Wall clock time and date at job start Tue Mar 31 2020 13:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30229 * 124.92521 * 2 1 4 4 C 1.35543 * 109.70721 * 180.02562 * 3 2 1 5 5 C 1.40028 * 133.39445 * 180.02562 * 4 3 2 6 6 C 1.36167 * 120.08861 * 180.02562 * 5 4 3 7 7 C 1.40223 * 120.51062 * 0.02562 * 6 5 4 8 8 C 1.47470 * 119.94141 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00028 * 180.02562 * 8 7 6 10 10 O 1.34749 * 120.00310 * 359.72170 * 8 7 6 11 11 C 1.45196 * 117.00462 * 180.27248 * 10 8 7 12 12 C 1.52994 * 109.47253 * 180.02562 * 11 10 8 13 13 O 1.42904 * 109.46973 * 65.00472 * 12 11 10 14 14 C 1.42904 * 113.99784 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47162 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99954 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00167 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47269 * 90.00133 * 19 17 15 21 21 H 1.48501 * 109.47184 * 210.00532 * 19 17 15 22 22 H 1.48500 * 109.47183 * 330.00060 * 19 17 15 23 23 C 1.39440 * 120.11531 * 0.25204 * 7 6 5 24 24 C 1.38391 * 119.56794 * 359.46106 * 23 7 6 25 25 N 1.35841 * 124.92201 * 179.97438 * 2 1 3 26 26 C 1.46505 * 126.36932 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.47258 * 270.00206 * 1 2 3 28 28 H 1.09001 * 109.47191 * 30.00229 * 1 2 3 29 29 H 1.09002 * 109.47322 * 150.00035 * 1 2 3 30 30 H 1.08002 * 119.95567 * 359.97101 * 5 4 3 31 31 H 1.08002 * 119.74346 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47461 * 300.00599 * 11 10 8 33 33 H 1.09010 * 109.46796 * 60.00389 * 11 10 8 34 34 H 1.09001 * 109.47094 * 185.00650 * 12 11 10 35 35 H 1.09002 * 109.47283 * 305.00558 * 12 11 10 36 36 H 1.08992 * 109.47429 * 300.00489 * 14 13 12 37 37 H 1.09001 * 109.46591 * 60.00303 * 14 13 12 38 38 H 0.97004 * 119.99666 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.21346 * 179.72562 * 23 7 6 40 40 H 1.09003 * 109.46697 * 269.99656 * 26 25 2 41 41 H 1.08999 * 109.47107 * 29.99569 * 26 25 2 42 42 H 1.09001 * 109.47282 * 150.00321 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2526 1.0677 0.0000 4 6 3.5605 0.7120 -0.0006 5 6 4.7558 1.4413 -0.0004 6 6 5.9522 0.7910 -0.0016 7 6 6.0008 -0.6104 -0.0037 8 6 7.3035 -1.3017 -0.0056 9 8 7.3468 -2.5160 -0.0079 10 8 8.4457 -0.5868 -0.0111 11 6 9.6908 -1.3336 -0.0188 12 6 10.8701 -0.3589 -0.0235 13 8 10.8810 0.3815 1.1987 14 6 11.9496 1.3252 1.2971 15 6 11.8637 2.0454 2.6180 16 1 11.0725 1.8061 3.3132 17 6 12.7958 3.0091 2.9396 18 7 13.7595 3.3002 2.0934 19 14 12.6898 3.9013 4.5774 20 1 13.4722 3.1582 5.5975 21 1 13.2425 5.2718 4.4312 22 1 11.2701 3.9832 5.0055 23 6 4.8196 -1.3514 -0.0098 24 6 3.6015 -0.6947 -0.0024 25 7 2.2846 -1.1138 0.0005 26 6 1.8147 -2.5014 0.0006 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 4.7288 2.5209 -0.0001 31 1 6.8708 1.3591 -0.0011 32 1 9.7430 -1.9622 0.8700 33 1 9.7332 -1.9600 -0.9099 34 1 11.8019 -0.9164 -0.1190 35 1 10.7702 0.3284 -0.8637 36 1 12.9035 0.8024 1.2291 37 1 11.8724 2.0474 0.4842 38 1 14.4150 3.9785 2.3196 39 1 4.8553 -2.4308 -0.0158 40 1 1.6979 -2.8453 1.0283 41 1 0.8554 -2.5602 -0.5135 42 1 2.5413 -3.1312 -0.5128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815241168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:16 Heat of formation + Delta-G solvation = -82.616593 kcal Electronic energy + Delta-G solvation = -25165.646253 eV Core-core repulsion = 21303.885003 eV Total energy + Delta-G solvation = -3861.761250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.35019 -41.51836 -38.90797 -38.33137 -37.38215 -35.35217 -34.94015 -32.70667 -31.82756 -31.51646 -29.34214 -28.79162 -27.92244 -25.16554 -24.51509 -23.57568 -23.16410 -22.10575 -21.13495 -19.34156 -18.69743 -18.30820 -18.01431 -17.90433 -17.17321 -17.10131 -16.96967 -16.39946 -16.28127 -15.69244 -15.27472 -15.20013 -14.65067 -14.50534 -14.31954 -14.22298 -14.01771 -13.89565 -13.71177 -13.44302 -13.22354 -13.09107 -12.91809 -12.70548 -12.68117 -12.44166 -12.37455 -12.02289 -11.74988 -11.69458 -11.51186 -11.27363 -11.11367 -10.88873 -10.25908 -9.51188 -9.29568 -8.31779 -6.43520 -0.67445 0.23651 1.14348 1.33539 1.40557 1.43095 1.55344 1.72045 1.79259 2.34990 2.69468 3.02129 3.05004 3.07415 3.36930 3.53554 3.74993 3.88347 3.93259 4.07332 4.10761 4.13441 4.24702 4.34770 4.42018 4.49074 4.55621 4.58442 4.65050 4.71168 4.72899 4.86843 4.99316 5.04557 5.14744 5.18509 5.21015 5.28546 5.35268 5.55084 5.61565 5.96081 6.06441 6.50432 6.61078 6.73212 6.80680 7.27898 8.80323 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.002440 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.094561 B =11474.509890 C =12689.833962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.299 3.701 3 N -0.539 5.539 4 C 0.066 3.934 5 C -0.087 4.087 6 C -0.073 4.073 7 C -0.130 4.130 8 C 0.516 3.484 9 O -0.534 6.534 10 O -0.349 6.349 11 C 0.078 3.922 12 C 0.053 3.947 13 O -0.409 6.409 14 C 0.208 3.792 15 C -0.549 4.549 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.981 3.019 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.266 1.266 23 C -0.023 4.023 24 C 0.012 3.988 25 N -0.486 5.486 26 C 0.064 3.936 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.058 0.942 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.271 0.729 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.737 -12.190 -7.470 32.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.035 3.965 3 N -0.261 5.261 4 C -0.055 4.055 5 C -0.107 4.107 6 C -0.094 4.094 7 C -0.133 4.133 8 C 0.363 3.637 9 O -0.426 6.426 10 O -0.265 6.265 11 C 0.005 3.995 12 C -0.023 4.023 13 O -0.329 6.329 14 C 0.133 3.867 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.804 3.196 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.191 1.191 23 C -0.044 4.044 24 C -0.096 4.096 25 N -0.175 5.175 26 C -0.076 4.076 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.080 0.920 39 H 0.166 0.834 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -29.003 -11.812 -7.361 32.170 hybrid contribution 1.277 -0.340 0.388 1.377 sum -27.726 -12.151 -6.973 31.065 Atomic orbital electron populations 1.20700 0.80311 1.06527 1.05943 1.24720 0.97690 0.79934 0.94185 1.70445 1.00799 1.29149 1.25690 1.19580 0.92751 0.91076 1.02057 1.20095 0.88425 1.00925 1.01215 1.20967 0.98889 0.92633 0.96912 1.18695 0.89152 0.94038 1.11399 1.21173 0.85207 0.85382 0.71970 1.90778 1.88539 1.15350 1.47967 1.86637 1.15116 1.41451 1.83328 1.23265 0.78801 0.93388 1.04036 1.22657 0.96617 0.94640 0.88419 1.87870 1.52517 1.54764 1.37776 1.19869 0.84338 0.86168 0.96316 1.21373 1.13209 1.21211 1.02853 0.92298 1.25925 0.94160 0.97132 1.01922 1.70057 1.15742 1.33202 1.37760 0.85211 0.78836 0.77614 0.77937 1.19277 1.19789 1.19079 1.19935 0.87348 1.00359 0.96744 1.18637 0.86432 0.94887 1.09692 1.45443 1.03108 1.09525 1.59446 1.22465 1.03367 0.76413 1.05324 0.87451 0.88062 0.86864 0.83462 0.83708 0.90814 0.87023 0.89792 0.92415 0.98940 0.99186 0.92009 0.83361 0.89061 0.85778 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.17 71.24 0.72 0.34 16 2 C 0.30 4.96 7.85 137.95 1.08 6.04 16 3 N -0.54 -13.44 11.26 -179.81 -2.03 -15.47 16 4 C 0.07 1.77 7.23 39.61 0.29 2.06 16 5 C -0.09 -2.31 10.03 22.22 0.22 -2.09 16 6 C -0.07 -2.04 9.53 22.27 0.21 -1.83 16 7 C -0.13 -3.72 5.88 -20.07 -0.12 -3.84 16 8 C 0.52 16.68 7.89 70.26 0.55 17.24 16 9 O -0.53 -18.23 16.12 19.79 0.32 -17.92 16 10 O -0.35 -12.17 9.41 -53.94 -0.51 -12.67 16 11 C 0.08 2.49 5.85 71.98 0.42 2.91 16 12 C 0.05 1.96 6.33 71.98 0.46 2.41 16 13 O -0.41 -20.37 10.30 -145.57 -1.50 -21.87 16 14 C 0.21 11.76 5.69 71.24 0.41 12.16 16 15 C -0.55 -33.22 9.43 25.60 0.24 -32.98 16 16 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -55.99 13.29 21.44 0.28 -55.70 16 19 Si 0.98 45.04 29.54 68.60 2.03 47.06 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C -0.02 -0.57 9.58 22.60 0.22 -0.35 16 24 C 0.01 0.29 6.86 38.78 0.27 0.55 16 25 N -0.49 -7.74 3.21 -528.96 -1.70 -9.44 16 26 C 0.06 0.35 10.96 127.77 1.40 1.75 16 27 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.11 -0.16 7.01 -2.39 -0.02 -0.17 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.15 4.11 7.58 -2.91 -0.02 4.09 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.15 3.15 7.64 -2.91 -0.02 3.13 16 40 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.12 -0.17 6.99 -2.39 -0.02 -0.19 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -80.41 367.99 4.77 -75.64 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.03 Total: 5.10 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.83 Total: 5.26 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.44 Total: -80.61 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -1.69 Total: -52.45 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -80.41 4.77 -75.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.977 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds