Wall clock time and date at job start Tue Mar 31 2020 12:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31232 * 1 3 3 Si 1.86793 * 119.99995 * 2 1 4 4 H 1.48506 * 109.47106 * 239.99858 * 3 2 1 5 5 H 1.48495 * 109.47456 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47069 * 120.00462 * 3 2 1 7 7 C 1.39272 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00087 * 158.79956 * 7 2 1 9 9 N 1.36507 * 119.99905 * 338.80030 * 7 2 1 10 10 C 1.34784 * 119.99838 * 177.21733 * 9 7 2 11 11 O 1.21795 * 119.99776 * 16.16042 * 10 9 7 12 12 C 1.41811 * 119.99979 * 196.16193 * 10 9 7 13 13 C 1.35493 * 120.00042 * 186.81936 * 12 10 9 14 14 C 1.46162 * 120.00482 * 179.97438 * 13 12 10 15 15 C 1.38223 * 125.83843 * 179.71514 * 14 13 12 16 16 C 1.39703 * 106.85218 * 179.88046 * 15 14 13 17 17 C 1.37811 * 106.91588 * 0.38208 * 16 15 14 18 18 C 1.46908 * 125.76509 * 179.73881 * 17 16 15 19 19 N 1.34778 * 119.99513 * 179.97438 * 18 17 16 20 20 O 1.21665 * 120.00207 * 0.02562 * 18 17 16 21 21 O 1.34612 * 125.82809 * 0.02971 * 14 13 12 22 22 C 1.46494 * 120.00339 * 357.22086 * 9 7 2 23 23 C 1.55241 * 110.57923 * 229.37876 * 22 9 7 24 24 C 1.54889 * 102.58571 * 203.33550 * 23 22 9 25 25 C 1.54268 * 104.31479 * 37.93128 * 24 23 22 26 26 C 1.53874 * 106.59587 * 336.32218 * 25 24 23 27 27 H 0.97003 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00109 * 6.82307 * 12 10 9 29 29 H 1.08001 * 119.99848 * 0.02562 * 13 12 10 30 30 H 1.08003 * 126.56844 * 0.02562 * 15 14 13 31 31 H 1.07998 * 126.54334 * 180.11924 * 16 15 14 32 32 H 0.97005 * 120.00173 * 359.97438 * 19 18 17 33 33 H 0.96998 * 120.00231 * 180.02562 * 19 18 17 34 34 H 1.09003 * 110.43310 * 351.95568 * 22 9 7 35 35 H 1.08996 * 110.90048 * 85.04919 * 23 22 9 36 36 H 1.09001 * 110.76577 * 321.56461 * 23 22 9 37 37 H 1.09004 * 110.48893 * 279.18762 * 24 23 22 38 38 H 1.09002 * 110.48687 * 156.67399 * 24 23 22 39 39 H 1.08995 * 110.03364 * 95.60884 * 25 24 23 40 40 H 1.09005 * 110.02966 * 216.99090 * 25 24 23 41 41 H 1.09005 * 110.03215 * 119.28444 * 26 25 24 42 42 H 1.09004 * 110.03202 * 240.66800 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6177 0.0000 4 1 3.1001 1.6963 -1.2125 5 1 1.2814 2.7464 0.0006 6 1 3.1001 1.6963 1.2124 7 6 2.0086 -1.2062 0.0005 8 1 3.0338 -1.2380 -0.3377 9 7 1.3953 -2.3481 0.4286 10 6 2.0503 -3.5249 0.3765 11 8 3.2598 -3.5429 0.2344 12 6 1.3312 -4.7422 0.4872 13 6 1.9988 -5.9180 0.5739 14 6 1.2578 -7.1726 0.6885 15 6 1.8130 -8.4352 0.7786 16 6 0.7516 -9.3385 0.8742 17 6 -0.4101 -8.5983 0.8305 18 6 -1.7749 -9.1380 0.8946 19 7 -2.8324 -8.3039 0.8422 20 8 -1.9507 -10.3376 0.9959 21 8 -0.0823 -7.2962 0.7185 22 6 0.0253 -2.2946 0.9444 23 6 -0.0752 -3.0367 2.3043 24 6 -1.5780 -3.4042 2.3780 25 6 -1.9511 -3.7770 0.9283 26 6 -0.9317 -3.0715 0.0168 27 1 -0.4850 0.8401 -0.0004 28 1 0.2513 -4.7320 0.5022 29 1 3.0787 -5.9282 0.5592 30 1 2.8657 -8.6768 0.7777 31 1 0.8269 -10.4123 0.9610 32 1 -2.6922 -7.3474 0.7626 33 1 -3.7336 -8.6601 0.8849 34 1 -0.3016 -1.2601 1.0497 35 1 0.2024 -2.3787 3.1277 36 1 0.5424 -3.9348 2.3010 37 1 -2.1639 -2.5489 2.7148 38 1 -1.7305 -4.2551 3.0420 39 1 -1.8888 -4.8567 0.7926 40 1 -2.9592 -3.4299 0.7012 41 1 -0.3746 -3.8088 -0.5612 42 1 -1.4448 -2.3819 -0.6535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828319446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:13 Heat of formation + Delta-G solvation = -21.690514 kcal Electronic energy + Delta-G solvation = -27215.051764 eV Core-core repulsion = 23355.932467 eV Total energy + Delta-G solvation = -3859.119297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45207 -39.68250 -39.22509 -36.75491 -34.70144 -34.02988 -33.08871 -32.81545 -31.79868 -29.12048 -28.17262 -27.26007 -25.59949 -24.07321 -22.17400 -21.52666 -20.48472 -19.96521 -19.75260 -18.55556 -18.33293 -17.64594 -17.00746 -16.30555 -16.15416 -15.32725 -15.13605 -14.77619 -14.47758 -14.40882 -14.11638 -13.90626 -13.58017 -13.10680 -13.03512 -12.96724 -12.90290 -12.29983 -12.13664 -11.65692 -11.49138 -11.06719 -10.91652 -10.78129 -10.59354 -10.57170 -10.55046 -10.28808 -10.17559 -10.07860 -9.97614 -9.81183 -9.70418 -9.03105 -8.62930 -7.98945 -7.78279 -6.53283 -3.96512 0.57153 1.67974 2.62106 2.80872 3.07223 3.09937 3.10733 3.15773 3.41649 3.88988 4.16884 4.56099 4.76683 4.86891 4.89633 5.01466 5.19549 5.30305 5.40461 5.58532 5.64185 5.75728 5.77456 5.92347 6.06305 6.07581 6.14315 6.22819 6.25486 6.33253 6.38502 6.48228 6.49018 6.56440 6.62324 6.70455 6.77523 6.92865 7.01652 7.18141 7.22336 7.57346 7.86950 7.97132 8.38627 8.91864 9.18963 9.80122 10.27168 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.003783 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.378788 B = 7400.478380 C = 8425.902154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.275 4.275 8 H 0.112 0.888 9 N -0.410 5.410 10 C 0.445 3.555 11 O -0.602 6.602 12 C -0.130 4.130 13 C -0.099 4.099 14 C 0.084 3.916 15 C -0.221 4.221 16 C -0.105 4.105 17 C -0.111 4.111 18 C 0.614 3.386 19 N -0.845 5.845 20 O -0.532 6.532 21 O -0.157 6.157 22 C 0.090 3.910 23 C -0.150 4.150 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.135 4.135 27 H 0.276 0.724 28 H 0.141 0.859 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.408 0.592 33 H 0.407 0.593 34 H 0.185 0.815 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -8.073 2.799 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.403 4.403 8 H 0.129 0.871 9 N -0.124 5.124 10 C 0.240 3.760 11 O -0.491 6.491 12 C -0.151 4.151 13 C -0.121 4.121 14 C 0.031 3.969 15 C -0.241 4.241 16 C -0.125 4.125 17 C -0.163 4.163 18 C 0.400 3.600 19 N -0.408 5.408 20 O -0.411 6.411 21 O -0.053 6.053 22 C -0.014 4.014 23 C -0.188 4.188 24 C -0.155 4.155 25 C -0.161 4.161 26 C -0.173 4.173 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.237 0.763 33 H 0.238 0.762 34 H 0.199 0.801 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.461 -8.373 2.747 10.927 hybrid contribution -0.049 0.855 -0.021 0.856 sum -6.509 -7.519 2.726 10.312 Atomic orbital electron populations 1.69223 1.06173 1.27668 1.45836 1.25410 0.95505 1.00350 0.96842 0.85829 0.79138 0.79402 0.79593 1.19443 1.20576 1.19576 1.20007 0.98848 0.84482 1.36963 0.87078 1.43828 1.12435 1.06195 1.49909 1.16624 0.87906 0.84021 0.87477 1.90661 1.13716 1.87332 1.57413 1.23265 1.01810 0.94013 0.96050 1.21349 0.98954 0.86817 1.04971 1.21591 0.79188 0.95919 1.00208 1.22093 1.00614 0.90726 1.10629 1.22003 0.90246 1.00833 0.99458 1.22098 0.95236 0.81435 1.17556 1.16549 0.82181 0.85577 0.75670 1.43706 1.08867 1.11413 1.76822 1.90890 1.84879 1.14168 1.51168 1.84060 1.24211 1.26680 1.70338 1.23991 0.81075 1.07376 0.88957 1.23328 0.95841 1.00140 0.99477 1.22217 0.96505 1.00418 0.96402 1.22117 0.99205 0.99311 0.95427 1.22727 0.97361 0.98716 0.98468 0.91273 0.84217 0.82522 0.82291 0.82347 0.76260 0.76156 0.80054 0.92040 0.91737 0.91704 0.92492 0.92756 0.92162 0.92202 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.56 9.86 55.51 0.55 -19.01 16 2 C 0.02 0.50 5.21 -17.42 -0.09 0.41 16 3 Si 0.93 18.79 29.60 -169.99 -5.03 13.75 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.27 -7.06 9.49 -15.09 -0.14 -7.20 16 8 H 0.11 3.01 7.32 -52.49 -0.38 2.62 16 9 N -0.41 -9.87 2.65 -108.93 -0.29 -10.16 16 10 C 0.45 10.64 6.65 -14.89 -0.10 10.54 16 11 O -0.60 -16.27 15.82 5.10 0.08 -16.19 16 12 C -0.13 -2.53 5.78 -39.20 -0.23 -2.76 16 13 C -0.10 -1.72 9.60 -37.38 -0.36 -2.08 16 14 C 0.08 1.28 7.02 -36.41 -0.26 1.03 16 15 C -0.22 -2.95 10.88 -39.04 -0.42 -3.38 16 16 C -0.10 -1.38 10.63 -39.19 -0.42 -1.80 16 17 C -0.11 -1.55 7.16 -36.23 -0.26 -1.81 16 18 C 0.61 8.07 8.07 -12.75 -0.10 7.97 16 19 N -0.85 -7.84 8.87 30.31 0.27 -7.57 16 20 O -0.53 -8.41 17.70 5.22 0.09 -8.32 16 21 O -0.16 -2.31 10.01 3.66 0.04 -2.27 16 22 C 0.09 1.86 2.55 -66.09 -0.17 1.69 16 23 C -0.15 -2.67 5.95 -24.55 -0.15 -2.82 16 24 C -0.12 -1.69 6.82 -25.07 -0.17 -1.86 16 25 C -0.12 -1.74 6.24 -25.61 -0.16 -1.90 16 26 C -0.13 -2.44 5.64 -25.62 -0.14 -2.59 16 27 H 0.28 5.95 8.31 -40.82 -0.34 5.61 16 28 H 0.14 2.51 3.00 -52.49 -0.16 2.35 16 29 H 0.16 2.74 7.48 -52.49 -0.39 2.34 16 30 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.41 3.32 8.58 -40.82 -0.35 2.97 16 33 H 0.41 2.88 8.93 -40.82 -0.36 2.52 16 34 H 0.18 4.12 4.26 -78.37 -0.33 3.78 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.19 5.19 -51.93 -0.27 0.92 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.68 7.80 -51.93 -0.41 0.28 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.13 5.34 -51.93 -0.28 0.85 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -29.38 346.53 -7.27 -36.65 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.17 Total: -6.55 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.53 Total: -36.75 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: 0.21 Total: -26.78 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.38 -7.27 -36.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.958 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds