Wall clock time and date at job start Tue Mar 31 2020 13:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00103 * 2 1 4 4 N 1.46497 * 109.46827 * 125.00289 * 3 2 1 5 5 C 1.46504 * 120.00011 * 269.99797 * 4 3 2 6 6 C 1.50702 * 109.47509 * 270.00674 * 5 4 3 7 7 H 1.08001 * 119.99620 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00594 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99764 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47241 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47079 * 120.00193 * 10 8 6 13 13 H 1.48500 * 109.46801 * 239.99889 * 10 8 6 14 14 C 1.34775 * 120.00400 * 90.00696 * 4 3 2 15 15 O 1.21546 * 120.00316 * 179.97438 * 14 4 3 16 16 C 1.47852 * 119.99588 * 359.97438 * 14 4 3 17 17 C 1.39594 * 120.14366 * 270.00846 * 16 14 4 18 18 C 1.50696 * 120.07516 * 359.97438 * 17 16 14 19 19 C 1.37934 * 119.84879 * 180.02562 * 17 16 14 20 20 C 1.38376 * 120.14938 * 359.97438 * 19 17 16 21 21 C 1.38340 * 120.29301 * 0.25123 * 20 19 17 22 22 N 1.48003 * 119.92980 * 179.72675 * 21 20 19 23 23 O 1.21803 * 120.00625 * 36.75908 * 22 21 20 24 24 O 1.21801 * 120.00115 * 216.76297 * 22 21 20 25 25 C 1.37980 * 120.14017 * 359.49451 * 21 20 19 26 26 C 1.50703 * 120.07405 * 180.27208 * 25 21 20 27 27 H 1.08001 * 119.99993 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99789 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46679 * 5.00449 * 3 2 1 31 31 H 1.08992 * 109.47405 * 245.00547 * 3 2 1 32 32 H 1.09001 * 109.46895 * 30.00742 * 5 4 3 33 33 H 1.09002 * 109.47124 * 150.00031 * 5 4 3 34 34 H 0.96995 * 120.00294 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47405 * 270.02699 * 18 17 16 36 36 H 1.09002 * 109.47407 * 30.02853 * 18 17 16 37 37 H 1.09003 * 109.47352 * 150.03018 * 18 17 16 38 38 H 1.08005 * 119.92892 * 180.02562 * 19 17 16 39 39 H 1.08003 * 119.85536 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.47331 * 275.83115 * 26 25 21 41 41 H 1.09002 * 109.46482 * 35.83049 * 26 25 21 42 42 H 1.09000 * 109.47182 * 155.82483 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3040 3.8368 1.6369 8 6 2.5194 4.0663 3.6087 9 7 1.9601 3.4655 4.6363 10 14 2.8738 5.8991 3.6779 11 1 3.5025 6.3302 2.4035 12 1 1.6037 6.6416 3.8799 13 1 3.7975 6.1824 4.8057 14 6 4.2498 0.8662 0.9823 15 8 5.0217 0.8887 1.9209 16 6 4.6885 0.3279 -0.3229 17 6 4.5273 -1.0283 -0.6119 18 6 3.9058 -1.9488 0.4066 19 6 4.9393 -1.5241 -1.8313 20 6 5.5107 -0.6803 -2.7675 21 6 5.6776 0.6638 -2.4857 22 7 6.2953 1.5578 -3.4905 23 8 6.0648 1.3939 -4.6752 24 8 7.0341 2.4576 -3.1327 25 6 5.2650 1.1735 -1.2717 26 6 5.4419 2.6392 -0.9686 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 1.4889 1.6965 2.5460 33 1 3.0991 1.3601 3.2260 34 1 1.7319 3.9740 5.4301 35 1 4.6857 -2.3644 1.0446 36 1 3.1967 -1.3895 1.0170 37 1 3.3852 -2.7583 -0.1051 38 1 4.8149 -2.5731 -2.0564 39 1 5.8320 -1.0737 -3.7206 40 1 6.4508 2.8137 -0.5948 41 1 5.2859 3.2195 -1.8780 42 1 4.7169 2.9443 -0.2141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823090608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:43 Heat of formation + Delta-G solvation = -8.478264 kcal Electronic energy + Delta-G solvation = -27494.523451 eV Core-core repulsion = 23635.977080 eV Total energy + Delta-G solvation = -3858.546371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40138 -41.82885 -39.74170 -37.73997 -37.37625 -35.33048 -35.07056 -33.84079 -33.60526 -30.04889 -29.72055 -28.76214 -27.06620 -26.07957 -25.72293 -23.75783 -22.41860 -21.37515 -20.84382 -19.84081 -19.48965 -18.87244 -18.67076 -17.85323 -17.50956 -17.21027 -16.50598 -16.39242 -16.01030 -15.45996 -15.26973 -14.91476 -14.56855 -14.49882 -14.27365 -14.17684 -14.00547 -13.43541 -13.39800 -13.23048 -13.13214 -13.01679 -12.90318 -12.83445 -12.73021 -12.65409 -12.30610 -12.27953 -12.13726 -12.09859 -11.69537 -11.01289 -10.68758 -10.44651 -10.35478 -10.18846 -9.63328 -8.27363 -6.41035 -1.17596 -0.34426 0.02580 0.26288 1.25461 1.33214 1.35707 1.45391 1.51659 1.97289 2.22931 2.36957 3.03372 3.14003 3.16468 3.38268 3.52359 3.73138 3.94564 3.98689 4.10015 4.13192 4.23227 4.28278 4.29234 4.46373 4.59192 4.64082 4.71913 4.72901 4.78249 4.92796 4.96244 5.01809 5.08697 5.14491 5.17510 5.40401 5.41941 5.65052 5.69986 5.87419 5.99396 6.43862 6.49538 6.66907 7.10647 7.31269 8.80266 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.004851 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.029357 B = 5770.133001 C = 6972.333361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.196 4.196 3 C 0.134 3.866 4 N -0.582 5.582 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.960 3.040 11 H -0.270 1.270 12 H -0.269 1.269 13 H -0.281 1.281 14 C 0.559 3.441 15 O -0.578 6.578 16 C -0.128 4.128 17 C 0.002 3.998 18 C -0.138 4.138 19 C -0.097 4.097 20 C -0.030 4.030 21 C -0.061 4.061 22 N 0.031 4.969 23 O -0.141 6.141 24 O -0.193 6.193 25 C -0.002 4.002 26 C -0.128 4.128 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.004 0.996 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.205 0.795 39 H 0.184 0.816 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -14.098 -16.515 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.215 4.215 3 C 0.011 3.989 4 N -0.310 5.310 5 C 0.144 3.856 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.194 1.194 13 H -0.207 1.207 14 C 0.346 3.654 15 O -0.459 6.459 16 C -0.132 4.132 17 C 0.001 3.999 18 C -0.194 4.194 19 C -0.115 4.115 20 C -0.049 4.049 21 C -0.144 4.144 22 N 0.550 4.450 23 O -0.365 6.365 24 O -0.401 6.401 25 C -0.004 4.004 26 C -0.185 4.185 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.222 0.778 39 H 0.201 0.799 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.229 -14.406 -15.289 21.009 hybrid contribution 0.427 1.871 0.513 1.987 sum 0.656 -12.535 -14.776 19.388 Atomic orbital electron populations 1.24099 0.95355 1.03129 0.97284 1.23495 0.96963 0.98228 1.02776 1.20757 0.92449 0.97385 0.88263 1.48186 1.10919 1.58548 1.13385 1.18805 0.94366 0.92733 0.79665 1.21672 1.40820 0.94342 1.01390 0.93017 1.25728 0.94594 1.03251 0.94877 1.70029 1.42588 1.37928 1.05708 0.85483 0.78296 0.79622 0.78156 1.19412 1.19360 1.20685 1.18351 0.82038 0.77612 0.87409 1.90774 1.54023 1.58177 1.42885 1.19670 1.04763 0.95322 0.93488 1.20617 0.91884 0.91044 0.96350 1.21296 1.01454 0.99160 0.97489 1.21466 0.97402 1.02514 0.90116 1.21490 0.93330 0.88159 1.01900 1.20800 1.11135 0.92343 0.90110 1.43722 0.98843 1.00575 1.01863 1.94490 1.64756 1.76232 1.01008 1.94584 1.33600 1.25980 1.85975 1.19527 0.93559 0.97153 0.90138 1.21015 1.03985 0.90468 1.03009 0.85716 0.88665 0.85343 0.90215 0.90063 0.95326 0.97756 0.92313 0.89090 0.92363 0.85481 0.77836 0.79923 0.89135 0.90004 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 14.32 67.78 0.97 -2.51 16 2 C -0.20 -4.88 9.50 25.65 0.24 -4.64 16 3 C 0.13 4.26 5.67 85.63 0.49 4.75 16 4 N -0.58 -24.00 2.44 -833.92 -2.03 -26.04 16 5 C 0.26 13.81 5.16 85.63 0.44 14.25 16 6 C -0.54 -30.69 9.39 25.60 0.24 -30.45 16 7 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 8 C 0.02 0.86 5.46 84.65 0.46 1.32 16 9 N -0.92 -54.54 13.29 21.44 0.28 -54.26 16 10 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 C 0.56 22.96 3.95 86.79 0.34 23.30 16 15 O -0.58 -29.73 16.68 -3.86 -0.06 -29.79 16 16 C -0.13 -3.93 3.92 -20.09 -0.08 -4.01 16 17 C 0.00 0.04 5.73 -19.61 -0.11 -0.07 16 18 C -0.14 -2.46 8.32 71.23 0.59 -1.86 16 19 C -0.10 -1.24 9.69 22.23 0.22 -1.02 16 20 C -0.03 -0.48 9.65 22.33 0.22 -0.27 16 21 C -0.06 -1.54 6.48 36.34 0.24 -1.31 16 22 N 0.03 0.87 4.14 -46.56 -0.19 0.68 16 23 O -0.14 -3.81 18.92 18.88 0.36 -3.45 16 24 O -0.19 -6.18 16.75 18.89 0.32 -5.86 16 25 C 0.00 -0.06 5.47 -19.61 -0.11 -0.16 16 26 C -0.13 -4.35 8.31 71.24 0.59 -3.76 16 27 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 29 H 0.13 2.72 4.69 -2.91 -0.01 2.71 16 30 H 0.08 2.69 7.72 -2.39 -0.02 2.67 16 31 H 0.08 2.36 6.54 -2.39 -0.02 2.35 16 32 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.00 0.26 7.42 -2.39 -0.02 0.24 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.41 5.22 -2.39 -0.01 1.40 16 37 H 0.13 1.07 8.09 -2.39 -0.02 1.05 16 38 H 0.20 0.53 8.06 -2.91 -0.02 0.50 16 39 H 0.18 1.76 7.99 -2.91 -0.02 1.74 16 40 H 0.09 3.13 8.13 -2.39 -0.02 3.11 16 41 H 0.08 2.57 6.92 -2.39 -0.02 2.56 16 42 H 0.06 2.42 6.88 -2.39 -0.02 2.41 16 Total: -1.00 -75.08 360.00 6.48 -68.60 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.05 Total: 9.89 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 4.74 Total: -6.44 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -1.94 Total: -79.62 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: 0.61 Total: -39.10 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.08 6.48 -68.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.121 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds