Wall clock time and date at job start Tue Mar 31 2020 12:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31231 * 1 3 3 Si 1.86805 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47225 * 240.00034 * 3 2 1 5 5 H 1.48494 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46858 * 120.00323 * 3 2 1 7 7 C 1.39266 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00087 * 144.36141 * 7 2 1 9 9 N 1.36508 * 120.00151 * 324.35805 * 7 2 1 10 10 C 1.34769 * 120.00366 * 176.38023 * 9 7 2 11 11 O 1.21793 * 120.00001 * 1.99484 * 10 9 7 12 12 C 1.41810 * 120.00246 * 181.99308 * 10 9 7 13 13 C 1.35501 * 120.00216 * 188.86141 * 12 10 9 14 14 C 1.46164 * 120.00013 * 28.54060 * 13 12 10 15 15 C 1.38222 * 125.82844 * 186.81363 * 14 13 12 16 16 C 1.39718 * 106.84496 * 179.84923 * 15 14 13 17 17 C 1.37802 * 106.91427 * 0.41076 * 16 15 14 18 18 C 1.46909 * 125.76541 * 179.74060 * 17 16 15 19 19 N 1.34772 * 119.99793 * 180.02562 * 18 17 16 20 20 O 1.21668 * 120.00061 * 0.02741 * 18 17 16 21 21 O 1.34603 * 125.82852 * 7.12599 * 14 13 12 22 22 C 1.46503 * 119.99598 * 356.38322 * 9 7 2 23 23 C 1.55238 * 110.57961 * 227.13163 * 22 9 7 24 24 C 1.54883 * 102.59045 * 203.33772 * 23 22 9 25 25 C 1.54269 * 104.31222 * 37.93703 * 24 23 22 26 26 C 1.53883 * 106.59514 * 336.32045 * 25 24 23 27 27 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00007 * 8.85531 * 12 10 9 29 29 H 1.08001 * 120.00050 * 208.54584 * 13 12 10 30 30 H 1.07994 * 126.57948 * 0.02562 * 15 14 13 31 31 H 1.07999 * 126.53783 * 180.11744 * 16 15 14 32 32 H 0.97000 * 120.00428 * 359.97438 * 19 18 17 33 33 H 0.97005 * 120.00485 * 180.02562 * 19 18 17 34 34 H 1.08999 * 110.43739 * 349.72132 * 22 9 7 35 35 H 1.09007 * 110.89564 * 85.05299 * 23 22 9 36 36 H 1.08998 * 110.76816 * 321.57333 * 23 22 9 37 37 H 1.09001 * 110.48889 * 279.19624 * 24 23 22 38 38 H 1.08998 * 110.48899 * 156.67861 * 24 23 22 39 39 H 1.08997 * 110.03674 * 95.60215 * 25 24 23 40 40 H 1.09005 * 110.03627 * 216.99294 * 25 24 23 41 41 H 1.09006 * 110.02721 * 119.28879 * 26 25 24 42 42 H 1.08997 * 110.03381 * 240.66696 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 3.1000 1.6965 -1.2125 5 1 1.2813 2.7464 0.0006 6 1 3.1001 1.6964 1.2126 7 6 2.0087 -1.2061 -0.0005 8 1 2.9369 -1.2934 -0.5455 9 7 1.5180 -2.2779 0.6879 10 6 2.1528 -3.4652 0.6282 11 8 3.1843 -3.5728 -0.0105 12 6 1.6199 -4.5892 1.3090 13 6 2.3432 -5.7314 1.4006 14 6 3.8037 -5.6741 1.3936 15 6 4.6558 -6.7615 1.3472 16 6 5.9582 -6.2558 1.3546 17 6 5.8549 -4.8829 1.4146 18 6 6.9792 -3.9379 1.4482 19 7 6.7437 -2.6123 1.5075 20 8 8.1230 -4.3520 1.4225 21 8 4.5485 -4.5538 1.4373 22 6 0.3012 -2.1374 1.4915 23 6 0.5008 -2.7636 2.8979 24 6 -0.9512 -3.0739 3.3386 25 6 -1.6481 -3.5501 2.0472 26 6 -0.8518 -2.9546 0.8728 27 1 -0.4850 0.8400 0.0004 28 1 0.6376 -4.5349 1.7546 29 1 1.8405 -6.6841 1.4787 30 1 4.3698 -7.8021 1.3092 31 1 6.8716 -6.8313 1.3244 32 1 5.8318 -2.2821 1.5277 33 1 7.4860 -1.9882 1.5294 34 1 0.0211 -1.0876 1.5779 35 1 0.9669 -2.0507 3.5783 36 1 1.0890 -3.6790 2.8335 37 1 -1.4336 -2.1752 3.7231 38 1 -0.9614 -3.8628 4.0906 39 1 -1.6333 -4.6387 1.9945 40 1 -2.6764 -3.1893 2.0230 41 1 -0.4505 -3.7543 0.2502 42 1 -1.4935 -2.3049 0.2779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828319453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:17 Heat of formation + Delta-G solvation = -26.107817 kcal Electronic energy + Delta-G solvation = -27763.488236 eV Core-core repulsion = 23904.177391 eV Total energy + Delta-G solvation = -3859.310846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31504 -41.25745 -40.23836 -38.24975 -36.25845 -34.96338 -34.24473 -33.69959 -33.54725 -30.23389 -29.44427 -28.65500 -27.09872 -25.38347 -23.35850 -22.53819 -21.69439 -21.24287 -21.10985 -19.95909 -19.23430 -19.10417 -17.97280 -17.69808 -17.16309 -16.97942 -16.50866 -15.87093 -15.74229 -15.48889 -15.32414 -15.23048 -15.04926 -14.42309 -14.23441 -14.07190 -13.94308 -13.72720 -13.66767 -13.18658 -13.13206 -12.62318 -12.40203 -12.17379 -12.03740 -11.88658 -11.80179 -11.65065 -11.35570 -11.20468 -10.98031 -10.91555 -10.66161 -10.57600 -10.20314 -9.69411 -8.80683 -8.52631 -5.72305 -0.57083 0.56763 1.34465 1.41300 1.49072 1.78916 1.85626 2.12900 2.22944 2.48259 2.58600 3.13347 3.18216 3.71085 3.89969 3.94603 3.98701 4.04705 4.12705 4.33811 4.54606 4.61973 4.69132 4.73471 4.81751 4.82832 4.88414 4.94894 5.00739 5.09214 5.17295 5.22193 5.29507 5.32029 5.43059 5.48132 5.61058 5.62304 5.65753 5.68707 5.99087 6.10337 6.34673 6.50737 7.05300 7.20582 7.52056 8.21519 8.46214 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005618 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.464011 B = 4982.577137 C = 6806.100906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.016 3.984 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.346 4.346 8 H 0.078 0.922 9 N -0.419 5.419 10 C 0.432 3.568 11 O -0.628 6.628 12 C -0.181 4.181 13 C -0.064 4.064 14 C 0.050 3.950 15 C -0.207 4.207 16 C -0.125 4.125 17 C -0.128 4.128 18 C 0.610 3.390 19 N -0.827 5.827 20 O -0.567 6.567 21 O -0.129 6.129 22 C 0.118 3.882 23 C -0.164 4.164 24 C -0.110 4.110 25 C -0.116 4.116 26 C -0.123 4.123 27 H 0.280 0.720 28 H 0.172 0.828 29 H 0.203 0.797 30 H 0.195 0.805 31 H 0.171 0.829 32 H 0.412 0.588 33 H 0.416 0.584 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -7.691 8.539 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.473 4.473 8 H 0.096 0.904 9 N -0.133 5.133 10 C 0.227 3.773 11 O -0.519 6.519 12 C -0.201 4.201 13 C -0.085 4.085 14 C -0.003 4.003 15 C -0.226 4.226 16 C -0.146 4.146 17 C -0.182 4.182 18 C 0.396 3.604 19 N -0.389 5.389 20 O -0.450 6.450 21 O -0.022 6.022 22 C 0.014 3.986 23 C -0.201 4.201 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.162 4.162 27 H 0.091 0.909 28 H 0.189 0.811 29 H 0.220 0.780 30 H 0.212 0.788 31 H 0.188 0.812 32 H 0.242 0.758 33 H 0.249 0.751 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.652 -7.585 8.199 11.480 hybrid contribution 0.378 1.692 -0.672 1.860 sum -2.274 -5.893 7.527 9.826 Atomic orbital electron populations 1.70062 1.07123 1.29471 1.41016 1.25840 0.95586 1.01893 0.95782 0.85419 0.78913 0.77659 0.79056 1.20267 1.19373 1.19487 1.19550 1.06740 0.89457 1.31588 0.90399 1.44007 1.22715 1.08008 1.38551 1.17449 0.87682 0.83930 0.88194 1.90656 1.26956 1.84393 1.49848 1.23105 1.04388 0.93977 0.98609 1.21962 0.85997 0.99792 1.00755 1.22000 0.93472 0.83408 1.01453 1.22468 0.90600 1.00511 1.08985 1.22248 0.99978 0.91666 1.00702 1.22513 0.82862 0.95728 1.17123 1.16712 0.85854 0.82539 0.75264 1.43623 1.13755 1.06376 1.75143 1.90814 1.21319 1.78994 1.53837 1.84457 1.15388 1.34443 1.67899 1.22639 0.83842 1.03105 0.88980 1.23739 0.99247 1.01314 0.95792 1.22256 0.92987 1.01983 0.97571 1.22134 0.99109 1.01078 0.93092 1.22452 0.97178 0.98134 0.98399 0.90913 0.81138 0.77985 0.78803 0.81154 0.75788 0.75089 0.87378 0.92590 0.88999 0.91397 0.88844 0.89782 0.90777 0.93495 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.56 10.83 21.72 0.24 -40.33 16 2 C 0.02 0.77 4.76 85.03 0.40 1.18 16 3 Si 0.97 39.36 29.67 68.60 2.04 41.40 16 4 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.35 -18.58 9.37 84.21 0.79 -17.79 16 8 H 0.08 4.60 7.35 -2.91 -0.02 4.58 16 9 N -0.42 -20.28 2.65 -616.74 -1.63 -21.91 16 10 C 0.43 20.33 6.33 85.13 0.54 20.87 16 11 O -0.63 -33.97 12.60 18.92 0.24 -33.73 16 12 C -0.18 -6.34 6.08 22.52 0.14 -6.20 16 13 C -0.06 -1.89 9.99 23.70 0.24 -1.65 16 14 C 0.05 1.75 6.22 24.33 0.15 1.90 16 15 C -0.21 -5.90 10.88 22.62 0.25 -5.66 16 16 C -0.13 -4.04 10.63 22.52 0.24 -3.80 16 17 C -0.13 -4.91 7.16 24.44 0.17 -4.74 16 18 C 0.61 22.80 8.07 86.51 0.70 23.49 16 19 N -0.83 -26.34 8.87 -176.24 -1.56 -27.90 16 20 O -0.57 -22.97 17.70 -4.25 -0.08 -23.04 16 21 O -0.13 -5.32 7.10 13.76 0.10 -5.22 16 22 C 0.12 4.78 2.43 46.19 0.11 4.90 16 23 C -0.16 -5.18 5.79 32.01 0.19 -5.00 16 24 C -0.11 -2.57 6.78 31.67 0.21 -2.36 16 25 C -0.12 -2.83 6.16 31.32 0.19 -2.63 16 26 C -0.12 -4.35 5.69 31.32 0.18 -4.17 16 27 H 0.28 12.55 8.30 -92.71 -0.77 11.78 16 28 H 0.17 5.04 3.39 -2.91 -0.01 5.03 16 29 H 0.20 3.64 8.06 -2.91 -0.02 3.61 16 30 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.41 13.91 8.58 -92.71 -0.80 13.12 16 33 H 0.42 10.72 8.93 -92.70 -0.83 9.89 16 34 H 0.11 4.91 5.07 -2.39 -0.01 4.90 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 2.87 3.94 -2.39 -0.01 2.86 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 40 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.05 1.74 6.43 -2.38 -0.02 1.73 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -70.25 342.00 3.31 -66.94 By element: Atomic # 1 Polarization: 45.99 SS G_CDS: -0.53 Total: 45.46 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.50 Total: -1.67 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -2.96 Total: -90.14 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: 0.26 Total: -61.99 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.04 Total: 41.40 kcal Total: -70.25 3.31 -66.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828319453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.835 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds