Wall clock time and date at job start Tue Mar 31 2020 12:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.06780 * 2 1 4 4 O 1.45491 * 110.08637 * 238.40892 * 2 1 3 5 5 C 1.34482 * 108.97987 * 240.78748 * 4 2 1 6 6 O 1.21525 * 124.84869 * 179.97438 * 5 4 2 7 7 C 1.46775 * 110.29266 * 359.77946 * 5 4 2 8 8 C 1.40047 * 108.04097 * 0.37640 * 7 5 4 9 9 C 1.37595 * 119.08668 * 179.83411 * 8 7 5 10 10 C 1.38667 * 119.08860 * 359.74211 * 9 8 7 11 11 N 1.31860 * 121.14556 * 359.97438 * 10 9 8 12 12 C 1.32546 * 122.06722 * 0.02562 * 11 10 9 13 13 N 1.38223 * 119.95834 * 179.97438 * 12 11 10 14 14 C 1.48533 * 110.99996 * 117.39753 * 13 12 11 15 15 C 1.55103 * 103.28515 * 200.33079 * 14 13 12 16 16 C 1.54595 * 102.84457 * 37.30647 * 15 14 13 17 17 O 1.42905 * 110.30952 * 219.18552 * 16 15 14 18 18 C 1.50704 * 110.31013 * 97.11641 * 16 15 14 19 19 H 1.08003 * 119.99531 * 242.78485 * 18 16 15 20 20 C 1.37871 * 120.00099 * 62.79257 * 18 16 15 21 21 N 1.31523 * 119.99832 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 120.00214 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47200 * 89.99726 * 22 20 18 24 24 H 1.48502 * 109.47512 * 210.00024 * 22 20 18 25 25 H 1.48504 * 109.47338 * 330.00007 * 22 20 18 26 26 C 1.47906 * 111.00408 * 359.97438 * 13 12 11 27 27 H 1.09002 * 109.46970 * 298.46812 * 1 2 3 28 28 H 1.08998 * 109.47062 * 58.46831 * 1 2 3 29 29 H 1.08994 * 109.47161 * 178.47066 * 1 2 3 30 30 H 1.08998 * 109.46882 * 181.52648 * 3 2 1 31 31 H 1.08999 * 109.47180 * 301.52777 * 3 2 1 32 32 H 1.08998 * 109.47337 * 61.53410 * 3 2 1 33 33 H 1.08005 * 120.45895 * 179.76953 * 9 8 7 34 34 H 1.08006 * 119.43062 * 180.02562 * 10 9 8 35 35 H 1.09003 * 110.66452 * 318.71384 * 14 13 12 36 36 H 1.09001 * 110.67045 * 81.67461 * 14 13 12 37 37 H 1.09003 * 110.71219 * 278.99450 * 15 14 13 38 38 H 1.08998 * 110.81026 * 155.65894 * 15 14 13 39 39 H 0.96697 * 113.99904 * 297.21134 * 17 16 15 40 40 H 0.96998 * 119.99549 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.91186 * 26.48872 * 26 13 12 42 42 H 1.09005 * 109.91324 * 265.19775 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 8 2.0297 -0.7158 -1.1639 5 6 2.7628 -1.7648 -0.7508 6 8 3.3162 -2.5580 -1.4866 7 6 2.8028 -1.8119 0.7156 8 6 2.0469 -0.7392 1.2048 9 6 1.9289 -0.5695 2.5652 10 6 2.5572 -1.4684 3.4137 11 7 3.2610 -2.4771 2.9385 12 6 3.4048 -2.6836 1.6372 13 7 4.1530 -3.7550 1.1868 14 6 3.3127 -4.7023 0.4106 15 6 4.1284 -6.0208 0.4546 16 6 4.7210 -6.0108 1.8824 17 8 6.0627 -6.5025 1.8661 18 6 3.8710 -6.8435 2.8074 19 1 3.3745 -6.3807 3.6474 20 6 3.7273 -8.1959 2.5812 21 7 4.3317 -8.7593 1.5579 22 14 2.6744 -9.2280 3.7280 23 1 1.2751 -9.2486 3.2310 24 1 3.2042 -10.6146 3.7729 25 1 2.7066 -8.6415 5.0919 26 6 4.6985 -4.5341 2.3196 27 1 -0.3633 0.4899 0.9034 28 1 -0.3633 0.5374 -0.8759 29 1 -0.3633 -1.0272 -0.0274 30 1 3.1446 1.4259 -0.0274 31 1 1.6749 1.9628 -0.8760 32 1 1.7196 1.9465 0.9034 33 1 1.3544 0.2523 2.9666 34 1 2.4678 -1.3406 4.4825 35 1 2.3420 -4.8358 0.8882 36 1 3.1906 -4.3563 -0.6158 37 1 4.9220 -6.0083 -0.2925 38 1 3.4777 -6.8837 0.3131 39 1 6.1411 -7.4221 1.5776 40 1 4.2310 -9.7109 1.3990 41 1 4.0588 -4.4154 3.1940 42 1 5.7102 -4.1986 2.5479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826615101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:18 Heat of formation + Delta-G solvation = -61.937414 kcal Electronic energy + Delta-G solvation = -27764.255149 eV Core-core repulsion = 23903.390615 eV Total energy + Delta-G solvation = -3860.864533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05527 -39.73964 -38.26944 -37.37797 -34.98708 -34.01989 -32.14733 -31.90495 -31.22060 -28.54831 -27.99938 -27.85398 -25.14522 -24.61192 -23.56541 -22.39904 -21.22347 -19.73510 -19.48880 -17.69667 -17.24964 -16.97825 -16.56750 -16.39619 -15.54747 -15.31492 -14.97650 -14.74616 -14.53839 -14.08521 -14.02746 -13.74625 -13.46474 -13.08459 -12.86813 -12.69328 -12.61601 -12.41775 -12.10875 -12.09227 -11.77156 -11.51729 -11.23928 -11.13835 -10.99291 -10.73780 -10.57597 -10.46303 -10.21112 -10.07031 -9.87301 -9.57524 -9.40060 -9.20099 -8.61634 -8.13872 -7.88725 -6.22626 -4.32386 0.45090 1.06375 2.55449 2.84459 3.20559 3.28349 3.32086 3.55180 3.59455 3.86336 3.99921 4.28832 4.32520 4.47795 4.56132 4.76463 5.02001 5.07808 5.12784 5.18968 5.24496 5.27850 5.31287 5.49935 5.61064 5.67139 5.74207 5.82137 5.93146 5.95796 6.18715 6.24200 6.48660 6.58639 6.72215 6.84805 7.03805 7.10960 7.32675 7.51558 7.53332 7.61871 7.78565 7.93456 8.17648 8.71124 9.36433 9.53437 10.83385 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.004034 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.845115 B = 6938.668092 C = 7303.280269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.142 3.858 3 C -0.146 4.146 4 O -0.317 6.317 5 C 0.527 3.473 6 O -0.435 6.435 7 C -0.277 4.277 8 C -0.026 4.026 9 C -0.197 4.197 10 C 0.175 3.825 11 N -0.516 5.516 12 C 0.405 3.595 13 N -0.454 5.454 14 C 0.045 3.955 15 C -0.127 4.127 16 C 0.246 3.754 17 O -0.588 6.588 18 C -0.533 4.533 19 H 0.062 0.938 20 C 0.069 3.931 21 N -0.894 5.894 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.050 3.950 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.383 0.617 40 H 0.268 0.732 41 H 0.088 0.912 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 18.889 0.174 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.105 3.895 3 C -0.204 4.204 4 O -0.234 6.234 5 C 0.369 3.631 6 O -0.319 6.319 7 C -0.285 4.285 8 C -0.035 4.035 9 C -0.218 4.218 10 C 0.013 3.987 11 N -0.230 5.230 12 C 0.171 3.829 13 N -0.168 5.168 14 C -0.079 4.079 15 C -0.166 4.166 16 C 0.205 3.795 17 O -0.397 6.397 18 C -0.571 4.571 19 H 0.080 0.920 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.076 4.076 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.159 0.841 34 H 0.186 0.814 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.646 18.521 -0.102 20.037 hybrid contribution -1.526 -0.812 0.400 1.775 sum -9.173 17.708 0.298 19.945 Atomic orbital electron populations 1.22017 0.90403 1.04093 1.03919 1.21331 0.95781 0.92349 0.80076 1.22009 1.02593 0.91853 1.03906 1.87328 1.63074 1.39845 1.33168 1.20045 0.76395 0.79400 0.87309 1.90881 1.41106 1.37383 1.62533 1.21049 1.09925 1.01986 0.95492 1.20862 0.93538 0.93963 0.95102 1.21038 1.06190 1.03793 0.90786 1.23033 0.88066 0.86981 1.00571 1.67949 1.19887 1.21508 1.13635 1.19822 0.83942 0.92461 0.86652 1.61283 1.26488 1.07855 1.21161 1.23531 0.94402 0.91690 0.98242 1.23135 0.99343 0.94410 0.99696 1.19390 0.81110 0.88139 0.90842 1.86116 1.28779 1.33779 1.90999 1.21724 1.29725 0.93422 1.12277 0.92015 1.25014 0.95326 0.97833 0.95097 1.69660 1.43477 1.12165 1.28109 0.86465 0.80189 0.79396 0.81214 1.20598 1.20964 1.19723 1.23028 1.00199 0.93162 0.91197 0.89775 0.90299 0.91193 0.91235 0.90311 0.89788 0.84053 0.81433 0.93258 0.88600 0.92620 0.89070 0.76653 0.92171 0.89413 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.94 37.16 0.33 -0.77 16 2 C 0.14 1.46 1.39 -91.86 -0.13 1.34 16 3 C -0.15 -1.08 8.94 37.16 0.33 -0.74 16 4 O -0.32 -4.56 10.52 -39.55 -0.42 -4.97 16 5 C 0.53 9.23 8.33 34.18 0.28 9.51 16 6 O -0.44 -8.98 15.08 -18.96 -0.29 -9.26 16 7 C -0.28 -4.60 5.88 -104.95 -0.62 -5.22 16 8 C -0.03 -0.32 5.03 -104.27 -0.52 -0.84 16 9 C -0.20 -1.94 10.09 -39.66 -0.40 -2.34 16 10 C 0.18 2.09 11.18 -17.38 -0.19 1.89 16 11 N -0.52 -8.78 8.12 -12.14 -0.10 -8.88 16 12 C 0.40 7.63 6.22 -155.17 -0.96 6.67 16 13 N -0.45 -9.84 5.23 -168.90 -0.88 -10.72 16 14 C 0.04 0.98 5.77 -1.81 -0.01 0.97 16 15 C -0.13 -3.10 5.89 -24.78 -0.15 -3.25 16 16 C 0.25 6.30 0.99 -90.40 -0.09 6.21 16 17 O -0.59 -15.86 12.93 -35.23 -0.46 -16.32 16 18 C -0.53 -14.37 8.23 -34.44 -0.28 -14.65 16 19 H 0.06 1.67 7.35 -52.48 -0.39 1.28 16 20 C 0.07 1.83 5.01 -17.82 -0.09 1.74 16 21 N -0.89 -23.88 10.38 55.43 0.58 -23.30 16 22 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.05 1.16 5.83 -2.74 -0.02 1.14 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.05 1.07 7.99 -51.93 -0.42 0.66 16 36 H 0.10 2.08 5.23 -51.93 -0.27 1.81 16 37 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 38 H 0.09 2.36 6.64 -51.93 -0.34 2.01 16 39 H 0.38 10.35 7.19 45.56 0.33 10.68 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.09 2.04 5.74 -51.93 -0.30 1.74 16 42 H 0.07 1.77 7.96 -51.93 -0.41 1.35 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -31.43 340.30 -8.71 -40.14 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.74 Total: 10.92 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.51 Total: 1.66 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.41 Total: -42.91 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.16 Total: -30.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.43 -8.71 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826615101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.797 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds