Wall clock time and date at job start Tue Mar 31 2020 11:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48500 * 109.47551 * 275.00426 * 3 2 1 5 5 H 1.48505 * 109.47046 * 35.00408 * 3 2 1 6 6 H 1.48498 * 109.47126 * 155.00245 * 3 2 1 7 7 C 1.37873 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 185.12802 * 7 2 1 9 9 C 1.50698 * 120.00147 * 5.12959 * 7 2 1 10 10 C 1.53040 * 109.46413 * 185.31844 * 9 7 2 11 11 C 1.53183 * 109.31869 * 178.62571 * 10 9 7 12 12 N 1.46930 * 108.77476 * 54.63201 * 11 10 9 13 13 C 1.34770 * 120.63234 * 126.37272 * 12 11 10 14 14 O 1.21585 * 119.99924 * 354.65264 * 13 12 11 15 15 N 1.34774 * 120.00319 * 174.65950 * 13 12 11 16 16 C 1.39248 * 120.00175 * 184.46185 * 15 13 12 17 17 C 1.38858 * 120.16629 * 324.66846 * 16 15 13 18 18 C 1.38007 * 120.07340 * 180.02562 * 17 16 15 19 19 C 1.38593 * 120.42007 * 359.97360 * 18 17 16 20 20 C 1.37769 * 120.33887 * 0.02562 * 19 18 17 21 21 C 1.39759 * 119.91439 * 0.30179 * 20 19 18 22 22 C 1.47363 * 120.20365 * 179.69995 * 21 20 19 23 23 O 1.21518 * 119.99780 * 184.93195 * 22 21 20 24 24 O 1.34751 * 120.00412 * 4.93734 * 22 21 20 25 25 C 1.46932 * 118.73800 * 306.64554 * 12 11 10 26 26 C 1.52758 * 109.00440 * 53.30908 * 25 12 11 27 27 H 0.96994 * 119.99943 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.45763 * 305.28846 * 9 7 2 29 29 H 1.08998 * 109.49787 * 58.66931 * 10 9 7 30 30 H 1.09008 * 109.52030 * 298.59548 * 10 9 7 31 31 H 1.09000 * 109.58746 * 294.84900 * 11 10 9 32 32 H 1.09002 * 109.70763 * 174.48987 * 11 10 9 33 33 H 0.96996 * 120.00064 * 4.45653 * 15 13 12 34 34 H 1.07996 * 119.96323 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.79142 * 180.02562 * 18 17 16 36 36 H 1.07996 * 119.83225 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.04058 * 180.02562 * 20 19 18 38 38 H 0.96698 * 117.00682 * 180.02562 * 24 22 21 39 39 H 1.08996 * 109.58150 * 173.14217 * 25 12 11 40 40 H 1.09004 * 109.58445 * 293.57095 * 25 12 11 41 41 H 1.09007 * 109.56296 * 185.55326 * 26 25 12 42 42 H 1.08997 * 109.38960 * 65.51843 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3909 2.1076 -1.3947 5 1 1.5034 2.6199 0.8032 6 1 3.5956 1.4120 0.5916 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0831 9 6 1.2557 -2.4965 -0.1178 10 6 2.2337 -3.6630 0.0396 11 6 1.4640 -4.9847 -0.0458 12 7 0.6971 -5.0051 -1.2989 13 6 0.8206 -6.0320 -2.1629 14 8 1.6423 -6.9042 -1.9570 15 7 0.0335 -6.0921 -3.2553 16 6 0.0957 -7.1986 -4.0983 17 6 1.3074 -7.8395 -4.3202 18 6 1.3670 -8.9357 -5.1565 19 6 0.2219 -9.4057 -5.7801 20 6 -0.9892 -8.7829 -5.5721 21 6 -1.0645 -7.6675 -4.7333 22 6 -2.3555 -6.9925 -4.5116 23 8 -2.4022 -5.9713 -3.8545 24 8 -3.4843 -7.5075 -5.0373 25 6 -0.2025 -3.8818 -1.5950 26 6 0.5818 -2.5752 -1.4896 27 1 -0.4850 0.8400 0.0004 28 1 0.4971 -2.5507 0.6631 29 1 2.7305 -3.5932 1.0073 30 1 2.9786 -3.6237 -0.7553 31 1 0.7825 -5.0661 0.8010 32 1 2.1647 -5.8196 -0.0326 33 1 -0.5765 -5.3646 -3.4541 34 1 2.2043 -7.4793 -3.8384 35 1 2.3117 -9.4309 -5.3255 36 1 0.2794 -10.2645 -6.4323 37 1 -1.8785 -9.1534 -6.0601 38 1 -4.3069 -7.0293 -4.8651 39 1 -0.5992 -3.9878 -2.6046 40 1 -1.0226 -3.8714 -0.8770 41 1 -0.0972 -1.7310 -1.6102 42 1 1.3417 -2.5452 -2.2704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821320647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:25 Heat of formation + Delta-G solvation = -85.264732 kcal Electronic energy + Delta-G solvation = -26826.206329 eV Core-core repulsion = 22964.330248 eV Total energy + Delta-G solvation = -3861.876082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15410 -40.00418 -38.67249 -36.98981 -36.37351 -34.64792 -33.52835 -31.56417 -31.37298 -30.21358 -29.40272 -26.21078 -24.75774 -23.62321 -22.67259 -22.30860 -21.41202 -20.26144 -18.97648 -18.32929 -18.03894 -17.46300 -16.99731 -16.28824 -15.92885 -15.48435 -15.37348 -14.81379 -14.61427 -14.48853 -14.08267 -13.74469 -13.41561 -13.22810 -13.02574 -12.76527 -12.62690 -12.37952 -12.26747 -11.79007 -11.77246 -11.56198 -11.37430 -10.94749 -10.84729 -10.66096 -10.42896 -10.35168 -10.21231 -9.80930 -9.59182 -9.21378 -9.12091 -8.99934 -8.40853 -8.36963 -7.93063 -6.05540 -4.09069 0.50042 1.20218 2.37285 2.78141 2.80286 3.25789 3.27934 3.35553 3.38807 3.70880 4.05000 4.40962 4.59530 4.77578 4.85646 5.19010 5.19865 5.25420 5.36291 5.55028 5.66285 5.77331 5.89070 6.01615 6.04482 6.09867 6.12737 6.20649 6.24227 6.29823 6.41505 6.44515 6.61706 6.79191 6.86020 6.95344 7.07469 7.12460 7.33999 7.64075 7.66877 7.87826 7.95924 8.09038 8.38489 8.70001 8.95078 9.55602 11.02594 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003225 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.673005 B = 8679.342426 C = 9441.705794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.127 3.873 12 N -0.608 5.608 13 C 0.704 3.296 14 O -0.588 6.588 15 N -0.680 5.680 16 C 0.248 3.752 17 C -0.139 4.139 18 C -0.060 4.060 19 C -0.162 4.162 20 C -0.041 4.041 21 C -0.177 4.177 22 C 0.532 3.468 23 O -0.517 6.517 24 O -0.512 6.512 25 C 0.108 3.892 26 C -0.119 4.119 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.421 0.579 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.415 0.585 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -17.018 -11.768 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.162 4.162 11 C 0.005 3.995 12 N -0.342 5.342 13 C 0.406 3.594 14 O -0.467 6.467 15 N -0.334 5.334 16 C 0.148 3.852 17 C -0.160 4.160 18 C -0.079 4.079 19 C -0.181 4.181 20 C -0.060 4.060 21 C -0.182 4.182 22 C 0.378 3.622 23 O -0.407 6.407 24 O -0.323 6.323 25 C -0.014 4.014 26 C -0.157 4.157 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.267 0.733 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.273 0.727 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.831 -17.314 -11.386 21.073 hybrid contribution -0.565 1.754 -0.027 1.843 sum -4.395 -15.560 -11.413 19.791 Atomic orbital electron populations 1.69920 1.05856 1.26538 1.50572 1.24969 0.94835 0.99060 0.95052 0.86629 0.80028 0.83700 0.77947 1.20790 1.21288 1.19901 1.21181 0.93298 0.90621 1.50033 0.92659 1.18637 0.93694 0.91826 0.92895 1.22026 0.98959 0.94133 1.01061 1.21681 0.94682 0.99930 0.83207 1.47450 1.45842 1.20044 1.20897 1.15842 0.81116 0.82790 0.79629 1.90847 1.38383 1.40785 1.76713 1.43270 1.44136 1.21520 1.24448 1.17536 0.91905 0.87216 0.88517 1.21433 0.97373 0.97727 0.99418 1.21354 0.98801 0.94414 0.93325 1.21067 0.92459 1.01844 1.02773 1.21203 0.98604 0.91850 0.94344 1.18782 0.88928 1.01277 1.09186 1.20739 0.84291 0.81846 0.75302 1.90778 1.86780 1.24788 1.38317 1.84538 1.18549 1.57157 1.72105 1.21875 0.92677 0.87460 0.99411 1.21891 0.99342 0.94053 1.00440 0.92998 0.94783 0.91830 0.92915 0.92068 0.90017 0.73279 0.82953 0.85068 0.85242 0.84375 0.72663 0.92194 0.91499 0.89064 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 11.94 55.43 0.66 -24.04 16 2 C 0.06 1.68 5.26 -17.82 -0.09 1.59 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.68 8.49 -34.44 -0.29 -13.97 16 8 H 0.06 1.47 7.75 -52.49 -0.41 1.07 16 9 C 0.05 1.14 1.94 -91.73 -0.18 0.96 16 10 C -0.12 -2.52 5.30 -26.62 -0.14 -2.66 16 11 C 0.13 2.35 6.44 -3.71 -0.02 2.33 16 12 N -0.61 -11.38 2.98 -178.76 -0.53 -11.91 16 13 C 0.70 13.06 8.14 -86.93 -0.71 12.35 16 14 O -0.59 -11.76 13.20 5.29 0.07 -11.69 16 15 N -0.68 -11.11 4.60 -14.04 -0.06 -11.17 16 16 C 0.25 3.60 6.30 -83.48 -0.53 3.07 16 17 C -0.14 -1.86 8.68 -39.44 -0.34 -2.20 16 18 C -0.06 -0.60 10.03 -39.54 -0.40 -0.99 16 19 C -0.16 -1.40 10.02 -39.62 -0.40 -1.79 16 20 C -0.04 -0.39 9.61 -39.18 -0.38 -0.77 16 21 C -0.18 -2.19 5.89 -104.83 -0.62 -2.80 16 22 C 0.53 6.46 8.25 34.44 0.28 6.75 16 23 O -0.52 -7.64 14.68 -19.28 -0.28 -7.92 16 24 O -0.51 -4.30 12.69 -40.63 -0.52 -4.81 16 25 C 0.11 2.04 6.36 -3.93 -0.02 2.01 16 26 C -0.12 -2.63 5.19 -26.84 -0.14 -2.77 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.03 0.88 8.12 -51.93 -0.42 0.46 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 33 H 0.42 6.80 3.80 -40.82 -0.16 6.65 16 34 H 0.15 2.29 6.24 -52.49 -0.33 1.97 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.14 1.01 7.62 -52.49 -0.40 0.61 16 38 H 0.41 1.73 9.11 45.56 0.42 2.15 16 39 H 0.06 1.03 5.66 -51.93 -0.29 0.74 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 2.24 6.68 -51.92 -0.35 1.89 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -31.44 343.95 -8.87 -40.31 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.39 Total: 9.04 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.97 Total: 1.09 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.06 Total: -47.12 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.73 Total: -24.42 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.44 -8.87 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.953 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds