Wall clock time and date at job start Tue Mar 31 2020 13:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37979 * 120.07385 * 2 1 4 4 C 1.38332 * 120.14473 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29276 * 359.97438 * 4 3 2 6 6 N 1.48016 * 119.92541 * 180.02562 * 5 4 3 7 7 O 1.21795 * 120.00778 * 6.24983 * 6 5 4 8 8 O 1.21808 * 119.99953 * 186.25760 * 6 5 4 9 9 C 1.37932 * 120.14367 * 359.76142 * 5 4 3 10 10 C 1.50709 * 120.07417 * 180.25656 * 9 5 4 11 11 C 1.39552 * 120.07459 * 179.97438 * 2 1 3 12 12 C 1.47852 * 120.14156 * 0.02562 * 11 2 1 13 13 O 1.21560 * 119.99733 * 90.00319 * 12 11 2 14 14 N 1.34774 * 120.00052 * 269.99901 * 12 11 2 15 15 C 1.46495 * 119.99891 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46834 * 175.81651 * 15 14 12 17 17 C 1.50705 * 115.54894 * 56.83070 * 16 15 14 18 18 H 1.07999 * 119.99630 * 267.02301 * 17 16 15 19 19 C 1.37880 * 119.99912 * 87.01977 * 17 16 15 20 20 N 1.31511 * 119.99904 * 351.80121 * 19 17 16 21 21 Si 1.86797 * 119.99738 * 171.80782 * 19 17 16 22 22 H 1.48502 * 109.47381 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47391 * 119.99824 * 21 19 17 24 24 H 1.48501 * 109.47065 * 239.99930 * 21 19 17 25 25 C 1.52994 * 117.50160 * 271.15689 * 16 15 14 26 26 C 1.53004 * 117.49861 * 202.49491 * 16 15 14 27 27 H 1.09002 * 109.46818 * 270.02362 * 1 2 3 28 28 H 1.08999 * 109.47015 * 30.01990 * 1 2 3 29 29 H 1.08996 * 109.46794 * 150.01685 * 1 2 3 30 30 H 1.08006 * 119.92717 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.85508 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47001 * 277.05779 * 10 9 5 33 33 H 1.08998 * 109.46883 * 37.05507 * 10 9 5 34 34 H 1.09002 * 109.46956 * 157.04917 * 10 9 5 35 35 H 0.96996 * 119.99499 * 0.27631 * 14 12 11 36 36 H 1.08998 * 109.47601 * 295.81572 * 15 14 12 37 37 H 1.09001 * 109.47093 * 55.82047 * 15 14 12 38 38 H 0.97006 * 119.99514 * 185.01066 * 20 19 17 39 39 H 1.08996 * 117.50122 * 359.97438 * 25 16 15 40 40 H 1.09001 * 117.50001 * 145.02320 * 25 16 15 41 41 H 1.09002 * 117.49799 * 214.98135 * 26 16 15 42 42 H 1.08999 * 117.49837 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0018 0.0016 6 7 5.7614 0.0131 0.0027 7 8 6.3624 1.0662 0.1176 8 8 6.3786 -1.0309 -0.1113 9 6 3.6023 -1.1988 0.0071 10 6 4.3657 -2.4982 0.0141 11 6 2.2064 -1.2077 0.0005 12 6 1.4720 -2.4909 0.0005 13 8 1.1706 -3.0186 -1.0522 14 7 1.1368 -3.0755 1.1677 15 6 0.4096 -4.3472 1.1677 16 6 0.2470 -4.8417 2.6064 17 6 -0.4438 -3.8883 3.5472 18 1 0.1384 -3.2013 4.1434 19 6 -1.8190 -3.8932 3.6467 20 7 -2.5362 -4.6107 2.8100 21 14 -2.6632 -2.8805 4.9700 22 1 -1.6398 -2.1687 5.7770 23 1 -3.5687 -1.8905 4.3335 24 1 -3.4522 -3.7776 5.8520 25 6 1.3601 -5.7196 3.1818 26 6 0.0085 -6.3384 2.8164 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6585 2.1294 0.0004 31 1 4.1183 2.1331 0.0010 32 1 4.6593 -2.7526 -1.0043 33 1 5.2564 -2.3930 0.6335 34 1 3.7335 -3.2888 0.4184 35 1 1.3739 -2.6523 2.0077 36 1 -0.5735 -4.2036 0.7196 37 1 0.9676 -5.0848 0.5909 38 1 -3.5046 -4.5580 2.8326 39 1 2.2080 -5.9454 2.5353 40 1 1.5925 -5.6080 4.2409 41 1 -0.6478 -6.6334 3.6352 42 1 -0.0331 -6.9706 1.9295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822627415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:46 Heat of formation + Delta-G solvation = -11.803904 kcal Electronic energy + Delta-G solvation = -26858.302838 eV Core-core repulsion = 22999.612257 eV Total energy + Delta-G solvation = -3858.690581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.37619 -41.65141 -39.81826 -38.44560 -37.79933 -35.09715 -35.09372 -34.00053 -33.59507 -29.78144 -29.24968 -28.06824 -27.19301 -25.96926 -24.48654 -22.96736 -22.52791 -21.62748 -21.29657 -19.97259 -19.75410 -18.71306 -18.30422 -17.81178 -17.48212 -16.90910 -16.60460 -16.46835 -15.83004 -15.44390 -15.24557 -14.92478 -14.69138 -14.43204 -14.34596 -14.13818 -13.70687 -13.53429 -13.37778 -13.18946 -13.07624 -12.95516 -12.85079 -12.84355 -12.52548 -12.33778 -12.26866 -12.06557 -11.77089 -11.56582 -11.20398 -10.85489 -10.48996 -10.42701 -10.23610 -10.15997 -9.90859 -8.10952 -6.24077 -1.26623 -0.33491 0.19803 0.29680 1.40093 1.41792 1.46625 1.54221 1.96505 2.19830 2.41815 3.16912 3.19950 3.24874 3.38423 3.48283 3.64085 3.75640 3.97931 4.18370 4.21723 4.31533 4.44167 4.48196 4.51058 4.59805 4.62520 4.65966 4.67856 4.78286 4.87786 4.96076 4.97773 4.99573 5.09287 5.20616 5.25344 5.43804 5.44567 5.54220 5.62637 5.76436 6.35042 6.51718 6.54809 6.82963 7.11296 7.45961 8.96539 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.003906 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.798980 B = 7166.148522 C = 7845.802947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 C -0.109 4.109 4 C -0.024 4.024 5 C -0.073 4.073 6 N 0.037 4.963 7 O -0.166 6.166 8 O -0.185 6.185 9 C 0.015 3.985 10 C -0.135 4.135 11 C -0.145 4.145 12 C 0.564 3.436 13 O -0.579 6.579 14 N -0.682 5.682 15 C 0.177 3.823 16 C 0.006 3.994 17 C -0.505 4.505 18 H 0.063 0.937 19 C 0.033 3.967 20 N -0.903 5.903 21 Si 0.945 3.055 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.289 1.289 25 C -0.182 4.182 26 C -0.157 4.157 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.198 0.802 31 H 0.185 0.815 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.259 0.741 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 12.994 -3.764 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 C -0.127 4.127 4 C -0.042 4.042 5 C -0.156 4.156 6 N 0.551 4.449 7 O -0.381 6.381 8 O -0.394 6.394 9 C 0.013 3.987 10 C -0.191 4.191 11 C -0.149 4.149 12 C 0.350 3.650 13 O -0.461 6.461 14 N -0.330 5.330 15 C 0.053 3.947 16 C 0.005 3.995 17 C -0.542 4.542 18 H 0.081 0.919 19 C -0.169 4.169 20 N -0.540 5.540 21 Si 0.771 3.229 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.216 1.216 25 C -0.219 4.219 26 C -0.195 4.195 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.068 0.932 30 H 0.215 0.785 31 H 0.202 0.798 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.719 12.439 -4.482 15.310 hybrid contribution -0.377 -0.088 0.887 0.968 sum 7.342 12.351 -3.595 14.811 Atomic orbital electron populations 1.21127 0.88599 1.04686 1.04551 1.20670 0.97957 0.91444 0.88952 1.21444 0.91915 0.99072 1.00248 1.21545 0.95012 0.96946 0.90744 1.20872 0.78443 0.96908 1.19424 1.43662 1.03959 1.00105 0.97192 1.94492 1.70042 1.20424 1.53172 1.94498 1.69227 1.21406 1.54258 1.19725 0.92363 0.95280 0.91370 1.21345 1.00879 0.92026 1.04864 1.19662 0.92012 0.94329 1.08891 1.18215 0.78793 0.84141 0.83890 1.90776 1.57107 1.65594 1.32584 1.45905 1.55420 1.23558 1.08073 1.20667 0.93655 0.83335 0.97029 1.19081 0.98050 0.90683 0.91667 1.20594 0.91104 1.19816 1.22723 0.91921 1.25616 0.98238 0.96012 0.97005 1.70102 1.05860 1.40962 1.37126 0.85713 0.78692 0.78580 0.79871 1.18740 1.20846 1.21556 1.23054 0.91488 1.06563 1.00799 1.22413 0.98504 0.97443 1.01124 0.88637 0.86467 0.93175 0.78475 0.79824 0.88946 0.87523 0.91582 0.75370 0.94393 0.93979 0.93135 0.89467 0.89760 0.91797 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.62 71.24 0.69 -2.05 16 2 C 0.01 0.23 5.91 -19.61 -0.12 0.11 16 3 C -0.11 -1.50 9.69 22.23 0.22 -1.28 16 4 C -0.02 -0.38 9.55 22.33 0.21 -0.17 16 5 C -0.07 -1.69 6.82 36.34 0.25 -1.44 16 6 N 0.04 0.98 4.45 -46.55 -0.21 0.77 16 7 O -0.17 -4.25 18.45 18.89 0.35 -3.90 16 8 O -0.19 -5.25 15.36 18.88 0.29 -4.96 16 9 C 0.01 0.39 5.91 -19.61 -0.12 0.27 16 10 C -0.14 -3.58 8.37 71.24 0.60 -2.99 16 11 C -0.15 -4.03 5.63 -20.09 -0.11 -4.14 16 12 C 0.56 19.91 4.08 86.79 0.35 20.27 16 13 O -0.58 -24.88 17.10 -3.91 -0.07 -24.94 16 14 N -0.68 -24.77 5.42 -465.97 -2.52 -27.29 16 15 C 0.18 7.56 5.55 86.38 0.48 8.04 16 16 C 0.01 0.26 1.53 -52.93 -0.08 0.18 16 17 C -0.50 -24.05 8.20 25.60 0.21 -23.84 16 18 H 0.06 2.90 7.83 -2.91 -0.02 2.88 16 19 C 0.03 1.63 5.37 84.66 0.45 2.08 16 20 N -0.90 -48.08 12.90 21.45 0.28 -47.81 16 21 Si 0.94 39.48 29.55 68.60 2.03 41.51 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.18 -6.98 9.94 30.62 0.30 -6.68 16 26 C -0.16 -6.84 9.40 30.62 0.29 -6.55 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 28 H 0.12 1.51 8.09 -2.39 -0.02 1.49 16 29 H 0.05 1.39 7.08 -2.39 -0.02 1.37 16 30 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.18 1.91 7.61 -2.91 -0.02 1.89 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 2.70 5.88 -2.39 -0.01 2.68 16 34 H 0.07 1.87 6.84 -2.39 -0.02 1.85 16 35 H 0.41 13.90 8.02 -92.71 -0.74 13.16 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.26 13.35 8.32 -92.70 -0.77 12.58 16 39 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -62.40 362.94 4.08 -58.31 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.32 Total: 26.50 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.62 Total: -18.19 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.46 Total: -74.33 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: 0.57 Total: -33.81 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -62.40 4.08 -58.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822627415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.510 kcal (2) G-P(sol) polarization free energy of solvation -62.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds