Wall clock time and date at job start Tue Mar 31 2020 12:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00132 * 2 1 4 4 H 1.48494 * 109.46980 * 270.00291 * 3 2 1 5 5 H 1.48505 * 109.46897 * 29.99760 * 3 2 1 6 6 H 1.48499 * 109.47368 * 149.99834 * 3 2 1 7 7 C 1.37881 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00159 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99861 * 269.99533 * 10 9 7 12 12 C 1.52996 * 109.47371 * 269.99910 * 11 10 9 13 13 C 1.53005 * 117.50028 * 243.74756 * 12 11 10 14 14 C 1.52999 * 117.49913 * 175.08830 * 12 11 10 15 15 C 1.34778 * 119.99616 * 89.99895 * 10 9 7 16 16 O 1.21705 * 120.00300 * 359.97438 * 15 10 9 17 17 C 1.46378 * 119.99504 * 179.97438 * 15 10 9 18 18 C 1.35250 * 119.99542 * 186.47173 * 17 15 10 19 19 C 1.46326 * 120.00437 * 9.05291 * 18 17 15 20 20 C 1.38077 * 125.82836 * 217.61239 * 19 18 17 21 21 C 1.39804 * 106.84216 * 179.88160 * 20 19 18 22 22 C 1.37723 * 106.89443 * 0.37812 * 21 20 19 23 23 C 1.47008 * 125.76961 * 179.78464 * 22 21 20 24 24 N 1.34777 * 119.99617 * 179.97438 * 23 22 21 25 25 O 1.21646 * 119.99947 * 0.02562 * 23 22 21 26 26 O 1.34577 * 125.82121 * 37.92324 * 19 18 17 27 27 H 0.96998 * 120.00203 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47418 * 59.99809 * 9 7 2 29 29 H 1.09000 * 109.47037 * 299.99509 * 9 7 2 30 30 H 1.09005 * 109.47300 * 30.00607 * 11 10 9 31 31 H 1.09001 * 109.46684 * 149.99930 * 11 10 9 32 32 H 1.08992 * 115.54872 * 29.42484 * 12 11 10 33 33 H 1.09000 * 117.49601 * 0.02562 * 13 12 11 34 34 H 1.08993 * 117.49224 * 145.01887 * 13 12 11 35 35 H 1.09004 * 117.50123 * 214.98344 * 14 12 11 36 36 H 1.09006 * 117.50043 * 0.02562 * 14 12 11 37 37 H 1.08003 * 119.99947 * 6.20022 * 17 15 10 38 38 H 1.08001 * 119.99564 * 189.05689 * 18 17 15 39 39 H 1.08005 * 126.57898 * 0.02562 * 20 19 18 40 40 H 1.08001 * 126.55200 * 180.13548 * 21 20 19 41 41 H 0.96994 * 120.00232 * 0.02562 * 24 23 22 42 42 H 0.97001 * 119.99418 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.3396 -6.7093 -1.7953 14 6 2.0099 -5.9382 -3.0758 15 6 2.6410 -4.1249 1.1678 16 8 2.2459 -3.6620 2.2218 17 6 3.5918 -5.2378 1.1678 18 6 3.9308 -5.8375 2.3317 19 6 3.2061 -5.5123 3.5606 20 6 3.7609 -5.3982 4.8199 21 6 2.7186 -5.0751 5.6939 22 6 1.5683 -5.0127 4.9392 23 6 0.2230 -4.7064 5.4469 24 7 -0.8256 -4.6755 4.6008 25 8 0.0566 -4.4800 6.6304 26 8 1.8842 -5.2792 3.6572 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5572 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.6868 -3.3879 -2.0279 31 1 3.6885 -4.5595 -1.1378 32 1 0.7111 -5.2089 -1.3876 33 1 3.3915 -6.8301 -1.5365 34 1 1.6912 -7.5442 -1.5296 35 1 1.1448 -6.2661 -3.6522 36 1 2.8454 -5.5519 -3.6598 37 1 4.0191 -5.5829 0.2379 38 1 4.7365 -6.5564 2.3540 39 1 4.8009 -5.5306 5.0795 40 1 2.7994 -4.9103 6.7582 41 1 -0.6928 -4.8557 3.6570 42 1 -1.7131 -4.4730 4.9357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826096956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:02 Heat of formation + Delta-G solvation = -7.571511 kcal Electronic energy + Delta-G solvation = -26882.938571 eV Core-core repulsion = 23024.431521 eV Total energy + Delta-G solvation = -3858.507051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18976 -39.31069 -38.89762 -37.25595 -34.64107 -33.82381 -33.34892 -32.60805 -32.50591 -29.10115 -27.86561 -26.31738 -24.55069 -23.00414 -22.35195 -21.53709 -21.19066 -20.67425 -19.91866 -18.46473 -17.89586 -17.15977 -16.71857 -16.49290 -15.94682 -15.68634 -15.13261 -14.69113 -14.53963 -14.29277 -14.17455 -13.80562 -13.75351 -13.39800 -12.89361 -12.81563 -12.66371 -12.40534 -12.27559 -11.84433 -11.50266 -11.44455 -11.24451 -10.93188 -10.64949 -10.39568 -10.31078 -10.17479 -9.96512 -9.87935 -9.66996 -9.63444 -9.59346 -9.04595 -8.46754 -7.91833 -7.68059 -6.08083 -4.12592 0.72903 1.71735 2.73441 2.96354 3.27629 3.35085 3.38987 3.41075 3.71461 3.75944 3.89016 3.97789 4.42350 4.64981 4.81315 4.92115 4.97373 5.10090 5.12057 5.21333 5.26812 5.30870 5.49640 5.62993 5.76932 5.79937 5.85034 5.92748 5.96050 6.02621 6.09147 6.11758 6.25526 6.39726 6.59736 6.78765 7.02359 7.12316 7.37873 7.48404 7.51064 7.88222 8.18836 8.27887 8.34077 8.85390 9.02724 9.52732 10.99836 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.005312 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.447780 B = 5270.240759 C = 7192.159935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.248 3.752 10 N -0.585 5.585 11 C 0.140 3.860 12 C -0.164 4.164 13 C -0.183 4.183 14 C -0.177 4.177 15 C 0.524 3.476 16 O -0.521 6.521 17 C -0.164 4.164 18 C -0.042 4.042 19 C 0.067 3.933 20 C -0.211 4.211 21 C -0.127 4.127 22 C -0.075 4.075 23 C 0.614 3.386 24 N -0.839 5.839 25 O -0.537 6.537 26 O -0.114 6.114 27 H 0.263 0.737 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.410 0.590 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 -16.196 -0.811 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.129 3.871 10 N -0.315 5.315 11 C 0.016 3.984 12 C -0.183 4.183 13 C -0.220 4.220 14 C -0.215 4.215 15 C 0.312 3.688 16 O -0.399 6.399 17 C -0.185 4.185 18 C -0.061 4.061 19 C 0.013 3.987 20 C -0.230 4.230 21 C -0.147 4.147 22 C -0.129 4.129 23 C 0.400 3.600 24 N -0.401 5.401 25 O -0.416 6.416 26 O -0.007 6.007 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.240 0.760 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.141 -15.659 0.256 16.484 hybrid contribution 0.341 1.083 -0.552 1.263 sum 5.482 -14.577 -0.296 15.576 Atomic orbital electron populations 1.69918 1.05964 1.27023 1.50392 1.24912 0.94867 0.99171 0.95023 0.86524 0.79930 0.83169 0.77987 1.20616 1.21074 1.19910 1.21410 0.93311 0.90630 1.51127 0.92526 1.19276 0.87405 0.82051 0.98358 1.48112 1.45115 1.34453 1.03810 1.21068 0.95119 0.94769 0.87464 1.22930 1.01464 0.93819 1.00128 1.23033 1.01349 0.95302 1.02349 1.22919 1.03394 1.04394 0.90746 1.18192 0.82241 0.83749 0.84594 1.90835 1.57404 1.61462 1.30233 1.23734 0.99681 0.96687 0.98383 1.21458 0.97316 0.99081 0.88291 1.20965 0.81681 1.01195 0.94877 1.21978 1.00311 1.09351 0.91329 1.21888 0.90561 1.01570 1.00729 1.22170 0.95772 1.12339 0.82580 1.16603 0.82118 0.76018 0.85269 1.43664 1.10428 1.73274 1.12733 1.90861 1.84202 1.50938 1.15558 1.84251 1.24713 1.64843 1.26896 0.92725 0.94991 0.93859 0.89416 0.91347 0.87433 0.89015 0.89173 0.88999 0.88740 0.84496 0.82662 0.82833 0.82680 0.76030 0.76278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.25 6.19 5.16 -5.19 -0.03 6.16 16 10 N -0.58 -11.56 2.46 -176.72 -0.43 -12.00 16 11 C 0.14 2.10 5.44 -4.05 -0.02 2.08 16 12 C -0.16 -2.10 6.01 -90.62 -0.54 -2.65 16 13 C -0.18 -1.82 10.09 -26.69 -0.27 -2.09 16 14 C -0.18 -1.81 10.25 -26.69 -0.27 -2.08 16 15 C 0.52 10.25 7.41 -12.98 -0.10 10.15 16 16 O -0.52 -12.21 12.07 -19.61 -0.24 -12.45 16 17 C -0.16 -2.28 9.31 -37.37 -0.35 -2.63 16 18 C -0.04 -0.52 10.15 -37.40 -0.38 -0.90 16 19 C 0.07 1.03 5.61 -36.39 -0.20 0.83 16 20 C -0.21 -2.99 10.88 -39.06 -0.42 -3.41 16 21 C -0.13 -1.99 10.64 -39.18 -0.42 -2.41 16 22 C -0.07 -1.30 7.16 -36.22 -0.26 -1.56 16 23 C 0.61 10.61 8.07 -12.71 -0.10 10.51 16 24 N -0.84 -11.79 8.87 30.34 0.27 -11.52 16 25 O -0.54 -10.42 17.70 5.24 0.09 -10.33 16 26 O -0.11 -2.03 7.48 -20.92 -0.16 -2.19 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.07 0.84 5.76 -51.93 -0.30 0.54 16 32 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.09 0.78 7.51 -51.93 -0.39 0.39 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.14 1.44 5.53 -52.48 -0.29 1.15 16 38 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.41 5.58 8.58 -40.82 -0.35 5.23 16 42 H 0.41 4.72 8.93 -40.82 -0.36 4.36 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -35.08 366.47 -8.44 -43.52 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.42 Total: 9.26 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.79 Total: -1.21 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.57 Total: -48.90 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.30 Total: -24.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.08 -8.44 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826096956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.945 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds