Wall clock time and date at job start Tue Mar 31 2020 12:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00386 * 2 1 4 4 H 1.48494 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47029 * 300.00218 * 3 2 1 6 6 H 1.48500 * 109.47026 * 60.00052 * 3 2 1 7 7 C 1.37878 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99667 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.46176 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31700 * 181.36994 * 10 9 7 12 12 N 1.46917 * 108.77721 * 305.37030 * 11 10 9 13 13 C 1.34776 * 120.63330 * 233.58483 * 12 11 10 14 14 O 1.21713 * 119.99576 * 5.22910 * 13 12 11 15 15 C 1.46367 * 120.00601 * 185.23473 * 13 12 11 16 16 C 1.35254 * 120.00444 * 175.01190 * 15 13 12 17 17 C 1.46332 * 119.99842 * 179.71965 * 16 15 13 18 18 C 1.38087 * 125.81745 * 179.97438 * 17 16 15 19 19 C 1.39808 * 106.83575 * 179.88585 * 18 17 16 20 20 C 1.37721 * 106.89390 * 0.38196 * 19 18 17 21 21 C 1.47012 * 125.76804 * 179.80137 * 20 19 18 22 22 N 1.34777 * 119.99582 * 179.97438 * 21 20 19 23 23 O 1.21646 * 119.99861 * 359.97438 * 21 20 19 24 24 O 1.34571 * 125.82629 * 0.30775 * 17 16 15 25 25 C 1.46934 * 118.73971 * 53.85359 * 12 11 10 26 26 C 1.53042 * 109.45242 * 300.06315 * 9 7 2 27 27 H 0.96999 * 120.00053 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46321 * 60.03096 * 9 7 2 29 29 H 1.09003 * 109.49459 * 61.42010 * 10 9 7 30 30 H 1.09004 * 109.49807 * 301.32604 * 10 9 7 31 31 H 1.09001 * 109.58779 * 185.57464 * 11 10 9 32 32 H 1.09001 * 109.69773 * 65.22576 * 11 10 9 33 33 H 1.08004 * 119.99751 * 355.01669 * 15 13 12 34 34 H 1.07994 * 119.99811 * 0.02562 * 16 15 13 35 35 H 1.08001 * 126.58576 * 0.03046 * 18 17 16 36 36 H 1.07999 * 126.55270 * 180.14279 * 19 18 17 37 37 H 0.96998 * 120.00327 * 359.97438 * 22 21 20 38 38 H 0.97000 * 119.99321 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.58062 * 65.93441 * 25 12 11 40 40 H 1.08999 * 109.58222 * 186.35308 * 25 12 11 41 41 H 1.08999 * 109.49447 * 298.57390 * 26 9 7 42 42 H 1.08994 * 109.49369 * 58.66942 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6622 -0.0018 11 6 1.4765 -4.9866 -0.0364 12 7 0.5231 -5.0092 1.0812 13 6 0.5129 -6.0356 1.9546 14 8 1.3589 -6.9075 1.8788 15 6 -0.5154 -6.1021 2.9940 16 6 -0.5875 -7.1813 3.8061 17 6 -1.6117 -7.2449 4.8492 18 6 -1.7941 -8.2838 5.7404 19 6 -2.8735 -7.9324 6.5566 20 6 -3.3140 -6.6996 6.1289 21 6 -4.4379 -5.9432 6.6997 22 7 -4.7700 -4.7412 6.1883 23 8 -5.0682 -6.4023 7.6334 24 8 -2.5405 -6.3038 5.0996 25 6 -0.4231 -3.8943 1.2253 26 6 0.3705 -2.5793 1.2487 27 1 -0.4850 0.8400 0.0004 28 1 0.6244 -2.5567 -0.8906 29 1 2.8563 -3.6196 0.9001 30 1 2.8874 -3.5911 -0.8800 31 1 2.1751 -5.8175 0.0623 32 1 0.9364 -5.0734 -0.9792 33 1 -1.2167 -5.2893 3.1126 34 1 0.1140 -7.9939 3.6878 35 1 -1.2130 -9.1923 5.7977 36 1 -3.2857 -8.5177 7.3652 37 1 -4.2672 -4.3751 5.4440 38 1 -5.5114 -4.2420 6.5652 39 1 -1.1152 -3.8914 0.3832 40 1 -0.9783 -4.0045 2.1568 41 1 0.9985 -2.5467 2.1390 42 1 -0.3219 -1.7376 1.2603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831940611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:12 Heat of formation + Delta-G solvation = -48.591792 kcal Electronic energy + Delta-G solvation = -25662.293633 eV Core-core repulsion = 21802.007809 eV Total energy + Delta-G solvation = -3860.285824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.90718 -39.81337 -39.49553 -36.97368 -34.42300 -33.91289 -33.59600 -33.31203 -31.40015 -30.22984 -29.33356 -26.51563 -25.02031 -23.24483 -22.59341 -22.16301 -21.56406 -20.57769 -19.53222 -18.72118 -18.21993 -17.46529 -17.24544 -16.72533 -16.34222 -15.79052 -15.49373 -14.84209 -14.73362 -14.67081 -14.53138 -13.86148 -13.47770 -13.43889 -13.26208 -13.00622 -12.89350 -12.74352 -12.42407 -12.17996 -11.60129 -11.36733 -11.01365 -10.84934 -10.83074 -10.66748 -10.45757 -10.26878 -10.20029 -10.16185 -9.83151 -9.56386 -9.24298 -8.99825 -8.47840 -8.42398 -8.05919 -6.09826 -4.15660 0.10637 1.26105 2.17977 2.32360 2.79787 3.11565 3.22894 3.31555 3.32112 3.35947 3.43517 4.21776 4.35824 4.49235 4.55366 4.82068 4.94593 5.19789 5.22841 5.29350 5.49385 5.54917 5.68466 5.71527 5.82398 5.97086 6.01291 6.06487 6.09377 6.18688 6.26170 6.36574 6.49956 6.57232 6.80957 6.90804 6.95644 7.05222 7.18965 7.59137 7.72244 7.78538 7.84159 7.96242 8.33316 8.38179 8.87993 9.49892 10.95774 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002866 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.136481 B = 9765.786781 C =11445.382152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.590 5.590 13 C 0.539 3.461 14 O -0.558 6.558 15 C -0.164 4.164 16 C -0.027 4.027 17 C 0.047 3.953 18 C -0.191 4.191 19 C -0.114 4.114 20 C -0.083 4.083 21 C 0.611 3.389 22 N -0.842 5.842 23 O -0.525 6.525 24 O -0.153 6.153 25 C 0.099 3.901 26 C -0.124 4.124 27 H 0.260 0.740 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -12.229 9.002 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.320 5.320 13 C 0.328 3.672 14 O -0.440 6.440 15 C -0.185 4.185 16 C -0.046 4.046 17 C -0.005 4.005 18 C -0.210 4.210 19 C -0.135 4.135 20 C -0.136 4.136 21 C 0.396 3.604 22 N -0.405 5.405 23 O -0.403 6.403 24 O -0.049 6.049 25 C -0.023 4.023 26 C -0.162 4.162 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.239 0.761 38 H 0.242 0.758 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.694 -12.657 9.355 17.519 hybrid contribution 0.330 1.432 -0.165 1.478 sum -7.364 -11.226 9.190 16.270 Atomic orbital electron populations 1.69831 1.05850 1.26397 1.51042 1.24956 0.94883 0.99094 0.95037 0.86558 0.80221 0.83787 0.77582 1.19820 1.21034 1.21045 1.21239 0.93020 0.90509 1.50153 0.92612 1.18649 0.92669 0.91813 0.93959 1.22015 0.98944 0.94073 1.01147 1.21749 0.91774 0.99988 0.87611 1.48163 1.35614 1.20688 1.27564 1.18127 0.84971 0.82036 0.82031 1.90771 1.39635 1.39781 1.73790 1.23458 0.99473 0.99266 0.96268 1.21542 0.93419 0.99514 0.90164 1.21345 0.91926 0.88356 0.98835 1.22232 1.00697 1.00730 0.97309 1.22106 0.96255 0.94470 1.00657 1.22352 0.98570 0.98275 0.94366 1.16559 0.81060 0.80856 0.81900 1.43715 1.37707 1.20444 1.38611 1.90918 1.52159 1.69211 1.27982 1.84047 1.35987 1.42322 1.42499 1.22270 0.91652 0.87518 1.00858 1.22114 1.00055 0.94376 0.99703 0.93017 0.95391 0.92854 0.91998 0.90147 0.91944 0.84459 0.81809 0.81750 0.81775 0.76076 0.75781 0.91633 0.91265 0.94119 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 11.31 55.43 0.63 -23.02 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.21 8.56 -34.44 -0.29 -13.51 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.09 2.06 -91.73 -0.19 0.90 16 10 C -0.12 -2.43 5.30 -26.61 -0.14 -2.58 16 11 C 0.11 1.93 6.44 -3.72 -0.02 1.90 16 12 N -0.59 -10.01 2.97 -174.16 -0.52 -10.53 16 13 C 0.54 8.82 7.61 -12.99 -0.10 8.72 16 14 O -0.56 -10.48 15.66 5.18 0.08 -10.39 16 15 C -0.16 -2.10 8.99 -37.38 -0.34 -2.44 16 16 C -0.03 -0.30 9.64 -37.39 -0.36 -0.66 16 17 C 0.05 0.50 7.02 -36.38 -0.26 0.24 16 18 C -0.19 -1.72 10.88 -39.05 -0.42 -2.14 16 19 C -0.11 -1.10 10.64 -39.18 -0.42 -1.52 16 20 C -0.08 -0.88 7.16 -36.22 -0.26 -1.14 16 21 C 0.61 6.45 8.07 -12.70 -0.10 6.35 16 22 N -0.84 -5.97 8.87 30.34 0.27 -5.70 16 23 O -0.52 -7.08 17.70 5.24 0.09 -6.99 16 24 O -0.15 -1.64 10.01 3.89 0.04 -1.60 16 25 C 0.10 1.64 6.34 -3.49 -0.02 1.62 16 26 C -0.12 -2.59 5.17 -26.39 -0.14 -2.73 16 27 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.14 1.58 5.62 -52.48 -0.29 1.28 16 34 H 0.16 1.70 7.53 -52.49 -0.40 1.30 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.41 2.33 8.58 -40.82 -0.35 1.98 16 38 H 0.41 2.19 8.93 -40.82 -0.36 1.82 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.96 5.37 -51.93 -0.28 0.68 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 2.45 6.03 -51.93 -0.31 2.14 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -31.05 356.64 -7.49 -38.54 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.28 Total: 4.45 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.16 Total: -5.48 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.38 Total: -39.24 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.21 Total: -18.98 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.05 -7.49 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831940611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.052 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds