Wall clock time and date at job start Tue Mar 31 2020 12:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86789 * 120.00388 * 2 1 4 4 H 1.48504 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47342 * 299.99868 * 3 2 1 6 6 H 1.48500 * 109.47091 * 59.99594 * 3 2 1 7 7 C 1.37881 * 119.99386 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00514 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.64292 * 300.70272 * 9 7 2 11 11 C 1.55152 * 110.72099 * 177.55670 * 9 7 2 12 12 C 1.54908 * 101.58365 * 205.95733 * 11 9 7 13 13 N 1.47429 * 104.83070 * 37.01097 * 12 11 9 14 14 C 1.34781 * 125.64575 * 155.90817 * 13 12 11 15 15 O 1.21589 * 119.99345 * 175.78157 * 14 13 12 16 16 C 1.47519 * 120.00301 * 355.78020 * 14 13 12 17 17 C 1.39986 * 120.59527 * 35.68543 * 16 14 13 18 18 C 1.38334 * 118.34867 * 180.02562 * 17 16 14 19 19 C 1.38354 * 119.45982 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.40736 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.50148 * 343.74431 * 20 19 18 22 22 C 1.52998 * 117.49894 * 275.08540 * 20 19 18 23 23 N 1.31877 * 121.18399 * 0.02562 * 19 18 17 24 24 C 1.32238 * 121.79974 * 359.65341 * 23 19 18 25 25 O 1.35431 * 119.80110 * 180.33579 * 24 23 19 26 26 C 1.47018 * 108.70115 * 335.86912 * 13 12 11 27 27 H 0.97006 * 119.99946 * 0.02562 * 1 2 3 28 28 H 0.96701 * 113.99913 * 56.85414 * 10 9 7 29 29 H 1.08999 * 111.00747 * 324.03156 * 11 9 7 30 30 H 1.09000 * 111.00612 * 87.84952 * 11 9 7 31 31 H 1.09001 * 110.36878 * 155.85218 * 12 11 9 32 32 H 1.09000 * 110.36971 * 278.17123 * 12 11 9 33 33 H 1.08002 * 120.82845 * 0.02562 * 17 16 14 34 34 H 1.08007 * 120.27280 * 179.97438 * 18 17 16 35 35 H 1.09004 * 115.55120 * 129.42302 * 20 19 18 36 36 H 1.08999 * 117.49507 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49845 * 145.01855 * 21 20 19 38 38 H 1.08998 * 117.50175 * 214.98314 * 22 20 19 39 39 H 1.09001 * 117.49914 * 359.97438 * 22 20 19 40 40 H 0.96705 * 113.99927 * 270.29550 * 25 24 23 41 41 H 1.08995 * 109.88186 * 241.64052 * 26 13 12 42 42 H 1.09002 * 109.87623 * 120.47797 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4073 -2.5938 1.1500 11 6 2.2320 -3.6996 -0.0607 12 6 1.3486 -4.7902 -0.7162 13 7 0.5282 -4.0673 -1.7051 14 6 -0.0370 -4.6082 -2.8026 15 8 -0.7590 -3.9326 -3.5102 16 6 0.2202 -6.0198 -3.1453 17 6 0.3603 -6.9831 -2.1393 18 6 0.6012 -8.2930 -2.5131 19 6 0.6954 -8.6109 -3.8563 20 6 0.9573 -10.0384 -4.2623 21 6 1.4798 -10.9940 -3.1877 22 6 2.4134 -10.5068 -4.2986 23 7 0.5602 -7.6872 -4.7878 24 6 0.3228 -6.4220 -4.4852 25 8 0.1842 -5.5079 -5.4748 26 6 0.4280 -2.6590 -1.2952 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2249 -1.8670 1.2348 29 1 3.0946 -3.4678 -0.6855 30 1 2.5458 -3.9991 0.9393 31 1 1.9710 -5.5354 -1.2117 32 1 0.7122 -5.2631 0.0317 33 1 0.2822 -6.7105 -1.0972 34 1 0.7148 -9.0613 -1.7626 35 1 0.2787 -10.4462 -5.0115 36 1 1.6338 -10.5902 -2.1870 37 1 1.1452 -12.0305 -3.2301 38 1 2.6926 -11.2229 -5.0714 39 1 3.1820 -9.7823 -4.0293 40 1 1.0136 -5.0883 -5.7417 41 1 -0.6141 -2.4010 -1.1068 42 1 0.8360 -2.0161 -2.0751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823527501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:42 Heat of formation + Delta-G solvation = -50.861329 kcal Electronic energy + Delta-G solvation = -26796.405930 eV Core-core repulsion = 22936.021692 eV Total energy + Delta-G solvation = -3860.384238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98058 -39.23858 -38.02209 -37.03915 -36.39233 -34.44561 -32.75791 -32.25079 -30.53932 -29.86421 -27.94678 -25.95013 -24.77390 -23.63507 -22.81072 -22.46311 -21.23399 -19.92473 -19.40512 -18.36857 -17.33624 -17.14402 -16.89605 -16.42709 -15.67587 -15.27895 -15.12848 -14.87427 -14.75412 -14.29345 -13.83979 -13.40422 -13.18110 -13.03910 -12.97062 -12.85233 -12.30117 -12.06438 -11.82662 -11.70899 -11.68257 -11.55415 -11.12005 -10.95541 -10.86256 -10.78948 -10.74874 -10.52863 -10.26405 -9.95273 -9.83626 -9.38501 -9.33078 -8.85678 -8.73327 -8.38451 -7.97585 -6.34574 -4.43767 0.57855 1.00131 2.95525 3.16008 3.19751 3.25888 3.28737 3.39422 3.55990 3.80385 4.16017 4.22368 4.47650 4.53667 4.63832 4.75018 4.82551 4.89733 4.93877 5.22069 5.26912 5.29926 5.37590 5.47107 5.58827 5.65078 5.72532 5.74250 5.84957 5.87549 5.91294 6.07865 6.27427 6.40602 6.66376 6.76322 6.88185 7.19468 7.30264 7.47031 7.67552 7.75110 7.92576 8.08592 8.57835 8.63527 9.24437 9.33883 10.73060 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.003194 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.632488 B = 8762.985759 C = 9275.427827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.118 4.118 12 C 0.096 3.904 13 N -0.604 5.604 14 C 0.563 3.437 15 O -0.525 6.525 16 C -0.189 4.189 17 C -0.032 4.032 18 C -0.188 4.188 19 C 0.195 3.805 20 C -0.111 4.111 21 C -0.171 4.171 22 C -0.160 4.160 23 N -0.502 5.502 24 C 0.365 3.635 25 O -0.461 6.461 26 C 0.104 3.896 27 H 0.271 0.729 28 H 0.386 0.614 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 -18.679 -3.866 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.027 4.027 13 N -0.338 5.338 14 C 0.350 3.650 15 O -0.402 6.402 16 C -0.196 4.196 17 C -0.058 4.058 18 C -0.208 4.208 19 C 0.057 3.943 20 C -0.130 4.130 21 C -0.209 4.209 22 C -0.198 4.198 23 N -0.221 5.221 24 C 0.185 3.815 25 O -0.267 6.267 26 C -0.017 4.017 27 H 0.081 0.919 28 H 0.237 0.763 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.260 0.740 41 H 0.086 0.914 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.913 -19.022 -5.083 20.074 hybrid contribution 0.359 1.874 0.590 1.997 sum 4.273 -17.148 -4.493 18.235 Atomic orbital electron populations 1.69646 1.06005 1.27970 1.49645 1.25089 0.95068 0.99859 0.93315 0.86336 0.80027 0.82660 0.77822 1.19577 1.20735 1.20691 1.21538 0.93739 0.90024 1.52407 0.91421 1.19483 0.86100 0.92150 0.81453 1.86075 1.53616 1.52812 1.47053 1.22776 0.97556 0.94942 1.00340 1.22554 0.93423 0.95790 0.90930 1.48714 1.49857 1.12713 1.22471 1.17476 0.81086 0.85578 0.80855 1.90822 1.36839 1.62095 1.50470 1.21218 1.08050 0.96128 0.94176 1.22042 0.91642 0.91843 1.00258 1.21876 1.04747 0.97121 0.97059 1.20189 0.92599 0.92978 0.88546 1.20821 0.99108 0.89669 1.03428 1.23139 1.03403 0.99268 0.95047 1.22992 0.92102 1.03181 1.01485 1.66924 1.15156 1.01155 1.38883 1.19030 0.91093 0.86170 0.85177 1.84793 1.35428 1.53010 1.53513 1.23064 1.01992 0.77439 0.99245 0.91911 0.76313 0.90446 0.90349 0.91848 0.91446 0.83096 0.83767 0.85814 0.87994 0.87870 0.88029 0.88503 0.73992 0.91424 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.35 10.97 55.43 0.61 -22.74 16 2 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.64 8.12 -34.44 -0.28 -13.92 16 8 H 0.07 1.69 7.77 -52.48 -0.41 1.28 16 9 C 0.25 5.78 0.86 -89.94 -0.08 5.70 16 10 O -0.59 -14.24 13.09 -35.23 -0.46 -14.70 16 11 C -0.12 -2.22 6.22 -24.59 -0.15 -2.37 16 12 C 0.10 1.58 5.13 -2.53 -0.01 1.56 16 13 N -0.60 -12.05 3.33 -171.75 -0.57 -12.62 16 14 C 0.56 11.32 7.41 -12.48 -0.09 11.23 16 15 O -0.52 -12.56 16.31 -12.17 -0.20 -12.76 16 16 C -0.19 -3.08 5.55 -104.69 -0.58 -3.66 16 17 C -0.03 -0.41 8.02 -38.89 -0.31 -0.72 16 18 C -0.19 -2.01 9.34 -39.50 -0.37 -2.38 16 19 C 0.20 2.31 6.46 -82.53 -0.53 1.78 16 20 C -0.11 -0.98 6.21 -91.77 -0.57 -1.55 16 21 C -0.17 -1.05 9.79 -26.70 -0.26 -1.32 16 22 C -0.16 -1.13 10.24 -26.70 -0.27 -1.41 16 23 N -0.50 -7.34 10.28 -9.21 -0.09 -7.43 16 24 C 0.37 5.86 7.74 -16.61 -0.13 5.73 16 25 O -0.46 -7.41 12.22 -35.44 -0.43 -7.85 16 26 C 0.10 2.44 5.40 -3.07 -0.02 2.43 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.39 9.72 7.17 45.56 0.33 10.05 16 29 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 32 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 33 H 0.15 1.75 5.51 -52.49 -0.29 1.46 16 34 H 0.14 1.07 6.22 -52.48 -0.33 0.75 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.56 6.37 -51.93 -0.33 0.23 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 4.55 9.06 45.56 0.41 4.97 16 41 H 0.07 1.76 8.01 -51.93 -0.42 1.34 16 42 H 0.07 1.73 7.82 -51.93 -0.41 1.33 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -31.63 347.63 -8.51 -40.14 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -3.82 Total: 14.90 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -3.75 Total: 2.80 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.06 Total: -42.79 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.09 Total: -35.30 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.63 -8.51 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.726 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds