Wall clock time and date at job start Tue Mar 31 2020 12:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86789 * 120.00388 * 2 1 4 4 H 1.48504 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47342 * 299.99868 * 3 2 1 6 6 H 1.48500 * 109.47091 * 59.99594 * 3 2 1 7 7 C 1.37881 * 119.99386 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00514 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.64292 * 300.70272 * 9 7 2 11 11 C 1.55152 * 110.72099 * 177.55670 * 9 7 2 12 12 C 1.54908 * 101.58365 * 205.95733 * 11 9 7 13 13 N 1.47429 * 104.83070 * 37.01097 * 12 11 9 14 14 C 1.34781 * 125.64575 * 155.90817 * 13 12 11 15 15 O 1.21589 * 119.99345 * 175.78157 * 14 13 12 16 16 C 1.47519 * 120.00301 * 355.78020 * 14 13 12 17 17 C 1.39986 * 120.59527 * 35.68543 * 16 14 13 18 18 C 1.38334 * 118.34867 * 180.02562 * 17 16 14 19 19 C 1.38354 * 119.45982 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.40736 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.50148 * 343.74431 * 20 19 18 22 22 C 1.52998 * 117.49894 * 275.08540 * 20 19 18 23 23 N 1.31877 * 121.18399 * 0.02562 * 19 18 17 24 24 C 1.32238 * 121.79974 * 359.65341 * 23 19 18 25 25 O 1.35431 * 119.80110 * 180.33579 * 24 23 19 26 26 C 1.47018 * 108.70115 * 335.86912 * 13 12 11 27 27 H 0.97006 * 119.99946 * 0.02562 * 1 2 3 28 28 H 0.96701 * 113.99913 * 56.85414 * 10 9 7 29 29 H 1.08999 * 111.00747 * 324.03156 * 11 9 7 30 30 H 1.09000 * 111.00612 * 87.84952 * 11 9 7 31 31 H 1.09001 * 110.36878 * 155.85218 * 12 11 9 32 32 H 1.09000 * 110.36971 * 278.17123 * 12 11 9 33 33 H 1.08002 * 120.82845 * 0.02562 * 17 16 14 34 34 H 1.08007 * 120.27280 * 179.97438 * 18 17 16 35 35 H 1.09004 * 115.55120 * 129.42302 * 20 19 18 36 36 H 1.08999 * 117.49507 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49845 * 145.01855 * 21 20 19 38 38 H 1.08998 * 117.50175 * 214.98314 * 22 20 19 39 39 H 1.09001 * 117.49914 * 359.97438 * 22 20 19 40 40 H 0.96705 * 113.99927 * 270.29550 * 25 24 23 41 41 H 1.08995 * 109.88186 * 241.64052 * 26 13 12 42 42 H 1.09002 * 109.87623 * 120.47797 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4073 -2.5938 1.1500 11 6 2.2320 -3.6996 -0.0607 12 6 1.3486 -4.7902 -0.7162 13 7 0.5282 -4.0673 -1.7051 14 6 -0.0370 -4.6082 -2.8026 15 8 -0.7590 -3.9326 -3.5102 16 6 0.2202 -6.0198 -3.1453 17 6 0.3603 -6.9831 -2.1393 18 6 0.6012 -8.2930 -2.5131 19 6 0.6954 -8.6109 -3.8563 20 6 0.9573 -10.0384 -4.2623 21 6 1.4798 -10.9940 -3.1877 22 6 2.4134 -10.5068 -4.2986 23 7 0.5602 -7.6872 -4.7878 24 6 0.3228 -6.4220 -4.4852 25 8 0.1842 -5.5079 -5.4748 26 6 0.4280 -2.6590 -1.2952 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2249 -1.8670 1.2348 29 1 3.0946 -3.4678 -0.6855 30 1 2.5458 -3.9991 0.9393 31 1 1.9710 -5.5354 -1.2117 32 1 0.7122 -5.2631 0.0317 33 1 0.2822 -6.7105 -1.0972 34 1 0.7148 -9.0613 -1.7626 35 1 0.2787 -10.4462 -5.0115 36 1 1.6338 -10.5902 -2.1870 37 1 1.1452 -12.0305 -3.2301 38 1 2.6926 -11.2229 -5.0714 39 1 3.1820 -9.7823 -4.0293 40 1 1.0136 -5.0883 -5.7417 41 1 -0.6141 -2.4010 -1.1068 42 1 0.8360 -2.0161 -2.0751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823527501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:42 Heat of formation + Delta-G solvation = -75.995085 kcal Electronic energy + Delta-G solvation = -26797.495812 eV Core-core repulsion = 22936.021692 eV Total energy + Delta-G solvation = -3861.474120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12269 -40.69364 -39.16630 -38.55761 -37.27457 -36.16698 -34.21326 -33.90460 -31.90377 -31.15662 -29.64440 -27.46622 -26.16658 -24.62173 -24.23098 -23.03964 -22.12278 -21.54926 -20.95344 -19.47903 -19.17310 -18.39799 -18.10180 -17.44927 -17.35542 -16.67715 -16.48293 -16.14751 -16.01220 -15.69404 -14.98968 -14.81229 -14.75309 -14.59046 -14.31603 -14.09917 -13.58380 -13.47919 -13.33804 -12.99348 -12.89426 -12.87450 -12.50875 -12.33933 -12.27255 -12.23648 -12.14162 -11.64400 -11.34213 -11.25793 -11.18425 -10.94817 -10.69214 -10.54439 -10.28310 -9.92888 -9.59964 -8.28967 -6.44980 -0.50283 0.00169 1.38928 1.42825 1.53043 1.59914 1.90494 2.32205 2.37104 2.46388 2.97837 3.03007 3.23043 3.46932 3.64597 3.76573 3.86290 3.95035 4.03097 4.08403 4.18497 4.20388 4.30380 4.39055 4.51363 4.54165 4.65749 4.79022 4.79554 4.90447 4.97984 5.08425 5.10421 5.19933 5.21974 5.30247 5.34786 5.38585 5.48290 5.72947 6.01636 6.42276 6.52373 6.63839 6.74777 7.04035 7.26560 7.34147 8.77046 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.003194 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.632488 B = 8762.985759 C = 9275.427827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.112 4.112 12 C 0.100 3.900 13 N -0.606 5.606 14 C 0.563 3.437 15 O -0.578 6.578 16 C -0.213 4.213 17 C -0.025 4.025 18 C -0.171 4.171 19 C 0.197 3.803 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.160 4.160 23 N -0.521 5.521 24 C 0.352 3.648 25 O -0.483 6.483 26 C 0.121 3.879 27 H 0.270 0.730 28 H 0.377 0.623 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.415 0.585 41 H 0.030 0.970 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -22.029 -2.659 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.194 3.806 10 O -0.395 6.395 11 C -0.150 4.150 12 C -0.021 4.021 13 N -0.338 5.338 14 C 0.352 3.648 15 O -0.459 6.459 16 C -0.220 4.220 17 C -0.051 4.051 18 C -0.190 4.190 19 C 0.059 3.941 20 C -0.155 4.155 21 C -0.184 4.184 22 C -0.197 4.197 23 N -0.240 5.240 24 C 0.173 3.827 25 O -0.293 6.293 26 C -0.003 4.003 27 H 0.080 0.920 28 H 0.227 0.773 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.275 0.725 41 H 0.049 0.951 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.790 -22.410 -3.857 23.465 hybrid contribution -0.199 2.796 0.166 2.808 sum 5.590 -19.614 -3.691 20.726 Atomic orbital electron populations 1.69755 1.07133 1.28460 1.50285 1.25827 0.95784 1.02877 0.93138 0.85423 0.79216 0.79025 0.77479 1.18726 1.21210 1.20290 1.21883 0.94029 0.91280 1.52219 0.91276 1.19692 0.86610 0.93696 0.80617 1.86061 1.53570 1.52357 1.47534 1.22775 0.96941 0.93450 1.01835 1.22770 0.93300 0.95441 0.90599 1.48717 1.50340 1.11485 1.23301 1.18098 0.79815 0.87011 0.79855 1.90778 1.39146 1.63927 1.52055 1.20899 1.11607 0.94159 0.95291 1.22246 0.90700 0.91989 1.00122 1.22281 1.02347 0.96933 0.97415 1.20893 0.90470 0.93808 0.88955 1.20906 1.00548 0.88338 1.05728 1.23312 1.00844 0.99493 0.94792 1.23085 0.90849 1.03173 1.02600 1.67012 1.16100 1.00810 1.40080 1.19155 0.91844 0.86719 0.85012 1.84735 1.36976 1.53628 1.53922 1.22578 0.99471 0.79471 0.98738 0.92046 0.77269 0.89855 0.88555 0.87945 0.89640 0.81425 0.79473 0.85896 0.86637 0.85980 0.86851 0.89000 0.72452 0.95129 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.61 10.97 21.45 0.24 -49.37 16 2 C 0.02 1.27 5.26 84.66 0.45 1.71 16 3 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.56 -28.47 8.12 25.60 0.21 -28.27 16 8 H 0.07 3.43 7.77 -2.91 -0.02 3.41 16 9 C 0.23 10.99 0.86 -10.35 -0.01 10.98 16 10 O -0.59 -28.78 13.09 -148.98 -1.95 -30.73 16 11 C -0.11 -4.00 6.22 31.98 0.20 -3.80 16 12 C 0.10 3.05 5.13 86.85 0.45 3.49 16 13 N -0.61 -24.38 3.33 -815.56 -2.71 -27.10 16 14 C 0.56 23.22 7.41 86.69 0.64 23.86 16 15 O -0.58 -29.32 16.31 12.70 0.21 -29.11 16 16 C -0.21 -6.80 5.55 -19.91 -0.11 -6.91 16 17 C -0.03 -0.57 8.02 22.72 0.18 -0.39 16 18 C -0.17 -2.92 9.34 22.32 0.21 -2.71 16 19 C 0.20 4.11 6.46 42.58 0.28 4.39 16 20 C -0.14 -1.94 6.21 -11.54 -0.07 -2.01 16 21 C -0.15 -1.08 9.79 30.62 0.30 -0.78 16 22 C -0.16 -1.68 10.24 30.62 0.31 -1.37 16 23 N -0.52 -14.69 10.28 -296.06 -3.04 -17.74 16 24 C 0.35 11.33 7.74 85.13 0.66 11.99 16 25 O -0.48 -16.30 12.22 -70.57 -0.86 -17.16 16 26 C 0.12 5.93 5.40 86.73 0.47 6.40 16 27 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 28 H 0.38 19.67 7.17 -74.06 -0.53 19.14 16 29 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 30 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.10 2.37 6.57 -2.39 -0.02 2.35 16 32 H 0.09 2.34 7.27 -2.39 -0.02 2.32 16 33 H 0.17 3.19 5.51 -2.91 -0.02 3.17 16 34 H 0.19 1.58 6.22 -2.91 -0.02 1.56 16 35 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.12 0.55 6.37 -2.39 -0.02 0.54 16 37 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.41 10.16 9.06 -74.05 -0.67 9.49 16 41 H 0.03 1.69 8.01 -2.39 -0.02 1.67 16 42 H 0.03 1.88 7.82 -2.39 -0.02 1.87 16 Total: -1.00 -73.04 347.63 -2.06 -75.10 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.11 Total: 35.88 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 4.16 Total: 16.59 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -5.52 Total: -94.21 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -2.61 Total: -77.00 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -73.04 -2.06 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.896 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds