Wall clock time and date at job start Tue Mar 31 2020 12:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99747 * 2 1 4 4 H 1.48498 * 109.46957 * 269.99912 * 3 2 1 5 5 H 1.48497 * 109.47196 * 29.99581 * 3 2 1 6 6 H 1.48502 * 109.47437 * 149.99796 * 3 2 1 7 7 C 1.37875 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00583 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99657 * 180.02562 * 7 2 1 10 10 C 1.53037 * 109.45790 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.30982 * 181.37097 * 10 9 7 12 12 N 1.46932 * 108.77456 * 305.36017 * 11 10 9 13 13 C 1.34771 * 120.63379 * 233.58236 * 12 11 10 14 14 O 1.21711 * 119.99864 * 354.91776 * 13 12 11 15 15 C 1.46373 * 120.00060 * 174.91024 * 13 12 11 16 16 C 1.35253 * 119.99714 * 194.69240 * 15 13 12 17 17 C 1.46325 * 120.00579 * 23.61257 * 16 15 13 18 18 C 1.38087 * 125.82692 * 187.47952 * 17 16 15 19 19 C 1.39796 * 106.83741 * 179.97438 * 18 17 16 20 20 C 1.37729 * 106.90147 * 359.97438 * 19 18 17 21 21 C 1.46999 * 125.77036 * 180.02562 * 20 19 18 22 22 N 1.34778 * 119.99743 * 180.02562 * 21 20 19 23 23 O 1.21654 * 120.00076 * 0.02562 * 21 20 19 24 24 O 1.34577 * 125.82216 * 7.43717 * 17 16 15 25 25 C 1.46923 * 118.73510 * 53.86538 * 12 11 10 26 26 C 1.53042 * 109.44517 * 300.06204 * 9 7 2 27 27 H 0.96994 * 120.00512 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.45852 * 60.02699 * 9 7 2 29 29 H 1.09001 * 109.49938 * 61.42422 * 10 9 7 30 30 H 1.09000 * 109.50050 * 301.31924 * 10 9 7 31 31 H 1.09002 * 109.58486 * 185.58045 * 11 10 9 32 32 H 1.08999 * 109.70303 * 65.22151 * 11 10 9 33 33 H 1.07994 * 120.00044 * 14.68695 * 15 13 12 34 34 H 1.08007 * 119.99330 * 203.61557 * 16 15 13 35 35 H 1.07993 * 126.57805 * 359.97438 * 18 17 16 36 36 H 1.08005 * 126.54845 * 179.97438 * 19 18 17 37 37 H 0.97000 * 120.00446 * 0.02562 * 22 21 20 38 38 H 0.97000 * 120.00108 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.59228 * 65.92320 * 25 12 11 40 40 H 1.08994 * 109.58659 * 186.34713 * 25 12 11 41 41 H 1.09004 * 109.50077 * 298.57309 * 26 9 7 42 42 H 1.09004 * 109.50119 * 58.67435 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0214 -2.6369 0.0010 11 6 5.5530 -2.6331 0.0362 12 7 6.0496 -1.8175 -1.0806 13 6 6.9440 -2.3210 -1.9540 14 8 7.4179 -3.4269 -1.7703 15 6 7.3453 -1.5379 -3.1237 16 6 7.9983 -2.1358 -4.1462 17 6 7.8635 -3.5775 -4.3572 18 6 8.5815 -4.3324 -5.2634 19 6 8.1381 -5.6517 -5.1327 20 6 7.1691 -5.6534 -4.1540 21 6 6.4246 -6.8305 -3.6840 22 7 5.4967 -6.6984 -2.7155 23 8 6.6459 -7.9239 -4.1692 24 8 7.0190 -4.3941 -3.7005 25 6 5.5573 -0.4406 -1.2233 26 6 4.0215 -0.4713 -1.2478 27 1 -0.4850 0.8400 -0.0004 28 1 3.8743 -0.6803 0.8914 29 1 3.6796 -3.1435 -0.9016 30 1 3.6387 -3.1581 0.8785 31 1 5.9233 -3.6534 -0.0636 32 1 5.8978 -2.2097 0.9795 33 1 7.1200 -0.4827 -3.1704 34 1 8.6193 -1.5491 -4.8070 35 1 9.3400 -3.9726 -5.9428 36 1 8.4886 -6.5065 -5.6924 37 1 5.3199 -5.8265 -2.3288 38 1 5.0056 -7.4752 -2.4050 39 1 5.9004 0.1595 -0.3804 40 1 5.9305 -0.0138 -2.1542 41 1 3.6796 -0.9987 -2.1385 42 1 3.6389 0.5493 -1.2594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831940612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:17 Heat of formation + Delta-G solvation = -53.110570 kcal Electronic energy + Delta-G solvation = -27030.016057 eV Core-core repulsion = 23169.534285 eV Total energy + Delta-G solvation = -3860.481773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49519 -41.08128 -40.30998 -38.55706 -35.28132 -35.16758 -34.65449 -33.90147 -33.37182 -32.05884 -30.11748 -28.29466 -26.03103 -24.51054 -24.16049 -22.92465 -22.69247 -21.53162 -20.83019 -19.73368 -19.18644 -18.87528 -18.39615 -18.00643 -17.34024 -17.09963 -16.59818 -16.17208 -15.78738 -15.56425 -15.41395 -15.30971 -14.98745 -14.80605 -14.45757 -14.18613 -14.06453 -13.96100 -13.72310 -13.63243 -13.51631 -13.01136 -12.74589 -12.26399 -12.08227 -11.79497 -11.71692 -11.48214 -11.29447 -11.17879 -11.00514 -10.97180 -10.81949 -10.72607 -10.59899 -9.53631 -9.00248 -8.26564 -6.31758 -0.67177 0.48406 1.33093 1.41261 1.51565 1.58551 1.66406 2.04277 2.14583 2.36568 2.37604 2.49753 3.08908 3.51650 3.65050 3.84808 3.93997 4.06002 4.13611 4.25166 4.30033 4.42597 4.47649 4.58683 4.63622 4.68325 4.77515 4.82200 4.86222 4.97674 4.99638 5.08216 5.10871 5.20309 5.41618 5.47979 5.58986 5.63475 5.69510 5.77605 5.88961 6.22987 6.32934 6.52490 6.75800 6.99702 7.23813 7.34114 8.90594 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017565 B = 0.003728 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.729906 B = 7509.815009 C = 8385.571812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.257 1.257 5 H -0.307 1.307 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.025 0.975 9 C 0.013 3.987 10 C -0.104 4.104 11 C 0.119 3.881 12 N -0.601 5.601 13 C 0.529 3.471 14 O -0.564 6.564 15 C -0.207 4.207 16 C 0.002 3.998 17 C 0.020 3.980 18 C -0.182 4.182 19 C -0.132 4.132 20 C -0.106 4.106 21 C 0.607 3.393 22 N -0.826 5.826 23 O -0.565 6.565 24 O -0.134 6.134 25 C 0.106 3.894 26 C -0.132 4.132 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.180 0.820 34 H 0.215 0.785 35 H 0.199 0.801 36 H 0.170 0.830 37 H 0.413 0.587 38 H 0.417 0.583 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.054 0.946 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.311 -0.456 -9.530 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.235 1.235 6 H -0.158 1.158 7 C -0.559 4.559 8 H 0.043 0.957 9 C -0.006 4.006 10 C -0.143 4.143 11 C -0.003 4.003 12 N -0.333 5.333 13 C 0.321 3.679 14 O -0.445 6.445 15 C -0.227 4.227 16 C -0.017 4.017 17 C -0.033 4.033 18 C -0.200 4.200 19 C -0.153 4.153 20 C -0.160 4.160 21 C 0.392 3.608 22 N -0.388 5.388 23 O -0.447 6.447 24 O -0.028 6.028 25 C -0.016 4.016 26 C -0.171 4.171 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.197 0.803 34 H 0.231 0.769 35 H 0.216 0.784 36 H 0.187 0.813 37 H 0.243 0.757 38 H 0.250 0.750 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.072 0.928 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.418 -1.471 -9.548 22.589 hybrid contribution -1.170 0.453 0.668 1.422 sum 19.248 -1.018 -8.880 21.222 Atomic orbital electron populations 1.70080 1.08628 1.28045 1.52893 1.26027 0.95451 1.03567 0.94117 0.85795 0.79464 0.77805 0.79109 1.18299 1.23510 1.15786 1.21400 0.91797 0.92688 1.49981 0.95658 1.19096 0.93197 0.93968 0.94303 1.21686 0.93938 0.97647 1.01009 1.21564 0.93433 0.96279 0.89061 1.48100 1.41906 1.14862 1.28432 1.18983 0.78752 0.85888 0.84313 1.90803 1.55697 1.21483 1.76533 1.23602 1.02131 1.03146 0.93841 1.22259 0.94924 0.86432 0.98107 1.22058 0.93931 0.92862 0.94440 1.22586 1.03336 0.91470 1.02634 1.22349 0.95863 0.99710 0.97331 1.22485 1.05779 0.84055 1.03648 1.16782 0.79038 0.85566 0.79368 1.43637 1.40135 1.15707 1.39306 1.90853 1.68194 1.26144 1.59498 1.84356 1.51150 1.16162 1.51101 1.22132 0.93448 0.81814 1.04244 1.22296 0.94897 0.99874 0.99984 0.92722 0.95206 0.93693 0.91901 0.89884 0.90907 0.80254 0.76855 0.78375 0.81266 0.75698 0.75000 0.90154 0.86591 0.92758 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.00 0.26 5.45 84.65 0.46 0.72 16 3 Si 0.95 41.16 24.38 68.60 1.67 42.84 16 4 H -0.26 -10.21 6.86 99.48 0.68 -9.53 16 5 H -0.31 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.23 -8.91 6.53 99.48 0.65 -8.26 16 7 C -0.52 -28.29 9.14 25.60 0.23 -28.06 16 8 H 0.03 1.55 7.99 -2.91 -0.02 1.53 16 9 C 0.01 0.55 1.66 -11.51 -0.02 0.53 16 10 C -0.10 -3.76 5.30 30.67 0.16 -3.60 16 11 C 0.12 3.53 6.42 86.36 0.55 4.08 16 12 N -0.60 -16.46 2.97 -823.10 -2.44 -18.90 16 13 C 0.53 14.11 7.00 86.36 0.60 14.71 16 14 O -0.56 -18.27 12.56 19.31 0.24 -18.02 16 15 C -0.21 -3.62 9.27 23.70 0.22 -3.40 16 16 C 0.00 0.02 10.04 23.69 0.24 0.26 16 17 C 0.02 0.43 6.29 24.34 0.15 0.58 16 18 C -0.18 -3.24 10.88 22.61 0.25 -2.99 16 19 C -0.13 -3.05 10.64 22.53 0.24 -2.81 16 20 C -0.11 -2.98 7.16 24.45 0.18 -2.81 16 21 C 0.61 17.81 8.07 86.54 0.70 18.51 16 22 N -0.83 -19.73 8.87 -176.17 -1.56 -21.29 16 23 O -0.57 -19.31 17.70 -4.20 -0.07 -19.38 16 24 O -0.13 -3.79 6.86 14.69 0.10 -3.69 16 25 C 0.11 2.63 6.38 86.51 0.55 3.18 16 26 C -0.13 -4.65 4.86 30.82 0.15 -4.50 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 28 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.47 7.03 -2.39 -0.02 2.45 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.18 1.86 6.00 -2.91 -0.02 1.85 16 34 H 0.21 0.74 8.06 -2.91 -0.02 0.71 16 35 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.41 9.84 8.58 -92.71 -0.80 9.04 16 38 H 0.42 8.15 8.93 -92.71 -0.83 7.33 16 39 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.12 1.98 5.35 -2.39 -0.01 1.97 16 41 H 0.05 2.01 8.14 -2.38 -0.02 2.00 16 42 H 0.05 1.88 3.24 -2.38 -0.01 1.87 16 Total: -1.00 -78.16 343.84 2.29 -75.87 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.62 Total: 26.45 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.67 Total: -5.59 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -3.70 Total: -98.47 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: 0.27 Total: -41.09 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.67 Total: 42.84 kcal Total: -78.16 2.29 -75.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831940612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.761 kcal (2) G-P(sol) polarization free energy of solvation -78.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds