Wall clock time and date at job start Tue Mar 31 2020 12:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99747 * 2 1 4 4 H 1.48498 * 109.46957 * 269.99912 * 3 2 1 5 5 H 1.48497 * 109.47196 * 29.99581 * 3 2 1 6 6 H 1.48502 * 109.47437 * 149.99796 * 3 2 1 7 7 C 1.37875 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00583 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99657 * 180.02562 * 7 2 1 10 10 C 1.53037 * 109.45790 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.30982 * 181.37097 * 10 9 7 12 12 N 1.46932 * 108.77456 * 305.36017 * 11 10 9 13 13 C 1.34771 * 120.63379 * 233.58236 * 12 11 10 14 14 O 1.21711 * 119.99864 * 354.91776 * 13 12 11 15 15 C 1.46373 * 120.00060 * 174.91024 * 13 12 11 16 16 C 1.35253 * 119.99714 * 194.69240 * 15 13 12 17 17 C 1.46325 * 120.00579 * 23.61257 * 16 15 13 18 18 C 1.38087 * 125.82692 * 187.47952 * 17 16 15 19 19 C 1.39796 * 106.83741 * 179.97438 * 18 17 16 20 20 C 1.37729 * 106.90147 * 359.97438 * 19 18 17 21 21 C 1.46999 * 125.77036 * 180.02562 * 20 19 18 22 22 N 1.34778 * 119.99743 * 180.02562 * 21 20 19 23 23 O 1.21654 * 120.00076 * 0.02562 * 21 20 19 24 24 O 1.34577 * 125.82216 * 7.43717 * 17 16 15 25 25 C 1.46923 * 118.73510 * 53.86538 * 12 11 10 26 26 C 1.53042 * 109.44517 * 300.06204 * 9 7 2 27 27 H 0.96994 * 120.00512 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.45852 * 60.02699 * 9 7 2 29 29 H 1.09001 * 109.49938 * 61.42422 * 10 9 7 30 30 H 1.09000 * 109.50050 * 301.31924 * 10 9 7 31 31 H 1.09002 * 109.58486 * 185.58045 * 11 10 9 32 32 H 1.08999 * 109.70303 * 65.22151 * 11 10 9 33 33 H 1.07994 * 120.00044 * 14.68695 * 15 13 12 34 34 H 1.08007 * 119.99330 * 203.61557 * 16 15 13 35 35 H 1.07993 * 126.57805 * 359.97438 * 18 17 16 36 36 H 1.08005 * 126.54845 * 179.97438 * 19 18 17 37 37 H 0.97000 * 120.00446 * 0.02562 * 22 21 20 38 38 H 0.97000 * 120.00108 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.59228 * 65.92320 * 25 12 11 40 40 H 1.08994 * 109.58659 * 186.34713 * 25 12 11 41 41 H 1.09004 * 109.50077 * 298.57309 * 26 9 7 42 42 H 1.09004 * 109.50119 * 58.67435 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0214 -2.6369 0.0010 11 6 5.5530 -2.6331 0.0362 12 7 6.0496 -1.8175 -1.0806 13 6 6.9440 -2.3210 -1.9540 14 8 7.4179 -3.4269 -1.7703 15 6 7.3453 -1.5379 -3.1237 16 6 7.9983 -2.1358 -4.1462 17 6 7.8635 -3.5775 -4.3572 18 6 8.5815 -4.3324 -5.2634 19 6 8.1381 -5.6517 -5.1327 20 6 7.1691 -5.6534 -4.1540 21 6 6.4246 -6.8305 -3.6840 22 7 5.4967 -6.6984 -2.7155 23 8 6.6459 -7.9239 -4.1692 24 8 7.0190 -4.3941 -3.7005 25 6 5.5573 -0.4406 -1.2233 26 6 4.0215 -0.4713 -1.2478 27 1 -0.4850 0.8400 -0.0004 28 1 3.8743 -0.6803 0.8914 29 1 3.6796 -3.1435 -0.9016 30 1 3.6387 -3.1581 0.8785 31 1 5.9233 -3.6534 -0.0636 32 1 5.8978 -2.2097 0.9795 33 1 7.1200 -0.4827 -3.1704 34 1 8.6193 -1.5491 -4.8070 35 1 9.3400 -3.9726 -5.9428 36 1 8.4886 -6.5065 -5.6924 37 1 5.3199 -5.8265 -2.3288 38 1 5.0056 -7.4752 -2.4050 39 1 5.9004 0.1595 -0.3804 40 1 5.9305 -0.0138 -2.1542 41 1 3.6796 -0.9987 -2.1385 42 1 3.6389 0.5493 -1.2594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831940612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:17 Heat of formation + Delta-G solvation = -28.909901 kcal Electronic energy + Delta-G solvation = -27028.966638 eV Core-core repulsion = 23169.534285 eV Total energy + Delta-G solvation = -3859.432353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57043 -39.93785 -39.20661 -37.22894 -34.23042 -33.72152 -33.60810 -32.96606 -31.62752 -30.72958 -29.15867 -26.72363 -24.90208 -23.20484 -22.76875 -21.90396 -21.64825 -20.42769 -19.57085 -18.68420 -18.11457 -17.46260 -16.97805 -16.77083 -16.31909 -16.04236 -15.07692 -14.88590 -14.70857 -14.44546 -14.34549 -14.19542 -13.52477 -13.46143 -13.22899 -13.13516 -12.91283 -12.72285 -12.55361 -12.33351 -12.14366 -11.85593 -11.10531 -10.83759 -10.58902 -10.45354 -10.27238 -10.26792 -9.99480 -9.86804 -9.85183 -9.65859 -9.39670 -9.16597 -8.64379 -8.33181 -8.07721 -6.16651 -4.16503 0.19971 1.41653 2.47298 2.56241 3.08995 3.13860 3.21198 3.25077 3.31300 3.34323 3.43620 4.29762 4.35281 4.55372 4.74669 4.79789 5.01063 5.13362 5.30566 5.33261 5.50410 5.50803 5.55346 5.64279 5.71659 5.73964 5.80631 5.88776 5.94073 6.08707 6.19943 6.25795 6.52402 6.54115 6.54542 6.65903 6.80220 6.82029 7.08279 7.22477 7.38686 7.60850 7.66197 8.00986 8.31215 8.42028 8.87354 9.44944 10.96726 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.003728 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.729906 B = 7509.815009 C = 8385.571812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.112 4.112 11 C 0.110 3.890 12 N -0.595 5.595 13 C 0.536 3.464 14 O -0.535 6.535 15 C -0.188 4.188 16 C -0.019 4.019 17 C 0.044 3.956 18 C -0.197 4.197 19 C -0.130 4.130 20 C -0.072 4.072 21 C 0.612 3.388 22 N -0.838 5.838 23 O -0.532 6.532 24 O -0.113 6.113 25 C 0.099 3.901 26 C -0.135 4.135 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.412 0.588 38 H 0.408 0.592 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.583 -2.989 -8.021 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.150 4.150 11 C -0.012 4.012 12 N -0.327 5.327 13 C 0.326 3.674 14 O -0.414 6.414 15 C -0.209 4.209 16 C -0.038 4.038 17 C -0.009 4.009 18 C -0.216 4.216 19 C -0.150 4.150 20 C -0.126 4.126 21 C 0.396 3.604 22 N -0.400 5.400 23 O -0.411 6.411 24 O -0.006 6.006 25 C -0.023 4.023 26 C -0.173 4.173 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.242 0.758 38 H 0.240 0.760 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.675 -3.994 -8.047 18.941 hybrid contribution 0.047 1.389 0.208 1.405 sum 16.723 -2.605 -7.839 18.652 Atomic orbital electron populations 1.69892 1.06323 1.27005 1.50538 1.25049 0.94695 0.99066 0.94496 0.86870 0.80009 0.83704 0.77803 1.20531 1.22437 1.18995 1.21034 0.88688 0.94495 1.51020 0.90853 1.19126 0.96843 0.91666 0.92781 1.21827 0.91676 0.99656 1.01884 1.21768 0.95907 0.95621 0.87898 1.48049 1.41526 1.14650 1.28442 1.18307 0.79483 0.86004 0.83639 1.90810 1.54645 1.20055 1.75914 1.23501 1.00818 1.01978 0.94605 1.21560 0.96284 0.87853 0.98133 1.21200 0.94020 0.91466 0.94245 1.22129 1.03564 0.92786 1.03095 1.21990 0.96645 0.98261 0.98130 1.22412 1.04250 0.83938 1.02045 1.16596 0.78850 0.85611 0.79293 1.43715 1.40870 1.15274 1.40168 1.90888 1.66962 1.25021 1.58226 1.84383 1.50061 1.15923 1.50210 1.22106 0.97072 0.81796 1.01372 1.22467 0.91314 1.01167 1.02349 0.92599 0.95394 0.92320 0.91290 0.89918 0.92061 0.83507 0.81967 0.82355 0.82280 0.75841 0.76010 0.91623 0.90611 0.91521 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.89 20.30 24.38 -169.99 -4.14 16.15 16 4 H -0.28 -6.11 6.86 56.52 0.39 -5.73 16 5 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -5.67 6.53 56.52 0.37 -5.30 16 7 C -0.51 -13.47 9.14 -34.44 -0.31 -13.79 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.01 0.31 1.66 -91.73 -0.15 0.16 16 10 C -0.11 -2.00 5.30 -26.61 -0.14 -2.14 16 11 C 0.11 1.70 6.42 -3.70 -0.02 1.67 16 12 N -0.59 -8.95 2.97 -174.15 -0.52 -9.47 16 13 C 0.54 7.89 7.00 -12.99 -0.09 7.80 16 14 O -0.53 -9.06 12.56 -19.60 -0.25 -9.30 16 15 C -0.19 -2.09 9.27 -37.37 -0.35 -2.44 16 16 C -0.02 -0.18 10.04 -37.39 -0.38 -0.56 16 17 C 0.04 0.54 6.29 -36.39 -0.23 0.32 16 18 C -0.20 -2.09 10.88 -39.05 -0.42 -2.52 16 19 C -0.13 -1.59 10.64 -39.19 -0.42 -2.01 16 20 C -0.07 -1.02 7.16 -36.22 -0.26 -1.28 16 21 C 0.61 8.73 8.07 -12.71 -0.10 8.63 16 22 N -0.84 -9.62 8.87 30.34 0.27 -9.35 16 23 O -0.53 -8.82 17.70 5.23 0.09 -8.73 16 24 O -0.11 -1.66 6.86 -20.89 -0.14 -1.80 16 25 C 0.10 1.44 6.38 -3.48 -0.02 1.42 16 26 C -0.13 -2.52 4.86 -26.38 -0.13 -2.65 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.25 7.03 -51.93 -0.37 0.88 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.15 1.23 6.00 -52.49 -0.31 0.92 16 34 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.41 4.69 8.58 -40.82 -0.35 4.34 16 38 H 0.41 3.80 8.93 -40.82 -0.36 3.44 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.87 5.35 -51.93 -0.28 0.59 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.15 3.24 -51.93 -0.17 0.98 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -33.42 343.84 -7.06 -40.47 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.20 Total: 8.14 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.12 Total: -5.61 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.53 Total: -44.51 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.30 Total: -19.83 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.14 Total: 16.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.42 -7.06 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831940612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.562 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds