Wall clock time and date at job start Tue Mar 31 2020 12:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48502 * 109.46884 * 269.99817 * 3 2 1 5 5 H 1.48498 * 109.47343 * 30.00025 * 3 2 1 6 6 H 1.48503 * 109.46796 * 150.00028 * 3 2 1 7 7 C 1.37868 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00249 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99968 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47443 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99822 * 270.00297 * 10 9 7 12 12 C 1.53005 * 109.47034 * 269.99442 * 11 10 9 13 13 C 1.52995 * 117.50245 * 243.62051 * 12 11 10 14 14 C 1.53002 * 60.00232 * 252.51214 * 13 12 11 15 15 C 1.34777 * 120.00269 * 89.99585 * 10 9 7 16 16 O 1.21587 * 119.99984 * 0.02562 * 15 10 9 17 17 N 1.34784 * 119.99892 * 179.97438 * 15 10 9 18 18 C 1.39972 * 119.99589 * 175.33278 * 17 15 10 19 19 C 1.38993 * 119.99667 * 214.83768 * 18 17 15 20 20 C 1.38223 * 120.23878 * 179.76963 * 19 18 17 21 21 C 1.38007 * 120.22160 * 0.50669 * 20 19 18 22 22 C 1.39629 * 119.99217 * 359.74863 * 21 20 19 23 23 C 1.47742 * 120.11534 * 180.02562 * 22 21 20 24 24 O 1.21474 * 120.00002 * 179.97438 * 23 22 21 25 25 O 1.34713 * 120.00253 * 359.97202 * 23 22 21 26 26 C 1.38576 * 119.99847 * 35.11500 * 18 17 15 27 27 H 0.97000 * 119.99874 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47192 * 60.00323 * 9 7 2 29 29 H 1.09002 * 109.47544 * 300.00225 * 9 7 2 30 30 H 1.09001 * 109.47749 * 29.99396 * 11 10 9 31 31 H 1.09004 * 109.47706 * 149.99922 * 11 10 9 32 32 H 1.09000 * 115.54672 * 29.33415 * 12 11 10 33 33 H 1.09002 * 117.49560 * 359.97438 * 13 12 11 34 34 H 1.09000 * 117.49845 * 145.01898 * 13 12 11 35 35 H 1.08996 * 117.49615 * 252.51278 * 14 13 12 36 36 H 1.08996 * 117.50039 * 107.48999 * 14 13 12 37 37 H 0.97000 * 119.99935 * 355.06635 * 17 15 10 38 38 H 1.08001 * 119.87968 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.88814 * 180.25319 * 20 19 18 40 40 H 1.07998 * 120.00362 * 179.72429 * 21 20 19 41 41 H 0.96696 * 116.99760 * 179.97438 * 25 23 22 42 42 H 1.08002 * 120.11234 * 359.94738 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.2436 -3.2660 1.2697 12 6 5.6884 -3.0257 1.7120 13 6 6.6119 -4.2423 1.8005 14 6 6.1085 -3.5694 3.0791 15 6 4.2250 -3.2103 -1.1662 16 8 4.0231 -2.6368 -2.2192 17 7 4.6748 -4.4808 -1.1663 18 6 4.8155 -5.1733 -2.3745 19 6 4.5627 -6.5391 -2.4262 20 6 4.6955 -7.2270 -3.6177 21 6 5.0902 -6.5643 -4.7621 22 6 5.3518 -5.1934 -4.7198 23 6 5.7739 -4.4812 -5.9435 24 8 6.0004 -3.2884 -5.9044 25 8 5.9076 -5.1545 -7.1026 26 6 5.2125 -4.4983 -3.5178 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8753 -0.6803 -0.8888 30 1 3.5625 -2.8821 2.0292 31 1 4.0767 -4.3353 1.1392 32 1 6.1282 -2.0821 1.3889 33 1 6.1899 -5.2141 1.5440 34 1 7.6594 -4.0994 1.5354 35 1 6.8249 -2.9838 3.6551 36 1 5.3556 -4.0984 3.6633 37 1 4.9047 -4.9140 -0.3293 38 1 4.2583 -7.0641 -1.5328 39 1 4.4937 -8.2874 -3.6523 40 1 5.1972 -7.1061 -5.6902 41 1 6.1857 -4.6456 -7.8763 42 1 5.4129 -3.4378 -3.4788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:19 Heat of formation + Delta-G solvation = -51.131820 kcal Electronic energy + Delta-G solvation = -26454.243997 eV Core-core repulsion = 22593.848030 eV Total energy + Delta-G solvation = -3860.395968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69322 -39.99276 -38.49592 -37.35052 -36.09661 -34.90962 -34.35158 -32.46394 -31.29333 -29.79110 -28.25188 -26.31229 -24.85622 -23.31889 -22.46461 -21.91791 -21.22934 -20.91780 -19.37892 -18.35993 -17.90350 -17.41410 -16.92547 -16.25672 -15.85117 -15.62790 -15.34201 -15.07588 -14.93049 -14.49417 -14.05291 -13.94845 -13.76287 -13.37780 -13.25276 -12.79543 -12.58021 -12.27256 -12.01029 -11.72604 -11.63484 -11.59759 -11.56467 -11.50202 -10.96874 -10.65901 -10.60464 -10.43632 -10.24637 -10.10374 -10.02554 -9.54681 -9.39825 -9.04086 -8.58222 -8.18245 -7.73860 -6.08289 -4.07255 0.66662 1.35202 2.52505 2.84370 3.08122 3.30778 3.36316 3.39285 3.57599 3.71658 3.89682 4.24851 4.40303 4.76227 4.77758 4.86195 4.87276 5.01256 5.09871 5.17150 5.24294 5.25538 5.40381 5.53376 5.55043 5.66318 5.80531 5.83230 5.90531 6.03323 6.21067 6.23692 6.27707 6.31508 6.42358 6.50186 6.56356 6.85454 7.03469 7.19074 7.41004 7.60934 7.86883 8.36502 8.46879 8.94201 9.07303 9.51744 11.05106 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.004277 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.153310 B = 6545.652811 C = 8175.171579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.074 0.926 9 C 0.231 3.769 10 N -0.597 5.597 11 C 0.141 3.859 12 C -0.171 4.171 13 C -0.186 4.186 14 C -0.173 4.173 15 C 0.701 3.299 16 O -0.562 6.562 17 N -0.693 5.693 18 C 0.170 3.830 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.089 4.089 22 C -0.111 4.111 23 C 0.525 3.475 24 O -0.504 6.504 25 O -0.515 6.515 26 C -0.057 4.057 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.404 0.596 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.412 0.588 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.449 -16.082 -1.945 21.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.110 3.890 10 N -0.330 5.330 11 C 0.017 3.983 12 C -0.190 4.190 13 C -0.223 4.223 14 C -0.210 4.210 15 C 0.403 3.597 16 O -0.438 6.438 17 N -0.343 5.343 18 C 0.073 3.927 19 C -0.140 4.140 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.113 4.113 23 C 0.369 3.631 24 O -0.392 6.392 25 O -0.327 6.327 26 C -0.078 4.078 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.241 0.759 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.270 0.730 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.010 -15.301 -2.271 20.869 hybrid contribution 0.506 1.020 0.012 1.138 sum 14.515 -14.281 -2.259 20.488 Atomic orbital electron populations 1.69897 1.06204 1.26986 1.50453 1.24829 0.94746 0.98897 0.94398 0.86871 0.80145 0.83837 0.78953 1.19843 1.21080 1.19031 1.21324 0.89192 0.94845 1.51466 0.90759 1.19642 0.95574 0.76187 0.97599 1.47166 1.67179 1.16196 1.02498 1.21028 0.93464 0.96213 0.87623 1.23008 0.96719 0.98722 1.00598 1.23042 0.99857 0.96701 1.02653 1.22908 1.03571 1.03949 0.90616 1.15885 0.78318 0.80358 0.85126 1.90931 1.57789 1.65345 1.29725 1.42902 1.69609 1.14228 1.07532 1.17352 0.98046 0.90886 0.86392 1.21170 1.00547 0.93039 0.99208 1.20855 1.00563 1.00104 0.91764 1.21329 0.97617 0.92803 0.99067 1.18855 1.07453 0.93985 0.91034 1.20913 0.73785 0.85036 0.83337 1.90936 1.46475 1.16019 1.85801 1.84540 1.81634 1.46451 1.20083 1.21544 0.94158 1.02181 0.89920 0.92556 0.94884 0.94316 0.88634 0.91811 0.87244 0.89103 0.88958 0.88847 0.88539 0.75895 0.85201 0.84934 0.84674 0.72962 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 8 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.23 5.56 4.23 -5.20 -0.02 5.54 16 10 N -0.60 -11.97 2.46 -180.80 -0.44 -12.41 16 11 C 0.14 2.10 5.41 -4.04 -0.02 2.08 16 12 C -0.17 -2.13 6.01 -90.62 -0.54 -2.67 16 13 C -0.19 -1.79 9.85 -26.73 -0.26 -2.05 16 14 C -0.17 -1.69 10.25 -26.73 -0.27 -1.97 16 15 C 0.70 14.43 8.12 -86.91 -0.71 13.72 16 16 O -0.56 -14.09 13.35 5.29 0.07 -14.02 16 17 N -0.69 -10.72 5.17 -14.25 -0.07 -10.80 16 18 C 0.17 2.53 6.29 -83.74 -0.53 2.00 16 19 C -0.12 -1.33 9.96 -39.31 -0.39 -1.72 16 20 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16 21 C -0.09 -0.99 9.61 -39.15 -0.38 -1.36 16 22 C -0.11 -1.60 5.87 -105.00 -0.62 -2.22 16 23 C 0.53 7.54 8.27 34.61 0.29 7.83 16 24 O -0.50 -9.13 17.13 -19.25 -0.33 -9.46 16 25 O -0.52 -5.12 12.68 -40.53 -0.51 -5.64 16 26 C -0.06 -0.96 8.24 -38.97 -0.32 -1.28 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 30 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 31 H 0.06 0.79 6.18 -51.93 -0.32 0.47 16 32 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.09 0.75 7.67 -51.93 -0.40 0.35 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.89 5.92 -40.82 -0.24 4.65 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.14 1.19 7.60 -52.49 -0.40 0.79 16 41 H 0.41 2.24 9.11 45.56 0.42 2.66 16 42 H 0.16 3.21 5.80 -52.49 -0.30 2.91 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -37.03 359.91 -8.90 -45.93 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.52 Total: 7.98 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -4.62 Total: 2.97 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.26 Total: -50.15 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.77 Total: -29.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.03 -8.90 -45.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.205 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds