Wall clock time and date at job start Tue Mar 31 2020 11:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48500 * 109.47551 * 275.00426 * 3 2 1 5 5 H 1.48505 * 109.47046 * 35.00408 * 3 2 1 6 6 H 1.48498 * 109.47126 * 155.00245 * 3 2 1 7 7 C 1.37873 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 185.12802 * 7 2 1 9 9 C 1.50698 * 120.00147 * 5.12959 * 7 2 1 10 10 C 1.53040 * 109.46413 * 185.31844 * 9 7 2 11 11 C 1.53183 * 109.31869 * 178.62571 * 10 9 7 12 12 N 1.46930 * 108.77476 * 54.63201 * 11 10 9 13 13 C 1.34770 * 120.63234 * 126.37272 * 12 11 10 14 14 O 1.21585 * 119.99924 * 354.65264 * 13 12 11 15 15 N 1.34774 * 120.00319 * 174.65950 * 13 12 11 16 16 C 1.39248 * 120.00175 * 184.46185 * 15 13 12 17 17 C 1.38858 * 120.16629 * 324.66846 * 16 15 13 18 18 C 1.38007 * 120.07340 * 180.02562 * 17 16 15 19 19 C 1.38593 * 120.42007 * 359.97360 * 18 17 16 20 20 C 1.37769 * 120.33887 * 0.02562 * 19 18 17 21 21 C 1.39759 * 119.91439 * 0.30179 * 20 19 18 22 22 C 1.47363 * 120.20365 * 179.69995 * 21 20 19 23 23 O 1.21518 * 119.99780 * 184.93195 * 22 21 20 24 24 O 1.34751 * 120.00412 * 4.93734 * 22 21 20 25 25 C 1.46932 * 118.73800 * 306.64554 * 12 11 10 26 26 C 1.52758 * 109.00440 * 53.30908 * 25 12 11 27 27 H 0.96994 * 119.99943 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.45763 * 305.28846 * 9 7 2 29 29 H 1.08998 * 109.49787 * 58.66931 * 10 9 7 30 30 H 1.09008 * 109.52030 * 298.59548 * 10 9 7 31 31 H 1.09000 * 109.58746 * 294.84900 * 11 10 9 32 32 H 1.09002 * 109.70763 * 174.48987 * 11 10 9 33 33 H 0.96996 * 120.00064 * 4.45653 * 15 13 12 34 34 H 1.07996 * 119.96323 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.79142 * 180.02562 * 18 17 16 36 36 H 1.07996 * 119.83225 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.04058 * 180.02562 * 20 19 18 38 38 H 0.96698 * 117.00682 * 180.02562 * 24 22 21 39 39 H 1.08996 * 109.58150 * 173.14217 * 25 12 11 40 40 H 1.09004 * 109.58445 * 293.57095 * 25 12 11 41 41 H 1.09007 * 109.56296 * 185.55326 * 26 25 12 42 42 H 1.08997 * 109.38960 * 65.51843 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3909 2.1076 -1.3947 5 1 1.5034 2.6199 0.8032 6 1 3.5956 1.4120 0.5916 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0831 9 6 1.2557 -2.4965 -0.1178 10 6 2.2337 -3.6630 0.0396 11 6 1.4640 -4.9847 -0.0458 12 7 0.6971 -5.0051 -1.2989 13 6 0.8206 -6.0320 -2.1629 14 8 1.6423 -6.9042 -1.9570 15 7 0.0335 -6.0921 -3.2553 16 6 0.0957 -7.1986 -4.0983 17 6 1.3074 -7.8395 -4.3202 18 6 1.3670 -8.9357 -5.1565 19 6 0.2219 -9.4057 -5.7801 20 6 -0.9892 -8.7829 -5.5721 21 6 -1.0645 -7.6675 -4.7333 22 6 -2.3555 -6.9925 -4.5116 23 8 -2.4022 -5.9713 -3.8545 24 8 -3.4843 -7.5075 -5.0373 25 6 -0.2025 -3.8818 -1.5950 26 6 0.5818 -2.5752 -1.4896 27 1 -0.4850 0.8400 0.0004 28 1 0.4971 -2.5507 0.6631 29 1 2.7305 -3.5932 1.0073 30 1 2.9786 -3.6237 -0.7553 31 1 0.7825 -5.0661 0.8010 32 1 2.1647 -5.8196 -0.0326 33 1 -0.5765 -5.3646 -3.4541 34 1 2.2043 -7.4793 -3.8384 35 1 2.3117 -9.4309 -5.3255 36 1 0.2794 -10.2645 -6.4323 37 1 -1.8785 -9.1534 -6.0601 38 1 -4.3069 -7.0293 -4.8651 39 1 -0.5992 -3.9878 -2.6046 40 1 -1.0226 -3.8714 -0.8770 41 1 -0.0972 -1.7310 -1.6102 42 1 1.3417 -2.5452 -2.2704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:24 Heat of formation + Delta-G solvation = -104.324644 kcal Electronic energy + Delta-G solvation = -26827.032829 eV Core-core repulsion = 22964.330248 eV Total energy + Delta-G solvation = -3862.702582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27430 -41.13524 -39.70374 -38.48451 -37.24373 -35.85450 -35.34264 -33.11629 -32.42487 -31.85324 -30.49593 -28.00484 -25.71798 -25.04446 -24.19188 -23.66932 -22.39056 -21.70921 -20.47874 -19.42048 -19.12402 -18.58032 -18.29075 -18.00774 -16.97833 -16.77160 -16.56998 -16.41000 -15.76458 -15.65209 -15.19523 -15.04849 -14.92965 -14.65168 -14.39737 -14.29150 -14.07302 -13.69723 -13.37268 -13.21185 -13.00075 -12.81297 -12.62452 -12.56728 -12.50412 -12.19862 -12.06510 -11.80807 -11.52436 -11.45712 -11.11597 -10.96343 -10.85413 -10.43822 -10.07736 -9.75452 -9.15684 -8.11964 -6.22163 -0.37574 0.33159 1.40090 1.42357 1.47699 1.50178 1.51799 1.91477 2.02548 2.43239 2.69052 2.79964 3.17449 3.75494 3.95371 4.04246 4.09585 4.15896 4.27517 4.33779 4.37855 4.42838 4.52660 4.55371 4.62878 4.82493 4.89777 4.95065 5.04028 5.17210 5.20033 5.27512 5.33144 5.41188 5.42679 5.50849 5.55237 5.62989 5.89386 5.93481 5.95265 6.00257 6.35908 6.69046 6.88363 6.91498 7.30126 7.45275 8.94975 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003225 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.673005 B = 8679.342426 C = 9441.705794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.613 5.613 13 C 0.702 3.298 14 O -0.606 6.606 15 N -0.678 5.678 16 C 0.209 3.791 17 C -0.160 4.160 18 C -0.054 4.054 19 C -0.146 4.146 20 C -0.033 4.033 21 C -0.187 4.187 22 C 0.534 3.466 23 O -0.551 6.551 24 O -0.497 6.497 25 C 0.122 3.878 26 C -0.107 4.107 27 H 0.261 0.739 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.420 0.580 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.434 0.566 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -19.129 -13.621 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.348 5.348 13 C 0.405 3.595 14 O -0.487 6.487 15 N -0.331 5.331 16 C 0.111 3.889 17 C -0.180 4.180 18 C -0.072 4.072 19 C -0.164 4.164 20 C -0.052 4.052 21 C -0.191 4.191 22 C 0.381 3.619 23 O -0.444 6.444 24 O -0.310 6.310 25 C 0.000 4.000 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.265 0.735 34 H 0.145 0.855 35 H 0.177 0.823 36 H 0.189 0.811 37 H 0.185 0.815 38 H 0.296 0.704 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.217 -19.462 -13.278 23.935 hybrid contribution -0.498 2.277 0.437 2.371 sum -4.715 -17.186 -12.841 21.965 Atomic orbital electron populations 1.70028 1.06984 1.27229 1.51145 1.25667 0.95627 1.02092 0.94827 0.85685 0.78914 0.79937 0.77968 1.20399 1.20939 1.19467 1.21522 0.93303 0.92182 1.50107 0.93199 1.18593 0.93608 0.92245 0.92811 1.21867 0.98152 0.93988 1.01096 1.21600 0.94862 0.98754 0.83685 1.47428 1.46007 1.20213 1.21178 1.15940 0.81211 0.82389 0.80005 1.90824 1.39216 1.41351 1.77294 1.43151 1.43514 1.22341 1.24141 1.17863 0.93363 0.87711 0.89946 1.21367 0.96224 0.99436 1.01017 1.21699 1.00806 0.92922 0.91799 1.21548 0.91194 1.02021 1.01632 1.21609 1.00223 0.90353 0.92971 1.18971 0.88401 1.02236 1.09530 1.20796 0.85109 0.81255 0.74705 1.90761 1.87330 1.26338 1.39986 1.84483 1.18632 1.56818 1.71083 1.21632 0.92019 0.85911 1.00463 1.21652 0.98720 0.95041 0.99209 0.92970 0.97325 0.91151 0.93735 0.91047 0.89332 0.73493 0.85487 0.82346 0.81127 0.81525 0.70408 0.90535 0.91550 0.91616 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.87 11.94 21.45 0.26 -51.61 16 2 C 0.02 0.93 5.26 84.65 0.45 1.37 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -29.07 8.49 25.60 0.22 -28.85 16 8 H 0.05 2.71 7.75 -2.91 -0.02 2.68 16 9 C 0.05 2.26 1.94 -11.51 -0.02 2.24 16 10 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 11 C 0.13 4.96 6.44 86.36 0.56 5.52 16 12 N -0.61 -23.37 2.98 -837.75 -2.50 -25.87 16 13 C 0.70 26.57 8.14 179.06 1.46 28.03 16 14 O -0.61 -24.71 13.20 -3.98 -0.05 -24.76 16 15 N -0.68 -22.59 4.60 -316.60 -1.46 -24.04 16 16 C 0.21 6.04 6.30 38.62 0.24 6.28 16 17 C -0.16 -4.22 8.68 22.36 0.19 -4.03 16 18 C -0.05 -0.93 10.03 22.30 0.22 -0.70 16 19 C -0.15 -1.87 10.02 22.24 0.22 -1.64 16 20 C -0.03 -0.51 9.61 22.53 0.22 -0.30 16 21 C -0.19 -4.33 5.89 -20.00 -0.12 -4.45 16 22 C 0.53 12.29 8.25 70.22 0.58 12.87 16 23 O -0.55 -16.23 14.68 19.78 0.29 -15.94 16 24 O -0.50 -7.06 12.69 -56.62 -0.72 -7.78 16 25 C 0.12 4.73 6.36 86.22 0.55 5.27 16 26 C -0.11 -4.93 5.19 30.53 0.16 -4.78 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 28 H 0.01 0.46 8.12 -2.39 -0.02 0.44 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 3.20 6.99 -2.39 -0.02 3.18 16 33 H 0.42 13.88 3.80 -92.71 -0.35 13.53 16 34 H 0.13 3.97 6.24 -2.91 -0.02 3.95 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.17 1.62 7.62 -2.91 -0.02 1.59 16 38 H 0.43 2.57 9.11 -74.06 -0.67 1.90 16 39 H 0.08 2.70 5.66 -2.39 -0.01 2.69 16 40 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.07 3.35 6.68 -2.38 -0.02 3.34 16 42 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.96 343.95 2.98 -66.98 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.05 Total: 25.30 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.08 Total: 12.30 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.70 Total: -101.52 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.48 Total: -48.48 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.96 2.98 -66.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.347 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds