Wall clock time and date at job start Tue Mar 31 2020 13:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30229 * 124.92521 * 2 1 4 4 C 1.35543 * 109.70721 * 180.02562 * 3 2 1 5 5 C 1.40028 * 133.39445 * 180.02562 * 4 3 2 6 6 C 1.36167 * 120.08861 * 180.02562 * 5 4 3 7 7 C 1.40223 * 120.51062 * 0.02562 * 6 5 4 8 8 C 1.47470 * 119.94141 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00028 * 180.02562 * 8 7 6 10 10 O 1.34749 * 120.00310 * 359.72170 * 8 7 6 11 11 C 1.45196 * 117.00462 * 180.27248 * 10 8 7 12 12 C 1.52994 * 109.47253 * 180.02562 * 11 10 8 13 13 O 1.42904 * 109.46973 * 65.00472 * 12 11 10 14 14 C 1.42904 * 113.99784 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47162 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99954 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00167 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47269 * 90.00133 * 19 17 15 21 21 H 1.48501 * 109.47184 * 210.00532 * 19 17 15 22 22 H 1.48500 * 109.47183 * 330.00060 * 19 17 15 23 23 C 1.39440 * 120.11531 * 0.25204 * 7 6 5 24 24 C 1.38391 * 119.56794 * 359.46106 * 23 7 6 25 25 N 1.35841 * 124.92201 * 179.97438 * 2 1 3 26 26 C 1.46505 * 126.36932 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.47258 * 270.00206 * 1 2 3 28 28 H 1.09001 * 109.47191 * 30.00229 * 1 2 3 29 29 H 1.09002 * 109.47322 * 150.00035 * 1 2 3 30 30 H 1.08002 * 119.95567 * 359.97101 * 5 4 3 31 31 H 1.08002 * 119.74346 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47461 * 300.00599 * 11 10 8 33 33 H 1.09010 * 109.46796 * 60.00389 * 11 10 8 34 34 H 1.09001 * 109.47094 * 185.00650 * 12 11 10 35 35 H 1.09002 * 109.47283 * 305.00558 * 12 11 10 36 36 H 1.08992 * 109.47429 * 300.00489 * 14 13 12 37 37 H 1.09001 * 109.46591 * 60.00303 * 14 13 12 38 38 H 0.97004 * 119.99666 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.21346 * 179.72562 * 23 7 6 40 40 H 1.09003 * 109.46697 * 269.99656 * 26 25 2 41 41 H 1.08999 * 109.47107 * 29.99569 * 26 25 2 42 42 H 1.09001 * 109.47282 * 150.00321 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2526 1.0677 0.0000 4 6 3.5605 0.7120 -0.0006 5 6 4.7558 1.4413 -0.0004 6 6 5.9522 0.7910 -0.0016 7 6 6.0008 -0.6104 -0.0037 8 6 7.3035 -1.3017 -0.0056 9 8 7.3468 -2.5160 -0.0079 10 8 8.4457 -0.5868 -0.0111 11 6 9.6908 -1.3336 -0.0188 12 6 10.8701 -0.3589 -0.0235 13 8 10.8810 0.3815 1.1987 14 6 11.9496 1.3252 1.2971 15 6 11.8637 2.0454 2.6180 16 1 11.0725 1.8061 3.3132 17 6 12.7958 3.0091 2.9396 18 7 13.7595 3.3002 2.0934 19 14 12.6898 3.9013 4.5774 20 1 13.4722 3.1582 5.5975 21 1 13.2425 5.2718 4.4312 22 1 11.2701 3.9832 5.0055 23 6 4.8196 -1.3514 -0.0098 24 6 3.6015 -0.6947 -0.0024 25 7 2.2846 -1.1138 0.0005 26 6 1.8147 -2.5014 0.0006 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 4.7288 2.5209 -0.0001 31 1 6.8708 1.3591 -0.0011 32 1 9.7430 -1.9622 0.8700 33 1 9.7332 -1.9600 -0.9099 34 1 11.8019 -0.9164 -0.1190 35 1 10.7702 0.3284 -0.8637 36 1 12.9035 0.8024 1.2291 37 1 11.8724 2.0474 0.4842 38 1 14.4150 3.9785 2.3196 39 1 4.8553 -2.4308 -0.0158 40 1 1.6979 -2.8453 1.0283 41 1 0.8554 -2.5602 -0.5135 42 1 2.5413 -3.1312 -0.5128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815241168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:16 Heat of formation + Delta-G solvation = -60.353925 kcal Electronic energy + Delta-G solvation = -25164.680872 eV Core-core repulsion = 21303.885003 eV Total energy + Delta-G solvation = -3860.795868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53929 -40.27649 -37.66942 -36.88623 -35.95820 -34.62031 -32.75640 -31.98642 -30.82879 -30.15287 -28.34089 -27.37857 -26.87344 -24.04853 -22.57742 -22.36891 -21.96291 -21.01885 -20.33723 -18.31129 -17.46888 -16.91060 -16.52789 -16.40862 -16.36328 -16.11303 -15.29351 -14.94264 -14.56833 -14.42516 -14.27440 -13.93791 -13.89603 -13.63002 -13.49915 -13.32524 -12.98079 -12.89657 -12.74371 -12.51627 -11.96222 -11.70570 -11.56182 -11.39801 -10.91810 -10.83099 -10.75753 -10.72252 -10.46132 -10.35214 -10.25258 -10.02880 -9.10940 -8.85789 -8.62783 -8.38528 -8.19460 -6.10084 -4.11555 0.29206 1.21118 2.08746 2.10619 2.77492 2.80686 3.32194 3.37158 3.43083 3.69495 3.74094 4.10129 4.20420 4.34472 4.58122 4.62072 4.69752 4.75460 4.79866 4.91761 4.95608 5.00655 5.03629 5.23478 5.26626 5.27258 5.32964 5.44929 5.48850 5.86815 5.89414 5.92146 6.04137 6.13158 6.19820 6.22996 6.54351 6.57805 6.72790 7.07251 7.41716 7.53566 7.80064 7.84966 8.14488 8.54311 9.01151 9.53221 11.01438 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.002440 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.094561 B =11474.509890 C =12689.833962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.289 3.711 3 N -0.497 5.497 4 C 0.082 3.918 5 C -0.078 4.078 6 C -0.069 4.069 7 C -0.107 4.107 8 C 0.513 3.487 9 O -0.518 6.518 10 O -0.333 6.333 11 C 0.075 3.925 12 C 0.061 3.939 13 O -0.390 6.390 14 C 0.194 3.806 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.036 4.036 24 C 0.024 3.976 25 N -0.490 5.490 26 C 0.076 3.924 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.264 0.736 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.364 -11.282 -7.902 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.024 3.976 3 N -0.217 5.217 4 C -0.038 4.038 5 C -0.097 4.097 6 C -0.090 4.090 7 C -0.110 4.110 8 C 0.358 3.642 9 O -0.409 6.409 10 O -0.248 6.248 11 C 0.002 3.998 12 C -0.016 4.016 13 O -0.310 6.310 14 C 0.120 3.880 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.057 4.057 24 C -0.083 4.083 25 N -0.180 5.180 26 C -0.067 4.067 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.154 0.846 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.605 -10.858 -7.775 29.769 hybrid contribution 0.708 -0.547 0.603 1.079 sum -25.897 -11.405 -7.172 29.192 Atomic orbital electron populations 1.20415 0.84081 1.04743 1.04387 1.23730 0.95880 0.80646 0.97325 1.70437 1.00911 1.27146 1.23220 1.19285 0.92166 0.90128 1.02178 1.20007 0.88456 1.00423 1.00853 1.21048 0.98894 0.92718 0.96346 1.18733 0.89528 0.93787 1.08924 1.20912 0.85085 0.85524 0.72666 1.90804 1.88387 1.14866 1.46836 1.86645 1.14458 1.40669 1.83054 1.23248 0.79794 0.94131 1.02637 1.22326 0.94381 0.94383 0.90541 1.87925 1.53645 1.54837 1.34618 1.20237 0.84040 0.86134 0.97578 1.21047 1.12615 1.19725 1.01825 0.91499 1.24947 0.94990 0.96744 0.97845 1.69961 1.15258 1.32788 1.35803 0.86331 0.78531 0.78638 0.82977 1.20503 1.21072 1.19556 1.19877 0.87707 0.99949 0.98159 1.18559 0.85119 0.95196 1.09428 1.45105 1.04457 1.07721 1.60752 1.22045 1.01742 0.79034 1.03833 0.89137 0.88346 0.90160 0.84231 0.83012 0.90386 0.90325 0.91893 0.93097 0.97635 0.97446 0.92653 0.84573 0.90370 0.89197 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.17 36.00 0.37 0.03 16 2 C 0.29 2.69 7.85 -154.91 -1.22 1.47 16 3 N -0.50 -6.32 11.26 -8.18 -0.09 -6.41 16 4 C 0.08 1.10 7.23 -84.62 -0.61 0.49 16 5 C -0.08 -0.99 10.03 -39.66 -0.40 -1.39 16 6 C -0.07 -0.92 9.53 -39.58 -0.38 -1.30 16 7 C -0.11 -1.49 5.88 -104.94 -0.62 -2.11 16 8 C 0.51 8.16 7.89 34.49 0.27 8.43 16 9 O -0.52 -8.87 16.12 -19.28 -0.31 -9.18 16 10 O -0.33 -5.68 9.41 -43.41 -0.41 -6.09 16 11 C 0.08 1.21 5.85 37.15 0.22 1.43 16 12 C 0.06 1.12 6.33 37.15 0.24 1.36 16 13 O -0.39 -9.47 10.30 -38.80 -0.40 -9.87 16 14 C 0.19 5.32 5.69 36.00 0.20 5.53 16 15 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 16 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.91 22.01 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.04 -0.45 9.58 -39.08 -0.37 -0.82 16 24 C 0.02 0.29 6.86 -84.00 -0.58 -0.28 16 25 N -0.49 -4.43 3.21 -118.54 -0.38 -4.81 16 26 C 0.08 0.33 10.96 59.85 0.66 0.99 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.14 7.01 -51.93 -0.36 -0.22 16 30 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.15 1.99 7.58 -52.49 -0.40 1.59 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.15 6.99 -51.93 -0.36 -0.21 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -36.46 367.99 -8.69 -45.15 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.72 Total: -4.95 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.64 Total: -0.20 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.26 Total: -37.39 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.12 Total: -25.14 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.46 -8.69 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.207 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds