Wall clock time and date at job start Tue Mar 31 2020 12:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31231 * 1 3 3 Si 1.86805 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47225 * 240.00034 * 3 2 1 5 5 H 1.48494 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46858 * 120.00323 * 3 2 1 7 7 C 1.39266 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00087 * 144.36141 * 7 2 1 9 9 N 1.36508 * 120.00151 * 324.35805 * 7 2 1 10 10 C 1.34769 * 120.00366 * 176.38023 * 9 7 2 11 11 O 1.21793 * 120.00001 * 1.99484 * 10 9 7 12 12 C 1.41810 * 120.00246 * 181.99308 * 10 9 7 13 13 C 1.35501 * 120.00216 * 188.86141 * 12 10 9 14 14 C 1.46164 * 120.00013 * 28.54060 * 13 12 10 15 15 C 1.38222 * 125.82844 * 186.81363 * 14 13 12 16 16 C 1.39718 * 106.84496 * 179.84923 * 15 14 13 17 17 C 1.37802 * 106.91427 * 0.41076 * 16 15 14 18 18 C 1.46909 * 125.76541 * 179.74060 * 17 16 15 19 19 N 1.34772 * 119.99793 * 180.02562 * 18 17 16 20 20 O 1.21668 * 120.00061 * 0.02741 * 18 17 16 21 21 O 1.34603 * 125.82852 * 7.12599 * 14 13 12 22 22 C 1.46503 * 119.99598 * 356.38322 * 9 7 2 23 23 C 1.55238 * 110.57961 * 227.13163 * 22 9 7 24 24 C 1.54883 * 102.59045 * 203.33772 * 23 22 9 25 25 C 1.54269 * 104.31222 * 37.93703 * 24 23 22 26 26 C 1.53883 * 106.59514 * 336.32045 * 25 24 23 27 27 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00007 * 8.85531 * 12 10 9 29 29 H 1.08001 * 120.00050 * 208.54584 * 13 12 10 30 30 H 1.07994 * 126.57948 * 0.02562 * 15 14 13 31 31 H 1.07999 * 126.53783 * 180.11744 * 16 15 14 32 32 H 0.97000 * 120.00428 * 359.97438 * 19 18 17 33 33 H 0.97005 * 120.00485 * 180.02562 * 19 18 17 34 34 H 1.08999 * 110.43739 * 349.72132 * 22 9 7 35 35 H 1.09007 * 110.89564 * 85.05299 * 23 22 9 36 36 H 1.08998 * 110.76816 * 321.57333 * 23 22 9 37 37 H 1.09001 * 110.48889 * 279.19624 * 24 23 22 38 38 H 1.08998 * 110.48899 * 156.67861 * 24 23 22 39 39 H 1.08997 * 110.03674 * 95.60215 * 25 24 23 40 40 H 1.09005 * 110.03627 * 216.99294 * 25 24 23 41 41 H 1.09006 * 110.02721 * 119.28879 * 26 25 24 42 42 H 1.08997 * 110.03381 * 240.66696 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 3.1000 1.6965 -1.2125 5 1 1.2813 2.7464 0.0006 6 1 3.1001 1.6964 1.2126 7 6 2.0087 -1.2061 -0.0005 8 1 2.9369 -1.2934 -0.5455 9 7 1.5180 -2.2779 0.6879 10 6 2.1528 -3.4652 0.6282 11 8 3.1843 -3.5728 -0.0105 12 6 1.6199 -4.5892 1.3090 13 6 2.3432 -5.7314 1.4006 14 6 3.8037 -5.6741 1.3936 15 6 4.6558 -6.7615 1.3472 16 6 5.9582 -6.2558 1.3546 17 6 5.8549 -4.8829 1.4146 18 6 6.9792 -3.9379 1.4482 19 7 6.7437 -2.6123 1.5075 20 8 8.1230 -4.3520 1.4225 21 8 4.5485 -4.5538 1.4373 22 6 0.3012 -2.1374 1.4915 23 6 0.5008 -2.7636 2.8979 24 6 -0.9512 -3.0739 3.3386 25 6 -1.6481 -3.5501 2.0472 26 6 -0.8518 -2.9546 0.8728 27 1 -0.4850 0.8400 0.0004 28 1 0.6376 -4.5349 1.7546 29 1 1.8405 -6.6841 1.4787 30 1 4.3698 -7.8021 1.3092 31 1 6.8716 -6.8313 1.3244 32 1 5.8318 -2.2821 1.5277 33 1 7.4860 -1.9882 1.5294 34 1 0.0211 -1.0876 1.5779 35 1 0.9669 -2.0507 3.5783 36 1 1.0890 -3.6790 2.8335 37 1 -1.4336 -2.1752 3.7231 38 1 -0.9614 -3.8628 4.0906 39 1 -1.6333 -4.6387 1.9945 40 1 -2.6764 -3.1893 2.0230 41 1 -0.4505 -3.7543 0.2502 42 1 -1.4935 -2.3049 0.2779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828319453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:18 Heat of formation + Delta-G solvation = -7.285605 kcal Electronic energy + Delta-G solvation = -27762.672044 eV Core-core repulsion = 23904.177391 eV Total energy + Delta-G solvation = -3858.494653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87552 -39.72429 -38.76347 -36.72599 -34.69112 -33.54450 -32.76336 -32.26391 -31.87064 -28.79514 -28.17235 -27.25489 -25.51249 -23.86100 -21.90699 -21.12300 -20.26691 -19.99603 -19.70997 -18.47685 -17.75032 -17.54088 -16.56822 -16.15690 -15.65284 -15.49089 -14.94457 -14.40574 -14.27272 -14.01514 -13.87365 -13.66066 -13.60095 -13.04533 -12.91783 -12.66478 -12.54971 -12.30168 -12.10950 -11.73848 -11.52480 -11.10484 -10.94273 -10.81889 -10.65297 -10.59421 -10.24519 -10.15794 -10.05578 -9.86792 -9.59708 -9.50582 -9.25055 -8.96172 -8.40512 -8.00821 -7.35185 -6.83548 -3.86974 0.83696 1.96864 2.98047 3.07451 3.10178 3.21609 3.23689 3.58251 3.87043 3.93541 4.16011 4.69601 4.78908 5.08466 5.11813 5.26046 5.30089 5.33508 5.39002 5.63904 5.84283 5.86305 5.99773 6.02289 6.07045 6.11016 6.15223 6.18956 6.27404 6.34393 6.45223 6.53248 6.56439 6.64702 6.72804 6.93764 6.94286 6.96027 7.12714 7.25314 7.39803 7.75512 7.87941 8.22595 8.43841 8.94653 9.18078 9.93091 10.17060 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005618 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.464011 B = 4982.577137 C = 6806.100906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.294 4.294 8 H 0.115 0.885 9 N -0.401 5.401 10 C 0.433 3.567 11 O -0.587 6.587 12 C -0.152 4.152 13 C -0.108 4.108 14 C 0.095 3.905 15 C -0.238 4.238 16 C -0.123 4.123 17 C -0.104 4.104 18 C 0.615 3.385 19 N -0.841 5.841 20 O -0.545 6.545 21 O -0.103 6.103 22 C 0.125 3.875 23 C -0.167 4.167 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.128 4.128 27 H 0.277 0.723 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.414 0.586 33 H 0.403 0.597 34 H 0.134 0.866 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -4.853 6.706 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.172 4.172 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.422 4.422 8 H 0.133 0.867 9 N -0.115 5.115 10 C 0.229 3.771 11 O -0.475 6.475 12 C -0.173 4.173 13 C -0.131 4.131 14 C 0.041 3.959 15 C -0.258 4.258 16 C -0.144 4.144 17 C -0.158 4.158 18 C 0.401 3.599 19 N -0.404 5.404 20 O -0.425 6.425 21 O 0.005 5.995 22 C 0.020 3.980 23 C -0.205 4.205 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.166 4.166 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.244 0.756 33 H 0.234 0.766 34 H 0.151 0.849 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.600 -4.767 6.347 8.098 hybrid contribution -0.134 1.096 -0.107 1.110 sum -1.735 -3.671 6.240 7.445 Atomic orbital electron populations 1.70016 1.06668 1.28960 1.40336 1.25378 0.95000 1.00389 0.96394 0.86177 0.79954 0.80251 0.79786 1.19289 1.20690 1.19476 1.19887 1.06664 0.87096 1.28533 0.86721 1.43987 1.21414 1.08314 1.37748 1.16727 0.88702 0.83003 0.88703 1.90701 1.25324 1.83313 1.48195 1.23160 1.02840 0.95218 0.96083 1.21100 0.86879 0.98309 1.06791 1.21247 0.92125 0.83059 0.99500 1.21940 0.91909 0.99114 1.12802 1.21827 0.98445 0.92358 1.01751 1.22132 0.82954 0.94441 1.16287 1.16606 0.86109 0.81856 0.75301 1.43723 1.13330 1.06817 1.76488 1.90837 1.20733 1.78548 1.52426 1.84475 1.14745 1.32903 1.67426 1.22588 0.84311 1.03747 0.87306 1.23809 0.96819 1.01745 0.98118 1.22260 0.95782 1.00664 0.97123 1.22158 0.99233 0.99762 0.95171 1.22555 0.97820 0.99140 0.97120 0.91231 0.83751 0.83563 0.83245 0.83149 0.75582 0.76650 0.84886 0.91868 0.89262 0.91752 0.92105 0.92376 0.92153 0.92249 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -18.93 10.83 55.51 0.60 -18.33 16 2 C 0.04 0.85 4.76 -17.43 -0.08 0.77 16 3 Si 0.91 18.23 29.67 -169.99 -5.04 13.19 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.29 -7.34 9.37 -15.09 -0.14 -7.48 16 8 H 0.12 3.06 7.35 -52.49 -0.39 2.68 16 9 N -0.40 -9.24 2.65 -108.94 -0.29 -9.53 16 10 C 0.43 9.93 6.33 -14.90 -0.09 9.83 16 11 O -0.59 -15.24 12.60 -19.54 -0.25 -15.49 16 12 C -0.15 -2.80 6.08 -39.19 -0.24 -3.04 16 13 C -0.11 -1.81 9.99 -37.38 -0.37 -2.19 16 14 C 0.10 1.78 6.22 -36.41 -0.23 1.56 16 15 C -0.24 -3.89 10.88 -39.03 -0.42 -4.32 16 16 C -0.12 -2.13 10.63 -39.19 -0.42 -2.55 16 17 C -0.10 -2.01 7.16 -36.23 -0.26 -2.27 16 18 C 0.61 11.40 8.07 -12.75 -0.10 11.30 16 19 N -0.84 -13.04 8.87 30.31 0.27 -12.77 16 20 O -0.55 -11.06 17.70 5.22 0.09 -10.96 16 21 O -0.10 -2.14 7.10 -20.98 -0.15 -2.29 16 22 C 0.13 2.47 2.43 -66.08 -0.16 2.31 16 23 C -0.17 -2.74 5.79 -24.55 -0.14 -2.88 16 24 C -0.12 -1.60 6.78 -25.07 -0.17 -1.77 16 25 C -0.13 -1.71 6.16 -25.61 -0.16 -1.87 16 26 C -0.13 -2.26 5.69 -25.61 -0.15 -2.41 16 27 H 0.28 5.97 8.30 -40.82 -0.34 5.63 16 28 H 0.15 2.33 3.39 -52.49 -0.18 2.16 16 29 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.41 6.63 8.58 -40.82 -0.35 6.28 16 33 H 0.40 5.09 8.93 -40.82 -0.36 4.73 16 34 H 0.13 2.88 5.07 -51.93 -0.26 2.62 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.47 3.94 -51.93 -0.20 1.27 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.70 8.04 -51.93 -0.42 0.29 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.11 6.43 -51.93 -0.33 0.77 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -29.57 342.00 -7.76 -37.34 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -5.01 Total: 18.71 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.14 Total: -5.01 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.58 Total: -40.63 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.30 Total: -28.75 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.04 Total: 13.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.57 -7.76 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.050 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds