Wall clock time and date at job start Tue Mar 31 2020 13:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37979 * 120.07385 * 2 1 4 4 C 1.38332 * 120.14473 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29276 * 359.97438 * 4 3 2 6 6 N 1.48016 * 119.92541 * 180.02562 * 5 4 3 7 7 O 1.21795 * 120.00778 * 6.24983 * 6 5 4 8 8 O 1.21808 * 119.99953 * 186.25760 * 6 5 4 9 9 C 1.37932 * 120.14367 * 359.76142 * 5 4 3 10 10 C 1.50709 * 120.07417 * 180.25656 * 9 5 4 11 11 C 1.39552 * 120.07459 * 179.97438 * 2 1 3 12 12 C 1.47852 * 120.14156 * 0.02562 * 11 2 1 13 13 O 1.21560 * 119.99733 * 90.00319 * 12 11 2 14 14 N 1.34774 * 120.00052 * 269.99901 * 12 11 2 15 15 C 1.46495 * 119.99891 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46834 * 175.81651 * 15 14 12 17 17 C 1.50705 * 115.54894 * 56.83070 * 16 15 14 18 18 H 1.07999 * 119.99630 * 267.02301 * 17 16 15 19 19 C 1.37880 * 119.99912 * 87.01977 * 17 16 15 20 20 N 1.31511 * 119.99904 * 351.80121 * 19 17 16 21 21 Si 1.86797 * 119.99738 * 171.80782 * 19 17 16 22 22 H 1.48502 * 109.47381 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47391 * 119.99824 * 21 19 17 24 24 H 1.48501 * 109.47065 * 239.99930 * 21 19 17 25 25 C 1.52994 * 117.50160 * 271.15689 * 16 15 14 26 26 C 1.53004 * 117.49861 * 202.49491 * 16 15 14 27 27 H 1.09002 * 109.46818 * 270.02362 * 1 2 3 28 28 H 1.08999 * 109.47015 * 30.01990 * 1 2 3 29 29 H 1.08996 * 109.46794 * 150.01685 * 1 2 3 30 30 H 1.08006 * 119.92717 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.85508 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47001 * 277.05779 * 10 9 5 33 33 H 1.08998 * 109.46883 * 37.05507 * 10 9 5 34 34 H 1.09002 * 109.46956 * 157.04917 * 10 9 5 35 35 H 0.96996 * 119.99499 * 0.27631 * 14 12 11 36 36 H 1.08998 * 109.47601 * 295.81572 * 15 14 12 37 37 H 1.09001 * 109.47093 * 55.82047 * 15 14 12 38 38 H 0.97006 * 119.99514 * 185.01066 * 20 19 17 39 39 H 1.08996 * 117.50122 * 359.97438 * 25 16 15 40 40 H 1.09001 * 117.50001 * 145.02320 * 25 16 15 41 41 H 1.09002 * 117.49799 * 214.98135 * 26 16 15 42 42 H 1.08999 * 117.49837 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0018 0.0016 6 7 5.7614 0.0131 0.0027 7 8 6.3624 1.0662 0.1176 8 8 6.3786 -1.0309 -0.1113 9 6 3.6023 -1.1988 0.0071 10 6 4.3657 -2.4982 0.0141 11 6 2.2064 -1.2077 0.0005 12 6 1.4720 -2.4909 0.0005 13 8 1.1706 -3.0186 -1.0522 14 7 1.1368 -3.0755 1.1677 15 6 0.4096 -4.3472 1.1677 16 6 0.2470 -4.8417 2.6064 17 6 -0.4438 -3.8883 3.5472 18 1 0.1384 -3.2013 4.1434 19 6 -1.8190 -3.8932 3.6467 20 7 -2.5362 -4.6107 2.8100 21 14 -2.6632 -2.8805 4.9700 22 1 -1.6398 -2.1687 5.7770 23 1 -3.5687 -1.8905 4.3335 24 1 -3.4522 -3.7776 5.8520 25 6 1.3601 -5.7196 3.1818 26 6 0.0085 -6.3384 2.8164 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6585 2.1294 0.0004 31 1 4.1183 2.1331 0.0010 32 1 4.6593 -2.7526 -1.0043 33 1 5.2564 -2.3930 0.6335 34 1 3.7335 -3.2888 0.4184 35 1 1.3739 -2.6523 2.0077 36 1 -0.5735 -4.2036 0.7196 37 1 0.9676 -5.0848 0.5909 38 1 -3.5046 -4.5580 2.8326 39 1 2.2080 -5.9454 2.5353 40 1 1.5925 -5.6080 4.2409 41 1 -0.6478 -6.6334 3.6352 42 1 -0.0331 -6.9706 1.9295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822627415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:47 Heat of formation + Delta-G solvation = 2.477505 kcal Electronic energy + Delta-G solvation = -26857.683550 eV Core-core repulsion = 22999.612257 eV Total energy + Delta-G solvation = -3858.071293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.34458 -40.49131 -38.52833 -36.78720 -36.73326 -34.14843 -33.56520 -32.59234 -32.10121 -28.82325 -28.11798 -26.51039 -25.42880 -25.00568 -23.32890 -21.55645 -21.29051 -20.35666 -19.64630 -18.73555 -18.71114 -17.67482 -16.81786 -16.47262 -16.21325 -15.61650 -15.34857 -14.82624 -14.30301 -14.20534 -14.09407 -13.80195 -13.38485 -13.27424 -13.10195 -12.81487 -12.45262 -12.32211 -12.15250 -11.91397 -11.85182 -11.74918 -11.46717 -11.19886 -11.15202 -11.04616 -10.72261 -10.63577 -10.37594 -9.95897 -9.62332 -9.44990 -9.30154 -9.08801 -8.64174 -8.51339 -8.22918 -6.21845 -4.30924 -0.26717 0.60011 1.19360 1.29823 2.78473 2.92216 3.13391 3.24199 3.25719 3.48871 4.12316 4.22304 4.26601 4.29664 4.55983 4.75336 4.94240 5.06084 5.15149 5.21868 5.23491 5.35987 5.46578 5.48107 5.53273 5.76812 5.80989 5.89944 5.92639 5.97737 6.10837 6.20222 6.33795 6.39502 6.43312 6.59929 6.70109 6.98486 7.02526 7.25435 7.35797 7.59414 7.67618 8.00242 8.19699 8.52977 8.70653 9.36758 10.85684 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.003906 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.798980 B = 7166.148522 C = 7845.802947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 C -0.131 4.131 4 C -0.038 4.038 5 C -0.062 4.062 6 N 0.037 4.963 7 O -0.173 6.173 8 O -0.159 6.159 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.124 4.124 12 C 0.556 3.444 13 O -0.540 6.540 14 N -0.686 5.686 15 C 0.161 3.839 16 C 0.025 3.975 17 C -0.504 4.504 18 H 0.060 0.940 19 C 0.077 3.923 20 N -0.871 5.871 21 Si 0.887 3.113 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.282 1.282 25 C -0.210 4.210 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 9.961 -4.366 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 C -0.149 4.149 4 C -0.057 4.057 5 C -0.146 4.146 6 N 0.553 4.447 7 O -0.385 6.385 8 O -0.373 6.373 9 C 0.022 3.978 10 C -0.194 4.194 11 C -0.128 4.128 12 C 0.339 3.661 13 O -0.419 6.419 14 N -0.334 5.334 15 C 0.038 3.962 16 C 0.024 3.976 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.128 4.128 20 N -0.506 5.506 21 Si 0.715 3.285 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.248 4.248 26 C -0.184 4.184 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.911 9.436 -5.100 12.760 hybrid contribution -0.143 0.790 1.092 1.355 sum 6.768 10.226 -4.008 12.901 Atomic orbital electron populations 1.21104 0.88884 1.04572 1.04512 1.20460 0.97646 0.91369 0.89466 1.21003 0.92352 0.98592 1.02963 1.21088 0.94603 0.96920 0.93087 1.20731 0.79224 0.96233 1.18379 1.43492 1.03427 1.00295 0.97489 1.94517 1.69650 1.20529 1.53813 1.94490 1.68720 1.21208 1.52888 1.19790 0.92624 0.94775 0.90653 1.21396 1.00980 0.92102 1.04929 1.19944 0.91844 0.95203 1.05776 1.17824 0.79767 0.83512 0.85008 1.90808 1.55567 1.64179 1.31331 1.46046 1.55640 1.24305 1.07384 1.21078 0.95156 0.82010 0.97921 1.19025 0.96405 0.90775 0.91379 1.20338 0.90944 1.19897 1.22953 0.92158 1.24972 0.97464 0.94876 0.95469 1.69983 1.05939 1.39256 1.35467 0.86620 0.79670 0.80001 0.82213 1.19693 1.21006 1.20820 1.23070 0.91955 1.09467 1.00265 1.22481 0.97195 0.97325 1.01399 0.88687 0.90094 0.89774 0.83084 0.82797 0.88783 0.87928 0.90358 0.76037 0.90779 0.93941 0.92789 0.91574 0.90288 0.89754 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.62 36.01 0.35 -1.16 16 2 C 0.01 0.14 5.91 -104.22 -0.62 -0.48 16 3 C -0.13 -1.21 9.69 -39.64 -0.38 -1.60 16 4 C -0.04 -0.38 9.55 -39.49 -0.38 -0.76 16 5 C -0.06 -0.79 6.82 -80.01 -0.55 -1.34 16 6 N 0.04 0.52 4.45 33.93 0.15 0.67 16 7 O -0.17 -2.42 18.45 -29.46 -0.54 -2.97 16 8 O -0.16 -2.29 15.36 -29.46 -0.45 -2.74 16 9 C 0.02 0.32 5.91 -104.23 -0.62 -0.30 16 10 C -0.14 -1.81 8.37 36.01 0.30 -1.51 16 11 C -0.12 -1.76 5.63 -104.97 -0.59 -2.35 16 12 C 0.56 9.60 4.08 -12.33 -0.05 9.55 16 13 O -0.54 -11.15 17.10 5.31 0.09 -11.06 16 14 N -0.69 -12.22 5.42 -61.25 -0.33 -12.56 16 15 C 0.16 3.34 5.55 -4.04 -0.02 3.31 16 16 C 0.02 0.54 1.53 -155.66 -0.24 0.31 16 17 C -0.50 -12.01 8.20 -34.44 -0.28 -12.29 16 18 H 0.06 1.42 7.83 -52.49 -0.41 1.01 16 19 C 0.08 1.90 5.37 -17.82 -0.10 1.81 16 20 N -0.87 -22.65 12.90 55.43 0.71 -21.93 16 21 Si 0.89 19.28 29.55 -169.99 -5.02 14.26 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.21 -4.13 9.94 -26.70 -0.27 -4.40 16 26 C -0.15 -3.14 9.40 -26.69 -0.25 -3.40 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 0.67 8.09 -51.93 -0.42 0.26 16 29 H 0.08 1.16 7.08 -51.93 -0.37 0.80 16 30 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.15 1.23 7.61 -52.49 -0.40 0.83 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.29 5.88 -51.93 -0.31 0.98 16 34 H 0.08 1.08 6.84 -51.93 -0.36 0.72 16 35 H 0.40 6.84 8.02 -40.82 -0.33 6.52 16 36 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -28.04 362.94 -9.14 -37.18 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.52 Total: 8.30 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.69 Total: -14.60 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.53 Total: -33.82 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.91 Total: -16.77 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.04 -9.14 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822627415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.654 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds