Wall clock time and date at job start Tue Mar 31 2020 12:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.06780 * 2 1 4 4 O 1.45491 * 110.08637 * 238.40892 * 2 1 3 5 5 C 1.34482 * 108.97987 * 240.78748 * 4 2 1 6 6 O 1.21525 * 124.84869 * 179.97438 * 5 4 2 7 7 C 1.46775 * 110.29266 * 359.77946 * 5 4 2 8 8 C 1.40047 * 108.04097 * 0.37640 * 7 5 4 9 9 C 1.37595 * 119.08668 * 179.83411 * 8 7 5 10 10 C 1.38667 * 119.08860 * 359.74211 * 9 8 7 11 11 N 1.31860 * 121.14556 * 359.97438 * 10 9 8 12 12 C 1.32546 * 122.06722 * 0.02562 * 11 10 9 13 13 N 1.38223 * 119.95834 * 179.97438 * 12 11 10 14 14 C 1.48533 * 110.99996 * 117.39753 * 13 12 11 15 15 C 1.55103 * 103.28515 * 200.33079 * 14 13 12 16 16 C 1.54595 * 102.84457 * 37.30647 * 15 14 13 17 17 O 1.42905 * 110.30952 * 219.18552 * 16 15 14 18 18 C 1.50704 * 110.31013 * 97.11641 * 16 15 14 19 19 H 1.08003 * 119.99531 * 242.78485 * 18 16 15 20 20 C 1.37871 * 120.00099 * 62.79257 * 18 16 15 21 21 N 1.31523 * 119.99832 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 120.00214 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47200 * 89.99726 * 22 20 18 24 24 H 1.48502 * 109.47512 * 210.00024 * 22 20 18 25 25 H 1.48504 * 109.47338 * 330.00007 * 22 20 18 26 26 C 1.47906 * 111.00408 * 359.97438 * 13 12 11 27 27 H 1.09002 * 109.46970 * 298.46812 * 1 2 3 28 28 H 1.08998 * 109.47062 * 58.46831 * 1 2 3 29 29 H 1.08994 * 109.47161 * 178.47066 * 1 2 3 30 30 H 1.08998 * 109.46882 * 181.52648 * 3 2 1 31 31 H 1.08999 * 109.47180 * 301.52777 * 3 2 1 32 32 H 1.08998 * 109.47337 * 61.53410 * 3 2 1 33 33 H 1.08005 * 120.45895 * 179.76953 * 9 8 7 34 34 H 1.08006 * 119.43062 * 180.02562 * 10 9 8 35 35 H 1.09003 * 110.66452 * 318.71384 * 14 13 12 36 36 H 1.09001 * 110.67045 * 81.67461 * 14 13 12 37 37 H 1.09003 * 110.71219 * 278.99450 * 15 14 13 38 38 H 1.08998 * 110.81026 * 155.65894 * 15 14 13 39 39 H 0.96697 * 113.99904 * 297.21134 * 17 16 15 40 40 H 0.96998 * 119.99549 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.91186 * 26.48872 * 26 13 12 42 42 H 1.09005 * 109.91324 * 265.19775 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0550 1.4371 0.0000 4 8 2.0297 -0.7158 -1.1639 5 6 2.7628 -1.7648 -0.7508 6 8 3.3162 -2.5580 -1.4866 7 6 2.8028 -1.8119 0.7156 8 6 2.0469 -0.7392 1.2048 9 6 1.9289 -0.5695 2.5652 10 6 2.5572 -1.4684 3.4137 11 7 3.2610 -2.4771 2.9385 12 6 3.4048 -2.6836 1.6372 13 7 4.1530 -3.7550 1.1868 14 6 3.3127 -4.7023 0.4106 15 6 4.1284 -6.0208 0.4546 16 6 4.7210 -6.0108 1.8824 17 8 6.0627 -6.5025 1.8661 18 6 3.8710 -6.8435 2.8074 19 1 3.3745 -6.3807 3.6474 20 6 3.7273 -8.1959 2.5812 21 7 4.3317 -8.7593 1.5579 22 14 2.6744 -9.2280 3.7280 23 1 1.2751 -9.2486 3.2310 24 1 3.2042 -10.6146 3.7729 25 1 2.7066 -8.6415 5.0919 26 6 4.6985 -4.5341 2.3196 27 1 -0.3633 0.4899 0.9034 28 1 -0.3633 0.5374 -0.8759 29 1 -0.3633 -1.0272 -0.0274 30 1 3.1446 1.4259 -0.0274 31 1 1.6749 1.9628 -0.8760 32 1 1.7196 1.9465 0.9034 33 1 1.3544 0.2523 2.9666 34 1 2.4678 -1.3406 4.4825 35 1 2.3420 -4.8358 0.8882 36 1 3.1906 -4.3563 -0.6158 37 1 4.9220 -6.0083 -0.2925 38 1 3.4777 -6.8837 0.3131 39 1 6.1411 -7.4221 1.5776 40 1 4.2310 -9.7109 1.3990 41 1 4.0588 -4.4154 3.1940 42 1 5.7102 -4.1986 2.5479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826615101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:17 Heat of formation + Delta-G solvation = -84.329454 kcal Electronic energy + Delta-G solvation = -27765.226140 eV Core-core repulsion = 23903.390615 eV Total energy + Delta-G solvation = -3861.835525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.16780 -41.11499 -39.71363 -38.79024 -36.77669 -35.02939 -34.23396 -32.98076 -32.60745 -30.06709 -29.85731 -28.39607 -26.98172 -25.77238 -24.81466 -23.54836 -22.84931 -21.37123 -20.90190 -19.20329 -18.80906 -18.31962 -17.92243 -17.52900 -17.15375 -16.78611 -16.59003 -16.04288 -15.61511 -15.49902 -15.30726 -14.94344 -14.73056 -14.64364 -14.47192 -13.92539 -13.62430 -13.45663 -13.27972 -13.21431 -13.13921 -12.94898 -12.79559 -12.68155 -12.52351 -12.43275 -12.26707 -12.13669 -11.97541 -11.45429 -11.23969 -10.98237 -10.89302 -10.66982 -10.63012 -10.17872 -9.34705 -8.25223 -6.43403 -0.67823 -0.00083 1.32332 1.38557 1.40731 1.51040 1.82141 2.33736 2.40072 2.60021 2.71292 2.80253 2.98069 3.37492 3.58459 3.73170 3.81114 3.85087 3.98914 4.04067 4.11480 4.29968 4.34292 4.50028 4.61057 4.65034 4.70004 4.74382 4.76576 4.82754 4.88709 4.96097 5.08478 5.15470 5.21864 5.27179 5.33018 5.37016 5.48543 5.55928 5.72188 6.01014 6.11304 6.31084 6.62537 6.80252 7.27773 7.39642 8.80072 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.004034 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.845115 B = 6938.668092 C = 7303.280269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 C -0.143 4.143 4 O -0.325 6.325 5 C 0.524 3.476 6 O -0.485 6.485 7 C -0.302 4.302 8 C -0.018 4.018 9 C -0.160 4.160 10 C 0.171 3.829 11 N -0.548 5.548 12 C 0.371 3.629 13 N -0.469 5.469 14 C 0.061 3.939 15 C -0.119 4.119 16 C 0.232 3.768 17 O -0.598 6.598 18 C -0.555 4.555 19 H 0.056 0.944 20 C 0.029 3.971 21 N -0.911 5.911 22 Si 0.964 3.036 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.270 1.270 26 C 0.065 3.935 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.204 0.796 34 H 0.212 0.788 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.378 0.622 40 H 0.272 0.728 41 H 0.086 0.914 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 22.164 2.303 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.097 3.903 3 C -0.200 4.200 4 O -0.241 6.241 5 C 0.368 3.632 6 O -0.373 6.373 7 C -0.309 4.309 8 C -0.027 4.027 9 C -0.180 4.180 10 C 0.011 3.989 11 N -0.262 5.262 12 C 0.140 3.860 13 N -0.184 5.184 14 C -0.063 4.063 15 C -0.158 4.158 16 C 0.192 3.808 17 O -0.407 6.407 18 C -0.593 4.593 19 H 0.074 0.926 20 C -0.171 4.171 21 N -0.551 5.551 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.204 1.204 25 H -0.195 1.195 26 C -0.061 4.061 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.221 0.779 34 H 0.228 0.772 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.228 0.772 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.528 21.867 2.046 24.355 hybrid contribution -0.748 -1.624 -0.190 1.798 sum -11.277 20.243 1.856 23.246 Atomic orbital electron populations 1.22122 0.87700 1.03720 1.06592 1.21949 0.97639 0.93017 0.77701 1.22113 1.01568 0.89757 1.06578 1.87310 1.62235 1.38964 1.35610 1.20346 0.75820 0.79364 0.87707 1.90832 1.43436 1.39479 1.63593 1.21074 1.11441 1.03608 0.94822 1.21313 0.92156 0.92374 0.96821 1.21672 1.03625 1.03596 0.89103 1.23903 0.86349 0.85649 1.02960 1.67856 1.21514 1.24131 1.12742 1.19769 0.85982 0.92159 0.88115 1.61273 1.28229 1.08161 1.20761 1.23234 0.93729 0.90841 0.98478 1.22921 0.98800 0.95170 0.98864 1.19631 0.80356 0.89492 0.91329 1.86108 1.30034 1.33464 1.91063 1.21860 1.30609 0.94261 1.12597 0.92622 1.25739 0.96293 0.98673 0.96422 1.69752 1.43882 1.12498 1.28961 0.85470 0.78650 0.77779 0.79214 1.19984 1.20362 1.19470 1.22725 0.99523 0.91853 0.92000 0.85985 0.88859 0.93019 0.92912 0.88891 0.85973 0.77933 0.77162 0.93859 0.88645 0.93929 0.91043 0.77195 0.91890 0.89611 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.94 71.98 0.64 -0.89 16 2 C 0.13 2.30 1.39 -11.60 -0.02 2.28 16 3 C -0.14 -1.46 8.94 71.98 0.64 -0.82 16 4 O -0.32 -9.15 10.52 -54.25 -0.57 -9.72 16 5 C 0.52 18.95 8.33 70.05 0.58 19.53 16 6 O -0.49 -21.40 15.08 19.44 0.29 -21.11 16 7 C -0.30 -10.00 5.88 -20.08 -0.12 -10.12 16 8 C -0.02 -0.39 5.03 -19.64 -0.10 -0.49 16 9 C -0.16 -2.25 10.09 22.22 0.22 -2.02 16 10 C 0.17 3.40 11.18 84.79 0.95 4.34 16 11 N -0.55 -18.15 8.12 -192.32 -1.56 -19.72 16 12 C 0.37 14.25 6.22 133.60 0.83 15.08 16 13 N -0.47 -21.41 5.23 -688.29 -3.60 -25.01 16 14 C 0.06 2.88 5.77 86.71 0.50 3.38 16 15 C -0.12 -6.18 5.89 31.86 0.19 -5.99 16 16 C 0.23 12.51 0.99 -10.65 -0.01 12.50 16 17 O -0.60 -33.98 12.93 -148.98 -1.93 -35.90 16 18 C -0.56 -30.89 8.23 25.60 0.21 -30.68 16 19 H 0.06 3.08 7.35 -2.91 -0.02 3.06 16 20 C 0.03 1.58 5.01 84.65 0.42 2.00 16 21 N -0.91 -50.01 10.38 21.45 0.22 -49.79 16 22 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.07 3.20 5.83 86.46 0.50 3.70 16 27 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.20 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.04 2.00 7.99 -2.39 -0.02 1.99 16 36 H 0.10 4.47 5.23 -2.39 -0.01 4.45 16 37 H 0.04 2.26 8.08 -2.39 -0.02 2.24 16 38 H 0.07 3.93 6.64 -2.39 -0.02 3.91 16 39 H 0.38 21.56 7.19 -74.06 -0.53 21.03 16 40 H 0.27 14.10 8.31 -92.71 -0.77 13.32 16 41 H 0.09 4.14 5.74 -2.39 -0.01 4.13 16 42 H 0.06 3.07 7.96 -2.38 -0.02 3.05 16 Total: -1.00 -75.64 340.30 0.88 -74.76 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.53 Total: 30.00 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 5.46 Total: 11.82 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -4.94 Total: -94.52 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -2.20 Total: -66.73 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -75.64 0.88 -74.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826615101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.571 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds