Wall clock time and date at job start Tue Mar 31 2020 12:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46950 * 299.99935 * 3 2 1 6 6 H 1.48495 * 109.47228 * 59.99563 * 3 2 1 7 7 C 1.37877 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99954 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46760 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00015 * 90.00030 * 10 9 7 12 12 C 1.53003 * 109.47329 * 89.99763 * 11 10 9 13 13 C 1.53001 * 117.51964 * 116.28255 * 12 11 10 14 14 C 1.52999 * 60.00190 * 107.47982 * 13 12 11 15 15 C 1.34780 * 119.99998 * 269.99260 * 10 9 7 16 16 O 1.21701 * 119.99713 * 0.02562 * 15 10 9 17 17 C 1.46366 * 120.00031 * 180.02562 * 15 10 9 18 18 C 1.35256 * 119.99887 * 180.02562 * 17 15 10 19 19 C 1.46330 * 119.99962 * 179.97438 * 18 17 15 20 20 C 1.38081 * 125.82410 * 179.71790 * 19 18 17 21 21 C 1.39801 * 106.83794 * 179.85013 * 20 19 18 22 22 C 1.37721 * 106.89844 * 0.40748 * 21 20 19 23 23 C 1.47007 * 125.76821 * 179.74361 * 22 21 20 24 24 N 1.34781 * 119.99425 * 180.02562 * 23 22 21 25 25 O 1.21649 * 120.00231 * 0.02562 * 23 22 21 26 26 O 1.34576 * 125.82367 * 0.03116 * 19 18 17 27 27 H 0.97000 * 120.00206 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47159 * 59.99703 * 9 7 2 29 29 H 1.09000 * 109.46653 * 299.99407 * 9 7 2 30 30 H 1.08999 * 109.47381 * 329.99248 * 11 10 9 31 31 H 1.09005 * 109.46933 * 209.99427 * 11 10 9 32 32 H 1.09002 * 115.54973 * 330.58039 * 12 11 10 33 33 H 1.09001 * 117.49733 * 214.97413 * 13 12 11 34 34 H 1.08995 * 117.49577 * 359.97438 * 13 12 11 35 35 H 1.09004 * 117.50150 * 252.51496 * 14 13 12 36 36 H 1.09004 * 117.49681 * 107.48417 * 14 13 12 37 37 H 1.07997 * 120.00324 * 0.02562 * 17 15 10 38 38 H 1.07997 * 119.99788 * 359.97438 * 18 17 15 39 39 H 1.08003 * 126.57889 * 359.97438 * 20 19 18 40 40 H 1.08008 * 126.54580 * 180.12725 * 21 20 19 41 41 H 0.97000 * 120.00123 * 359.97438 * 24 23 22 42 42 H 0.97008 * 119.99446 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6780 -4.1688 1.2711 12 6 1.7470 -5.2999 1.7126 13 6 2.3379 -6.7085 1.8001 14 6 2.0077 -5.9367 3.0792 15 6 2.6418 -4.1255 -1.1649 16 8 2.2473 -3.6632 -2.2193 17 6 3.5925 -5.2383 -1.1637 18 6 4.0332 -5.7526 -2.3345 19 6 4.9841 -6.8648 -2.3333 20 6 5.5063 -7.4828 -3.4522 21 6 6.3692 -8.4838 -2.9963 22 6 6.3348 -8.4457 -1.6200 23 6 7.0879 -9.3280 -0.7169 24 7 6.9659 -9.1883 0.6181 25 8 7.8211 -10.1841 -1.1745 26 8 5.4944 -7.4636 -1.2414 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.6853 -3.3868 2.0304 31 1 3.6876 -4.5589 1.1416 32 1 0.7100 -5.2083 1.3896 33 1 1.6896 -7.5435 1.5345 34 1 3.3901 -6.8297 1.5426 35 1 2.8428 -5.5500 3.6635 36 1 1.1421 -6.2640 3.6552 37 1 3.9422 -5.6488 -0.2280 38 1 3.6832 -5.3423 -3.2702 39 1 5.2909 -7.2385 -4.4819 40 1 6.9484 -9.1608 -3.6068 41 1 6.3816 -8.5054 0.9829 42 1 7.4632 -9.7703 1.2140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826096957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:06 Heat of formation + Delta-G solvation = -40.512571 kcal Electronic energy + Delta-G solvation = -25857.333516 eV Core-core repulsion = 21997.398033 eV Total energy + Delta-G solvation = -3859.935482 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.65725 -40.84574 -40.29580 -38.39980 -36.23969 -35.19240 -34.74370 -34.50474 -34.05100 -30.68738 -29.55768 -27.75080 -26.25039 -24.62858 -23.17417 -23.01982 -22.42964 -21.81698 -21.20562 -19.68357 -19.37974 -18.61677 -18.46342 -17.95265 -17.48662 -17.29526 -16.53876 -16.32520 -16.01294 -15.87152 -15.55490 -15.41140 -14.82064 -14.74541 -14.30857 -14.19870 -14.10779 -13.87879 -13.61242 -13.43598 -13.04067 -12.89909 -12.58320 -12.47824 -12.26677 -12.23066 -11.75101 -11.68784 -11.63385 -11.25220 -11.03090 -11.00381 -10.83633 -10.64785 -10.61854 -9.53592 -9.14981 -8.22340 -6.37267 -0.72648 0.46225 1.37149 1.39031 1.39524 1.50624 1.52574 2.03524 2.22221 2.38537 2.45457 2.48005 2.96783 3.07378 3.36895 3.77935 3.81759 3.89371 3.95228 4.04024 4.07847 4.19270 4.35226 4.50484 4.58815 4.72773 4.78099 4.82740 4.85313 4.90316 4.97960 5.08674 5.16439 5.26260 5.30893 5.33640 5.34683 5.55855 5.61866 5.80404 5.82813 6.05224 6.26519 6.68210 6.75276 7.08216 7.26040 7.41652 8.84931 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003088 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.339175 B = 9064.078076 C = 9994.436346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.263 3.737 10 N -0.590 5.590 11 C 0.140 3.860 12 C -0.195 4.195 13 C -0.163 4.163 14 C -0.159 4.159 15 C 0.527 3.473 16 O -0.595 6.595 17 C -0.172 4.172 18 C -0.007 4.007 19 C 0.032 3.968 20 C -0.175 4.175 21 C -0.121 4.121 22 C -0.089 4.089 23 C 0.611 3.389 24 N -0.821 5.821 25 O -0.560 6.560 26 O -0.152 6.152 27 H 0.267 0.733 28 H -0.001 1.001 29 H 0.023 0.977 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.187 0.813 40 H 0.177 0.823 41 H 0.419 0.581 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.546 -19.149 3.938 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.141 3.859 10 N -0.318 5.318 11 C 0.018 3.982 12 C -0.215 4.215 13 C -0.200 4.200 14 C -0.196 4.196 15 C 0.318 3.682 16 O -0.479 6.479 17 C -0.193 4.193 18 C -0.027 4.027 19 C -0.019 4.019 20 C -0.194 4.194 21 C -0.141 4.141 22 C -0.142 4.142 23 C 0.396 3.604 24 N -0.385 5.385 25 O -0.441 6.441 26 O -0.047 6.047 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.205 0.795 40 H 0.194 0.806 41 H 0.251 0.749 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.519 -19.182 3.354 23.150 hybrid contribution -0.423 1.328 0.146 1.402 sum 12.096 -17.853 3.500 21.847 Atomic orbital electron populations 1.70058 1.07582 1.28111 1.51052 1.25851 0.95778 1.03032 0.94416 0.85364 0.78820 0.78659 0.77944 1.19027 1.20773 1.19477 1.21725 0.93313 0.91818 1.51175 0.92722 1.18744 0.87860 0.83549 0.95713 1.48068 1.44289 1.33308 1.06179 1.21297 0.97127 0.95143 0.84664 1.22661 0.99812 0.95300 1.03721 1.23141 1.02359 0.93172 1.01327 1.23025 1.04092 1.02597 0.89902 1.18819 0.82196 0.83778 0.83440 1.90756 1.60730 1.63938 1.32463 1.23228 0.98683 0.96812 1.00566 1.21578 0.91171 0.90005 0.99898 1.21178 0.99311 0.96916 0.84533 1.22578 0.99238 0.97137 1.00446 1.22381 0.99496 0.99522 0.92727 1.22517 1.00732 0.95737 0.95212 1.16575 0.79776 0.81235 0.82846 1.43565 1.49385 1.40019 1.05488 1.90907 1.40301 1.35798 1.77113 1.83996 1.47345 1.38793 1.34605 0.92398 0.98288 0.95946 0.90527 0.88203 0.90255 0.88591 0.86909 0.87055 0.88294 0.82513 0.82185 0.79536 0.80566 0.74936 0.74586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.26 14.12 5.16 85.63 0.44 14.56 16 10 N -0.59 -24.85 2.46 -831.23 -2.04 -26.89 16 11 C 0.14 4.27 5.40 86.38 0.47 4.73 16 12 C -0.20 -5.05 6.01 -10.79 -0.06 -5.11 16 13 C -0.16 -2.88 9.88 30.59 0.30 -2.58 16 14 C -0.16 -2.88 10.25 30.60 0.31 -2.57 16 15 C 0.53 21.75 7.60 86.36 0.66 22.41 16 16 O -0.60 -30.32 15.82 -4.35 -0.07 -30.39 16 17 C -0.17 -4.90 8.87 23.70 0.21 -4.69 16 18 C -0.01 -0.17 9.64 23.69 0.23 0.06 16 19 C 0.03 0.66 7.02 24.34 0.17 0.83 16 20 C -0.18 -3.01 10.88 22.61 0.25 -2.76 16 21 C -0.12 -2.14 10.64 22.53 0.24 -1.90 16 22 C -0.09 -1.67 7.16 24.45 0.18 -1.50 16 23 C 0.61 11.12 8.07 86.54 0.70 11.82 16 24 N -0.82 -8.04 8.87 -176.17 -1.56 -9.60 16 25 O -0.56 -14.01 17.70 -4.18 -0.07 -14.08 16 26 O -0.15 -2.85 10.01 -9.02 -0.09 -2.94 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 29 H 0.02 1.23 8.07 -2.39 -0.02 1.22 16 30 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 31 H 0.10 2.36 5.83 -2.38 -0.01 2.35 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.51 7.35 -2.39 -0.02 1.49 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.16 3.44 4.94 -2.91 -0.01 3.43 16 38 H 0.16 4.11 7.53 -2.91 -0.02 4.09 16 39 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.42 2.48 8.58 -92.71 -0.80 1.68 16 42 H 0.42 2.60 8.93 -92.70 -0.83 1.77 16 Total: -1.00 -78.57 371.96 2.72 -75.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -0.54 Total: 13.63 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.79 Total: 3.46 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -3.32 Total: -92.13 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.23 Total: -47.41 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -78.57 2.72 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826096957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.338 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds