Wall clock time and date at job start Tue Mar 31 2020 12:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31232 * 1 3 3 Si 1.86793 * 119.99995 * 2 1 4 4 H 1.48506 * 109.47106 * 239.99858 * 3 2 1 5 5 H 1.48495 * 109.47456 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47069 * 120.00462 * 3 2 1 7 7 C 1.39272 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00087 * 158.79956 * 7 2 1 9 9 N 1.36507 * 119.99905 * 338.80030 * 7 2 1 10 10 C 1.34784 * 119.99838 * 177.21733 * 9 7 2 11 11 O 1.21795 * 119.99776 * 16.16042 * 10 9 7 12 12 C 1.41811 * 119.99979 * 196.16193 * 10 9 7 13 13 C 1.35493 * 120.00042 * 186.81936 * 12 10 9 14 14 C 1.46162 * 120.00482 * 179.97438 * 13 12 10 15 15 C 1.38223 * 125.83843 * 179.71514 * 14 13 12 16 16 C 1.39703 * 106.85218 * 179.88046 * 15 14 13 17 17 C 1.37811 * 106.91588 * 0.38208 * 16 15 14 18 18 C 1.46908 * 125.76509 * 179.73881 * 17 16 15 19 19 N 1.34778 * 119.99513 * 179.97438 * 18 17 16 20 20 O 1.21665 * 120.00207 * 0.02562 * 18 17 16 21 21 O 1.34612 * 125.82809 * 0.02971 * 14 13 12 22 22 C 1.46494 * 120.00339 * 357.22086 * 9 7 2 23 23 C 1.55241 * 110.57923 * 229.37876 * 22 9 7 24 24 C 1.54889 * 102.58571 * 203.33550 * 23 22 9 25 25 C 1.54268 * 104.31479 * 37.93128 * 24 23 22 26 26 C 1.53874 * 106.59587 * 336.32218 * 25 24 23 27 27 H 0.97003 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00109 * 6.82307 * 12 10 9 29 29 H 1.08001 * 119.99848 * 0.02562 * 13 12 10 30 30 H 1.08003 * 126.56844 * 0.02562 * 15 14 13 31 31 H 1.07998 * 126.54334 * 180.11924 * 16 15 14 32 32 H 0.97005 * 120.00173 * 359.97438 * 19 18 17 33 33 H 0.96998 * 120.00231 * 180.02562 * 19 18 17 34 34 H 1.09003 * 110.43310 * 351.95568 * 22 9 7 35 35 H 1.08996 * 110.90048 * 85.04919 * 23 22 9 36 36 H 1.09001 * 110.76577 * 321.56461 * 23 22 9 37 37 H 1.09004 * 110.48893 * 279.18762 * 24 23 22 38 38 H 1.09002 * 110.48687 * 156.67399 * 24 23 22 39 39 H 1.08995 * 110.03364 * 95.60884 * 25 24 23 40 40 H 1.09005 * 110.02966 * 216.99090 * 25 24 23 41 41 H 1.09005 * 110.03215 * 119.28444 * 26 25 24 42 42 H 1.09004 * 110.03202 * 240.66800 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6177 0.0000 4 1 3.1001 1.6963 -1.2125 5 1 1.2814 2.7464 0.0006 6 1 3.1001 1.6963 1.2124 7 6 2.0086 -1.2062 0.0005 8 1 3.0338 -1.2380 -0.3377 9 7 1.3953 -2.3481 0.4286 10 6 2.0503 -3.5249 0.3765 11 8 3.2598 -3.5429 0.2344 12 6 1.3312 -4.7422 0.4872 13 6 1.9988 -5.9180 0.5739 14 6 1.2578 -7.1726 0.6885 15 6 1.8130 -8.4352 0.7786 16 6 0.7516 -9.3385 0.8742 17 6 -0.4101 -8.5983 0.8305 18 6 -1.7749 -9.1380 0.8946 19 7 -2.8324 -8.3039 0.8422 20 8 -1.9507 -10.3376 0.9959 21 8 -0.0823 -7.2962 0.7185 22 6 0.0253 -2.2946 0.9444 23 6 -0.0752 -3.0367 2.3043 24 6 -1.5780 -3.4042 2.3780 25 6 -1.9511 -3.7770 0.9283 26 6 -0.9317 -3.0715 0.0168 27 1 -0.4850 0.8401 -0.0004 28 1 0.2513 -4.7320 0.5022 29 1 3.0787 -5.9282 0.5592 30 1 2.8657 -8.6768 0.7777 31 1 0.8269 -10.4123 0.9610 32 1 -2.6922 -7.3474 0.7626 33 1 -3.7336 -8.6601 0.8849 34 1 -0.3016 -1.2601 1.0497 35 1 0.2024 -2.3787 3.1277 36 1 0.5424 -3.9348 2.3010 37 1 -2.1639 -2.5489 2.7148 38 1 -1.7305 -4.2551 3.0420 39 1 -1.8888 -4.8567 0.7926 40 1 -2.9592 -3.4299 0.7012 41 1 -0.3746 -3.8088 -0.5612 42 1 -1.4448 -2.3819 -0.6535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828319446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:12 Heat of formation + Delta-G solvation = -41.267628 kcal Electronic energy + Delta-G solvation = -27215.900691 eV Core-core repulsion = 23355.932467 eV Total energy + Delta-G solvation = -3859.968224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.58910 -41.31493 -40.27300 -38.36065 -36.33021 -35.05870 -34.42512 -33.99243 -33.56355 -30.38939 -29.51957 -28.73008 -27.15766 -25.50469 -23.43226 -22.72093 -21.73339 -21.20631 -21.11507 -20.03418 -19.58713 -19.15468 -17.93957 -17.77717 -17.43392 -16.77412 -16.69345 -16.12763 -15.84353 -15.63613 -15.51144 -15.45220 -15.05611 -14.53860 -14.39871 -14.11686 -14.05916 -13.63143 -13.58183 -13.25984 -13.13782 -12.69308 -12.45842 -12.12144 -12.03125 -11.92370 -11.83532 -11.66250 -11.58404 -11.40830 -11.20656 -10.95591 -10.80517 -10.70920 -10.52715 -9.73516 -9.07548 -8.28535 -5.86752 -0.68300 0.48378 1.36401 1.43214 1.47594 1.52289 1.61582 2.06045 2.22510 2.45161 2.48957 3.00855 3.11886 3.56042 3.83924 3.88877 3.92866 3.96539 4.14113 4.22258 4.39146 4.54937 4.59190 4.65288 4.79733 4.83228 4.89383 4.91352 4.95110 4.99261 5.09878 5.18966 5.26514 5.28803 5.39106 5.40262 5.45907 5.65340 5.66409 5.75824 5.85190 6.11724 6.27299 6.61076 7.08963 7.09253 7.43390 8.00497 8.49267 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.003783 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.378788 B = 7400.478380 C = 8425.902154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.002 3.998 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.262 1.262 6 H -0.276 1.276 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.424 5.424 10 C 0.439 3.561 11 O -0.651 6.651 12 C -0.162 4.162 13 C -0.055 4.055 14 C 0.046 3.954 15 C -0.189 4.189 16 C -0.114 4.114 17 C -0.103 4.103 18 C 0.613 3.387 19 N -0.822 5.822 20 O -0.561 6.561 21 O -0.156 6.156 22 C 0.081 3.919 23 C -0.149 4.149 24 C -0.107 4.107 25 C -0.114 4.114 26 C -0.130 4.130 27 H 0.282 0.718 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.417 0.583 33 H 0.421 0.579 34 H 0.166 0.834 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 -10.084 3.607 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.200 4.200 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.186 1.186 6 H -0.201 1.201 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.137 5.137 10 C 0.234 3.766 11 O -0.543 6.543 12 C -0.182 4.182 13 C -0.077 4.077 14 C -0.006 4.006 15 C -0.208 4.208 16 C -0.134 4.134 17 C -0.156 4.156 18 C 0.398 3.602 19 N -0.386 5.386 20 O -0.442 6.442 21 O -0.052 6.052 22 C -0.022 4.022 23 C -0.187 4.187 24 C -0.145 4.145 25 C -0.151 4.151 26 C -0.168 4.168 27 H 0.094 0.906 28 H 0.174 0.826 29 H 0.171 0.829 30 H 0.203 0.797 31 H 0.196 0.804 32 H 0.248 0.752 33 H 0.254 0.746 34 H 0.181 0.819 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.697 -10.356 3.559 13.983 hybrid contribution 0.601 1.174 -0.261 1.344 sum -8.096 -9.182 3.298 12.678 Atomic orbital electron populations 1.69331 1.06518 1.28535 1.45005 1.26001 0.96326 1.02067 0.95650 0.85035 0.78218 0.76523 0.78877 1.19868 1.18589 1.20146 1.19826 0.98385 0.86603 1.41133 0.90355 1.43942 1.13683 1.05782 1.50279 1.17293 0.87600 0.85402 0.86351 1.90596 1.15837 1.88292 1.59579 1.22969 1.02301 0.92533 1.00408 1.21435 0.99019 0.87275 0.99941 1.21306 0.79706 0.95555 1.04054 1.22492 1.02042 0.89633 1.06649 1.22334 0.89789 1.01893 0.99400 1.22520 0.96175 0.81236 1.15651 1.16520 0.82488 0.85410 0.75773 1.43565 1.08779 1.11580 1.74654 1.90890 1.85137 1.15357 1.52769 1.84033 1.23870 1.27092 1.70245 1.23994 0.79987 1.07226 0.91031 1.23276 0.98702 0.99330 0.97395 1.22206 0.93420 1.01793 0.97108 1.22096 0.98829 1.00196 0.94010 1.22619 0.97552 0.98152 0.98500 0.90640 0.82597 0.82928 0.79744 0.80394 0.75172 0.74581 0.81876 0.92996 0.92311 0.90914 0.89826 0.90541 0.89926 0.93311 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.48 9.86 21.72 0.21 -40.26 16 2 C 0.00 0.08 5.21 85.03 0.44 0.52 16 3 Si 0.99 39.79 29.60 68.60 2.03 41.82 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 6 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.33 -18.27 9.49 84.21 0.80 -17.47 16 8 H 0.08 4.67 7.32 -2.91 -0.02 4.65 16 9 N -0.42 -21.62 2.65 -616.72 -1.64 -23.26 16 10 C 0.44 22.11 6.65 85.12 0.57 22.68 16 11 O -0.65 -37.48 15.82 -4.65 -0.07 -37.55 16 12 C -0.16 -6.38 5.78 22.52 0.13 -6.25 16 13 C -0.06 -1.88 9.60 23.69 0.23 -1.65 16 14 C 0.05 1.29 7.02 24.32 0.17 1.46 16 15 C -0.19 -4.38 10.88 22.62 0.25 -4.13 16 16 C -0.11 -2.58 10.63 22.52 0.24 -2.35 16 17 C -0.10 -2.52 7.16 24.44 0.17 -2.35 16 18 C 0.61 14.03 8.07 86.51 0.70 14.73 16 19 N -0.82 -12.10 8.87 -176.23 -1.56 -13.66 16 20 O -0.56 -16.10 17.70 -4.24 -0.07 -16.17 16 21 O -0.16 -4.12 10.01 -9.80 -0.10 -4.22 16 22 C 0.08 3.43 2.55 46.19 0.12 3.54 16 23 C -0.15 -5.30 5.95 32.01 0.19 -5.11 16 24 C -0.11 -2.80 6.82 31.67 0.22 -2.58 16 25 C -0.11 -2.89 6.24 31.32 0.20 -2.70 16 26 C -0.13 -4.71 5.64 31.32 0.18 -4.54 16 27 H 0.28 12.27 8.31 -92.71 -0.77 11.50 16 28 H 0.16 5.52 3.00 -2.91 -0.01 5.51 16 29 H 0.15 5.33 7.48 -2.91 -0.02 5.31 16 30 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.42 4.99 8.58 -92.70 -0.80 4.20 16 33 H 0.42 4.35 8.93 -92.71 -0.83 3.53 16 34 H 0.17 7.65 4.26 -54.60 -0.23 7.42 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.16 5.19 -2.39 -0.01 2.15 16 37 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.62 7.80 -2.39 -0.02 1.60 16 40 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.05 1.86 5.34 -2.38 -0.01 1.85 16 42 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -68.44 346.53 2.65 -65.80 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.74 Total: 33.69 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 4.59 Total: -6.18 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.98 Total: -77.19 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -0.25 Total: -57.94 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -68.44 2.65 -65.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.528 kcal (2) G-P(sol) polarization free energy of solvation -68.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds