Wall clock time and date at job start Tue Mar 31 2020 13:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00103 * 2 1 4 4 N 1.46497 * 109.46827 * 125.00289 * 3 2 1 5 5 C 1.46504 * 120.00011 * 269.99797 * 4 3 2 6 6 C 1.50702 * 109.47509 * 270.00674 * 5 4 3 7 7 H 1.08001 * 119.99620 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00594 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99764 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47079 * 120.00193 * 10 8 6 13 13 H 1.48500 * 109.46801 * 239.99889 * 10 8 6 14 14 C 1.34775 * 120.00400 * 90.00696 * 4 3 2 15 15 O 1.21546 * 120.00316 * 179.97438 * 14 4 3 16 16 C 1.47852 * 119.99588 * 359.97438 * 14 4 3 17 17 C 1.39594 * 120.14366 * 270.00846 * 16 14 4 18 18 C 1.50696 * 120.07516 * 359.97438 * 17 16 14 19 19 C 1.37934 * 119.84879 * 180.02562 * 17 16 14 20 20 C 1.38376 * 120.14938 * 359.97438 * 19 17 16 21 21 C 1.38340 * 120.29301 * 0.25123 * 20 19 17 22 22 N 1.48003 * 119.92980 * 179.72675 * 21 20 19 23 23 O 1.21803 * 120.00625 * 36.75908 * 22 21 20 24 24 O 1.21801 * 120.00115 * 216.76297 * 22 21 20 25 25 C 1.37980 * 120.14017 * 359.49451 * 21 20 19 26 26 C 1.50703 * 120.07405 * 180.27208 * 25 21 20 27 27 H 1.08001 * 119.99993 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99789 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46679 * 5.00449 * 3 2 1 31 31 H 1.08992 * 109.47405 * 245.00547 * 3 2 1 32 32 H 1.09001 * 109.46895 * 30.00742 * 5 4 3 33 33 H 1.09002 * 109.47124 * 150.00031 * 5 4 3 34 34 H 0.96995 * 120.00294 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47405 * 270.02699 * 18 17 16 36 36 H 1.09002 * 109.47407 * 30.02853 * 18 17 16 37 37 H 1.09003 * 109.47352 * 150.03018 * 18 17 16 38 38 H 1.08005 * 119.92892 * 180.02562 * 19 17 16 39 39 H 1.08003 * 119.85536 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.47331 * 275.83115 * 26 25 21 41 41 H 1.09002 * 109.46482 * 35.83049 * 26 25 21 42 42 H 1.09000 * 109.47182 * 155.82483 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3040 3.8368 1.6369 8 6 2.5194 4.0663 3.6087 9 7 1.9601 3.4655 4.6363 10 14 2.8738 5.8991 3.6779 11 1 3.5025 6.3302 2.4035 12 1 1.6037 6.6416 3.8799 13 1 3.7975 6.1824 4.8057 14 6 4.2498 0.8662 0.9823 15 8 5.0217 0.8887 1.9209 16 6 4.6885 0.3279 -0.3229 17 6 4.5273 -1.0283 -0.6119 18 6 3.9058 -1.9488 0.4066 19 6 4.9393 -1.5241 -1.8313 20 6 5.5107 -0.6803 -2.7675 21 6 5.6776 0.6638 -2.4857 22 7 6.2953 1.5578 -3.4905 23 8 6.0648 1.3939 -4.6752 24 8 7.0341 2.4576 -3.1327 25 6 5.2650 1.1735 -1.2717 26 6 5.4419 2.6392 -0.9686 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 1.4889 1.6965 2.5460 33 1 3.0991 1.3601 3.2260 34 1 1.7319 3.9740 5.4301 35 1 4.6857 -2.3644 1.0446 36 1 3.1967 -1.3895 1.0170 37 1 3.3852 -2.7583 -0.1051 38 1 4.8149 -2.5731 -2.0564 39 1 5.8320 -1.0737 -3.7206 40 1 6.4508 2.8137 -0.5948 41 1 5.2859 3.2195 -1.8780 42 1 4.7169 2.9443 -0.2141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823090608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:44 Heat of formation + Delta-G solvation = 8.820248 kcal Electronic energy + Delta-G solvation = -27493.773331 eV Core-core repulsion = 23635.977080 eV Total energy + Delta-G solvation = -3857.796251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29070 -40.58048 -38.41423 -36.60026 -35.88487 -34.21623 -33.36327 -32.69879 -32.11184 -28.87437 -28.28127 -27.36201 -25.70675 -25.04224 -24.12059 -22.26236 -21.38521 -20.20635 -19.69509 -18.73237 -18.17605 -17.71590 -16.73605 -16.42013 -16.07401 -15.90026 -15.62183 -14.81670 -14.55940 -14.12119 -14.08021 -13.92407 -13.40054 -13.15508 -13.02540 -12.76210 -12.46002 -12.22380 -12.18582 -12.10693 -11.82263 -11.76153 -11.57585 -11.40747 -11.15092 -11.08899 -10.96447 -10.94508 -10.73031 -10.30395 -9.76981 -9.50925 -9.38095 -9.32521 -9.11855 -8.53416 -7.93751 -6.15027 -4.20550 -0.10853 0.65654 1.08181 1.33594 2.29900 2.93530 2.99695 3.24245 3.32778 3.36160 3.64335 4.17630 4.24370 4.30622 4.36865 4.58480 4.68117 4.94247 5.05781 5.13136 5.19665 5.22692 5.26373 5.29827 5.36482 5.47140 5.52587 5.60348 5.73772 5.84273 5.88262 5.99473 6.02717 6.09033 6.10705 6.41681 6.64920 6.74658 6.89146 7.24554 7.33514 7.60428 7.79997 8.08004 8.10657 8.63851 8.85253 9.45294 10.93154 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.004851 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.029357 B = 5770.133001 C = 6972.333361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.180 4.180 3 C 0.134 3.866 4 N -0.581 5.581 5 C 0.246 3.754 6 C -0.530 4.530 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.555 3.445 15 O -0.519 6.519 16 C -0.108 4.108 17 C -0.003 4.003 18 C -0.136 4.136 19 C -0.125 4.125 20 C -0.047 4.047 21 C -0.052 4.052 22 N 0.029 4.971 23 O -0.164 6.164 24 O -0.148 6.148 25 C 0.015 3.985 26 C -0.135 4.135 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -11.504 -13.713 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.199 4.199 3 C 0.011 3.989 4 N -0.311 5.311 5 C 0.128 3.872 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.339 3.661 15 O -0.395 6.395 16 C -0.112 4.112 17 C -0.004 4.004 18 C -0.192 4.192 19 C -0.144 4.144 20 C -0.066 4.066 21 C -0.134 4.134 22 N 0.551 4.449 23 O -0.379 6.379 24 O -0.367 6.367 25 C 0.013 3.987 26 C -0.191 4.191 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.879 -11.864 -12.503 17.259 hybrid contribution 0.300 1.191 -0.277 1.259 sum 1.179 -10.673 -12.780 16.693 Atomic orbital electron populations 1.23849 0.95755 1.01936 0.99793 1.23585 0.96567 0.99164 1.00605 1.20610 0.93065 0.95851 0.89405 1.48295 1.09764 1.59027 1.13997 1.19397 0.95710 0.94040 0.78058 1.21404 1.41029 0.93034 1.01428 0.92311 1.24908 0.94846 0.98832 0.95249 1.69930 1.41751 1.36214 1.05155 0.86458 0.78020 0.84783 0.78307 1.19678 1.20892 1.20770 1.17795 0.83045 0.78941 0.86304 1.90826 1.52612 1.55803 1.40285 1.20073 1.02187 0.93448 0.95523 1.20314 0.92548 0.92760 0.94799 1.21200 1.01733 0.98611 0.97692 1.20923 1.00481 1.00436 0.92540 1.20947 0.95305 0.89947 1.00414 1.20694 1.10424 0.91298 0.90995 1.43534 0.99094 1.00613 1.01690 1.94525 1.65815 1.76928 1.00645 1.94562 1.31743 1.24551 1.85827 1.19729 0.91928 0.98060 0.89001 1.21183 1.05478 0.88674 1.03812 0.88581 0.88203 0.87139 0.88947 0.91295 0.94493 0.93621 0.92639 0.89219 0.89567 0.90099 0.83278 0.83410 0.88157 0.90567 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 29.01 0.42 -1.66 16 2 C -0.18 -2.36 9.50 -36.03 -0.34 -2.70 16 3 C 0.13 2.10 5.67 -5.19 -0.03 2.07 16 4 N -0.58 -11.34 2.44 -177.55 -0.43 -11.77 16 5 C 0.25 6.01 5.16 -5.19 -0.03 5.98 16 6 C -0.53 -14.20 9.39 -34.44 -0.32 -14.52 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 10 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.55 10.81 3.95 -12.33 -0.05 10.76 16 15 O -0.52 -12.40 16.68 5.33 0.09 -12.31 16 16 C -0.11 -1.67 3.92 -104.97 -0.41 -2.08 16 17 C 0.00 -0.04 5.73 -104.23 -0.60 -0.64 16 18 C -0.14 -1.42 8.32 36.00 0.30 -1.12 16 19 C -0.13 -1.16 9.69 -39.64 -0.38 -1.55 16 20 C -0.05 -0.49 9.65 -39.49 -0.38 -0.87 16 21 C -0.05 -0.70 6.48 -80.01 -0.52 -1.22 16 22 N 0.03 0.43 4.14 33.93 0.14 0.57 16 23 O -0.16 -2.42 18.92 -29.46 -0.56 -2.97 16 24 O -0.15 -2.33 16.75 -29.46 -0.49 -2.83 16 25 C 0.01 0.22 5.47 -104.22 -0.57 -0.35 16 26 C -0.14 -2.14 8.31 36.01 0.30 -1.84 16 27 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 28 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 29 H 0.11 1.31 4.69 -52.49 -0.25 1.06 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.07 0.99 6.54 -51.93 -0.34 0.65 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.09 5.22 -51.93 -0.27 0.82 16 37 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.15 1.21 7.99 -52.48 -0.42 0.79 16 40 H 0.10 1.57 8.13 -51.93 -0.42 1.15 16 41 H 0.08 1.12 6.92 -51.93 -0.36 0.76 16 42 H 0.09 1.64 6.88 -51.93 -0.36 1.28 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -31.54 360.00 -8.10 -39.64 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.27 Total: 0.88 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.72 Total: -8.08 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.44 Total: -35.94 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.96 Total: -18.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.54 -8.10 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.459 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds