 0.80976 0.92499 1.90733 1.45585 1.55711 1.46222 1.86571 1.76859 1.29824 1.31924 1.23254 1.02901 0.95218 0.78396 1.22407 0.93044 0.88022 0.98550 1.87975 1.40649 1.18433 1.82486 1.20643 0.96798 0.77766 0.95427 1.20858 1.03469 0.90967 1.40655 0.89944 1.24770 0.96541 0.96832 0.94788 1.69870 1.32207 1.06465 1.44626 0.86846 0.83669 0.79395 0.79792 1.19857 1.20695 1.19128 0.89186 0.88273 0.90130 0.85424 0.85330 0.85092 0.85843 0.84430 0.84475 0.90173 0.90113 0.91593 0.92899 0.97798 0.98118 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.17 36.00 0.37 -0.21 16 2 C 0.29 3.42 7.85 -154.82 -1.22 2.20 16 3 N -0.49 -6.86 11.27 -8.23 -0.09 -6.96 16 4 C 0.05 0.69 7.23 -84.70 -0.61 0.08 16 5 C -0.07 -0.77 10.05 -39.61 -0.40 -1.17 16 6 C -0.13 -1.22 9.96 -39.98 -0.40 -1.62 16 7 C -0.10 -1.03 10.03 -39.53 -0.40 -1.42 16 8 C -0.11 -1.25 10.05 -39.50 -0.40 -1.65 16 9 C 0.06 0.73 6.88 -83.98 -0.58 0.15 16 10 N -0.48 -5.62 2.29 -112.43 -0.26 -5.88 16 11 C 0.12 1.10 6.52 -5.20 -0.03 1.07 16 12 C 0.44 5.70 8.03 36.01 0.29 5.99 16 13 O -0.50 -7.90 16.18 -18.75 -0.30 -8.20 16 14 O -0.34 -4.81 10.19 -42.02 -0.43 -5.24 16 15 C 0.08 1.06 5.84 37.16 0.22 1.28 16 16 C 0.06 0.91 6.33 37.16 0.24 1.15 16 17 O -0.38 -8.36 10.30 -38.80 -0.40 -8.76 16 18 C 0.17 4.11 4.76 36.01 0.17 4.28 16 19 C -0.52 -15.13 9.99 -34.44 -0.34 -15.48 16 20 H 0.08 2.63 8.06 -52.49 -0.42 2.20 16 21 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 22 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 23 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.37 7.01 -51.93 -0.36 0.01 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 0.77 7.00 -51.93 -0.36 0.41 16 35 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.20 8.13 -51.93 -0.42 0.77 16 37 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 41 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -36.95 365.93 -8.79 -45.74 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.73 Total: -2.70 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.19 Total: -3.34 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.42 Total: -39.09 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.13 Total: -22.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.95 -8.79 -45.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.126 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds