Wall clock time and date at job start Tue Mar 31 2020 12:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00132 * 2 1 4 4 H 1.48494 * 109.46980 * 270.00291 * 3 2 1 5 5 H 1.48505 * 109.46897 * 29.99760 * 3 2 1 6 6 H 1.48499 * 109.47368 * 149.99834 * 3 2 1 7 7 C 1.37881 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00159 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99861 * 269.99533 * 10 9 7 12 12 C 1.52996 * 109.47371 * 269.99910 * 11 10 9 13 13 C 1.53005 * 117.50028 * 243.74756 * 12 11 10 14 14 C 1.52999 * 117.49913 * 175.08830 * 12 11 10 15 15 C 1.34778 * 119.99616 * 89.99895 * 10 9 7 16 16 O 1.21705 * 120.00300 * 359.97438 * 15 10 9 17 17 C 1.46378 * 119.99504 * 179.97438 * 15 10 9 18 18 C 1.35250 * 119.99542 * 186.47173 * 17 15 10 19 19 C 1.46326 * 120.00437 * 9.05291 * 18 17 15 20 20 C 1.38077 * 125.82836 * 217.61239 * 19 18 17 21 21 C 1.39804 * 106.84216 * 179.88160 * 20 19 18 22 22 C 1.37723 * 106.89443 * 0.37812 * 21 20 19 23 23 C 1.47008 * 125.76961 * 179.78464 * 22 21 20 24 24 N 1.34777 * 119.99617 * 179.97438 * 23 22 21 25 25 O 1.21646 * 119.99947 * 0.02562 * 23 22 21 26 26 O 1.34577 * 125.82121 * 37.92324 * 19 18 17 27 27 H 0.96998 * 120.00203 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47418 * 59.99809 * 9 7 2 29 29 H 1.09000 * 109.47037 * 299.99509 * 9 7 2 30 30 H 1.09005 * 109.47300 * 30.00607 * 11 10 9 31 31 H 1.09001 * 109.46684 * 149.99930 * 11 10 9 32 32 H 1.08992 * 115.54872 * 29.42484 * 12 11 10 33 33 H 1.09000 * 117.49601 * 0.02562 * 13 12 11 34 34 H 1.08993 * 117.49224 * 145.01887 * 13 12 11 35 35 H 1.09004 * 117.50123 * 214.98344 * 14 12 11 36 36 H 1.09006 * 117.50043 * 0.02562 * 14 12 11 37 37 H 1.08003 * 119.99947 * 6.20022 * 17 15 10 38 38 H 1.08001 * 119.99564 * 189.05689 * 18 17 15 39 39 H 1.08005 * 126.57898 * 0.02562 * 20 19 18 40 40 H 1.08001 * 126.55200 * 180.13548 * 21 20 19 41 41 H 0.96994 * 120.00232 * 0.02562 * 24 23 22 42 42 H 0.97001 * 119.99418 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.3396 -6.7093 -1.7953 14 6 2.0099 -5.9382 -3.0758 15 6 2.6410 -4.1249 1.1678 16 8 2.2459 -3.6620 2.2218 17 6 3.5918 -5.2378 1.1678 18 6 3.9308 -5.8375 2.3317 19 6 3.2061 -5.5123 3.5606 20 6 3.7609 -5.3982 4.8199 21 6 2.7186 -5.0751 5.6939 22 6 1.5683 -5.0127 4.9392 23 6 0.2230 -4.7064 5.4469 24 7 -0.8256 -4.6755 4.6008 25 8 0.0566 -4.4800 6.6304 26 8 1.8842 -5.2792 3.6572 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5572 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.6868 -3.3879 -2.0279 31 1 3.6885 -4.5595 -1.1378 32 1 0.7111 -5.2089 -1.3876 33 1 3.3915 -6.8301 -1.5365 34 1 1.6912 -7.5442 -1.5296 35 1 1.1448 -6.2661 -3.6522 36 1 2.8454 -5.5519 -3.6598 37 1 4.0191 -5.5829 0.2379 38 1 4.7365 -6.5564 2.3540 39 1 4.8009 -5.5306 5.0795 40 1 2.7994 -4.9103 6.7582 41 1 -0.6928 -4.8557 3.6570 42 1 -1.7131 -4.4730 4.9357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826096956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:01 Heat of formation + Delta-G solvation = -31.356915 kcal Electronic energy + Delta-G solvation = -26883.969984 eV Core-core repulsion = 23024.431521 eV Total energy + Delta-G solvation = -3859.538463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.39365 -40.73373 -40.25640 -38.32628 -36.19203 -35.08040 -34.64622 -34.45299 -33.78579 -30.51238 -29.50533 -27.65532 -26.09982 -24.62041 -23.12985 -22.76051 -22.51825 -21.75853 -21.17601 -19.74030 -19.20898 -18.59708 -18.41043 -17.99982 -17.26111 -17.19171 -16.48808 -16.04438 -15.98056 -15.64755 -15.50864 -15.05062 -14.90229 -14.68400 -14.27974 -14.09831 -14.00567 -13.84995 -13.67144 -13.36380 -13.01248 -12.89026 -12.55850 -12.44632 -12.24264 -12.21131 -11.75796 -11.69225 -11.21075 -11.05586 -10.96923 -10.90351 -10.75374 -10.64858 -10.49125 -9.40387 -9.04157 -8.23155 -6.37478 -0.43478 0.51430 1.33354 1.36506 1.46128 1.58800 1.77833 2.10821 2.28576 2.45790 2.52905 2.58777 3.02388 3.06242 3.55200 3.78795 3.92608 3.95089 4.02530 4.08957 4.22381 4.30036 4.52757 4.64677 4.73303 4.79775 4.85870 4.89544 4.90280 4.97874 5.05649 5.12241 5.18757 5.29987 5.37400 5.37854 5.53230 5.57472 5.61891 5.87255 5.92391 6.06634 6.26911 6.70581 6.84628 7.01995 7.28770 7.54313 8.82897 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.005312 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.447780 B = 5270.240759 C = 7192.159935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.268 3.732 10 N -0.592 5.592 11 C 0.141 3.859 12 C -0.192 4.192 13 C -0.159 4.159 14 C -0.166 4.166 15 C 0.511 3.489 16 O -0.574 6.574 17 C -0.177 4.177 18 C -0.012 4.012 19 C 0.042 3.958 20 C -0.201 4.201 21 C -0.132 4.132 22 C -0.110 4.110 23 C 0.607 3.393 24 N -0.825 5.825 25 O -0.568 6.568 26 O -0.133 6.133 27 H 0.266 0.734 28 H 0.017 0.983 29 H -0.002 1.002 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.179 0.821 38 H 0.218 0.782 39 H 0.194 0.806 40 H 0.167 0.833 41 H 0.412 0.588 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -18.035 -1.986 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.070 0.930 9 C 0.147 3.853 10 N -0.321 5.321 11 C 0.018 3.982 12 C -0.212 4.212 13 C -0.196 4.196 14 C -0.204 4.204 15 C 0.302 3.698 16 O -0.455 6.455 17 C -0.197 4.197 18 C -0.031 4.031 19 C -0.011 4.011 20 C -0.220 4.220 21 C -0.152 4.152 22 C -0.164 4.164 23 C 0.394 3.606 24 N -0.387 5.387 25 O -0.450 6.450 26 O -0.027 6.027 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.016 0.984 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.196 0.804 38 H 0.234 0.766 39 H 0.211 0.789 40 H 0.184 0.816 41 H 0.242 0.758 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.585 -17.535 -0.980 19.549 hybrid contribution -0.755 1.604 -0.172 1.782 sum 7.829 -15.931 -1.151 17.788 Atomic orbital electron populations 1.70041 1.07460 1.27964 1.51235 1.25800 0.95743 1.02845 0.94616 0.85502 0.78322 0.78726 0.78813 1.18659 1.20918 1.19885 1.21700 0.93171 0.92011 1.50826 0.93003 1.18615 0.87842 0.83598 0.95295 1.48052 1.44406 1.33436 1.06231 1.21272 0.97306 0.94876 0.84728 1.22636 0.99704 0.95496 1.03355 1.23178 1.02665 0.92987 1.00751 1.23032 1.03991 1.03175 0.90161 1.19202 0.82392 0.84780 0.83421 1.90812 1.59443 1.63402 1.31879 1.23643 0.99321 0.95837 1.00949 1.22246 0.96745 0.98249 0.85884 1.21904 0.81289 1.00934 0.96966 1.22440 1.01611 1.07722 0.90210 1.22260 0.90671 1.00725 1.01559 1.22327 0.96355 1.14522 0.83182 1.16792 0.82861 0.75833 0.85146 1.43570 1.10540 1.72106 1.12529 1.90822 1.84794 1.52758 1.16598 1.84229 1.26275 1.65276 1.26927 0.92561 0.96539 0.98405 0.91231 0.87642 0.90612 0.86320 0.88564 0.88629 0.87271 0.80374 0.76556 0.78917 0.81586 0.75772 0.75058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 2 C 0.01 0.51 5.46 84.66 0.46 0.98 16 3 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 9 C 0.27 14.23 5.16 85.63 0.44 14.67 16 10 N -0.59 -24.00 2.46 -831.22 -2.04 -26.04 16 11 C 0.14 4.10 5.44 86.38 0.47 4.57 16 12 C -0.19 -4.76 6.01 -10.79 -0.06 -4.82 16 13 C -0.16 -2.57 10.09 30.62 0.31 -2.26 16 14 C -0.17 -2.97 10.25 30.62 0.31 -2.66 16 15 C 0.51 20.02 7.41 86.36 0.64 20.66 16 16 O -0.57 -27.87 12.07 19.34 0.23 -27.64 16 17 C -0.18 -4.33 9.31 23.70 0.22 -4.11 16 18 C -0.01 -0.25 10.15 23.69 0.24 -0.01 16 19 C 0.04 1.24 5.61 24.34 0.14 1.37 16 20 C -0.20 -5.20 10.88 22.61 0.25 -4.96 16 21 C -0.13 -4.08 10.64 22.53 0.24 -3.84 16 22 C -0.11 -3.97 7.16 24.45 0.18 -3.80 16 23 C 0.61 22.12 8.07 86.54 0.70 22.82 16 24 N -0.83 -24.83 8.87 -176.17 -1.56 -26.39 16 25 O -0.57 -23.07 17.70 -4.18 -0.07 -23.15 16 26 O -0.13 -4.81 7.48 14.67 0.11 -4.70 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 29 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 30 H 0.07 2.23 8.07 -2.38 -0.02 2.21 16 31 H 0.11 2.23 5.76 -2.39 -0.01 2.22 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 33 H 0.12 1.31 7.51 -2.39 -0.02 1.29 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.18 2.75 5.53 -2.91 -0.02 2.73 16 38 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.17 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.41 12.21 8.58 -92.71 -0.80 11.41 16 42 H 0.42 10.39 8.93 -92.71 -0.83 9.56 16 Total: -1.00 -83.11 366.47 3.20 -79.92 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.55 Total: 28.64 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.77 Total: 7.96 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -3.32 Total: -108.35 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: 0.27 Total: -55.49 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -83.11 3.20 -79.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826096956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.561 kcal (2) G-P(sol) polarization free energy of solvation -83.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds