Wall clock time and date at job start Tue Mar 31 2020 12:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48502 * 109.46884 * 269.99817 * 3 2 1 5 5 H 1.48498 * 109.47343 * 30.00025 * 3 2 1 6 6 H 1.48503 * 109.46796 * 150.00028 * 3 2 1 7 7 C 1.37868 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00249 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99968 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47443 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99822 * 270.00297 * 10 9 7 12 12 C 1.53005 * 109.47034 * 269.99442 * 11 10 9 13 13 C 1.52995 * 117.50245 * 243.62051 * 12 11 10 14 14 C 1.53002 * 60.00232 * 252.51214 * 13 12 11 15 15 C 1.34777 * 120.00269 * 89.99585 * 10 9 7 16 16 O 1.21587 * 119.99984 * 0.02562 * 15 10 9 17 17 N 1.34784 * 119.99892 * 179.97438 * 15 10 9 18 18 C 1.39972 * 119.99589 * 175.33278 * 17 15 10 19 19 C 1.38993 * 119.99667 * 214.83768 * 18 17 15 20 20 C 1.38223 * 120.23878 * 179.76963 * 19 18 17 21 21 C 1.38007 * 120.22160 * 0.50669 * 20 19 18 22 22 C 1.39629 * 119.99217 * 359.74863 * 21 20 19 23 23 C 1.47742 * 120.11534 * 180.02562 * 22 21 20 24 24 O 1.21474 * 120.00002 * 179.97438 * 23 22 21 25 25 O 1.34713 * 120.00253 * 359.97202 * 23 22 21 26 26 C 1.38576 * 119.99847 * 35.11500 * 18 17 15 27 27 H 0.97000 * 119.99874 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47192 * 60.00323 * 9 7 2 29 29 H 1.09002 * 109.47544 * 300.00225 * 9 7 2 30 30 H 1.09001 * 109.47749 * 29.99396 * 11 10 9 31 31 H 1.09004 * 109.47706 * 149.99922 * 11 10 9 32 32 H 1.09000 * 115.54672 * 29.33415 * 12 11 10 33 33 H 1.09002 * 117.49560 * 359.97438 * 13 12 11 34 34 H 1.09000 * 117.49845 * 145.01898 * 13 12 11 35 35 H 1.08996 * 117.49615 * 252.51278 * 14 13 12 36 36 H 1.08996 * 117.50039 * 107.48999 * 14 13 12 37 37 H 0.97000 * 119.99935 * 355.06635 * 17 15 10 38 38 H 1.08001 * 119.87968 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.88814 * 180.25319 * 20 19 18 40 40 H 1.07998 * 120.00362 * 179.72429 * 21 20 19 41 41 H 0.96696 * 116.99760 * 179.97438 * 25 23 22 42 42 H 1.08002 * 120.11234 * 359.94738 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.2436 -3.2660 1.2697 12 6 5.6884 -3.0257 1.7120 13 6 6.6119 -4.2423 1.8005 14 6 6.1085 -3.5694 3.0791 15 6 4.2250 -3.2103 -1.1662 16 8 4.0231 -2.6368 -2.2192 17 7 4.6748 -4.4808 -1.1663 18 6 4.8155 -5.1733 -2.3745 19 6 4.5627 -6.5391 -2.4262 20 6 4.6955 -7.2270 -3.6177 21 6 5.0902 -6.5643 -4.7621 22 6 5.3518 -5.1934 -4.7198 23 6 5.7739 -4.4812 -5.9435 24 8 6.0004 -3.2884 -5.9044 25 8 5.9076 -5.1545 -7.1026 26 6 5.2125 -4.4983 -3.5178 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8753 -0.6803 -0.8888 30 1 3.5625 -2.8821 2.0292 31 1 4.0767 -4.3353 1.1392 32 1 6.1282 -2.0821 1.3889 33 1 6.1899 -5.2141 1.5440 34 1 7.6594 -4.0994 1.5354 35 1 6.8249 -2.9838 3.6551 36 1 5.3556 -4.0984 3.6633 37 1 4.9047 -4.9140 -0.3293 38 1 4.2583 -7.0641 -1.5328 39 1 4.4937 -8.2874 -3.6523 40 1 5.1972 -7.1061 -5.6902 41 1 6.1857 -4.6456 -7.8763 42 1 5.4129 -3.4378 -3.4788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:18 Heat of formation + Delta-G solvation = -77.303498 kcal Electronic energy + Delta-G solvation = -26455.378887 eV Core-core repulsion = 22593.848030 eV Total energy + Delta-G solvation = -3861.530857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95122 -41.21964 -39.60644 -38.43105 -37.13558 -36.38688 -35.79354 -34.57064 -32.29528 -31.18104 -29.86278 -27.72099 -25.91106 -24.97095 -23.32673 -23.20718 -22.30046 -21.99595 -20.76201 -19.58779 -19.16270 -19.04496 -18.57941 -17.45782 -16.99542 -16.74716 -16.64914 -16.38802 -16.23203 -15.83192 -15.65416 -15.01577 -14.95082 -14.67708 -14.45920 -14.40046 -13.95394 -13.80431 -13.45359 -13.05382 -12.86182 -12.73137 -12.65193 -12.55980 -12.46863 -12.29801 -12.09310 -11.80220 -11.77279 -11.49529 -11.29414 -11.14727 -10.84116 -10.76759 -10.05863 -9.64213 -9.09616 -8.35207 -6.39631 -0.35354 0.32671 1.29908 1.35564 1.42395 1.45968 1.58931 1.98598 2.14676 2.29317 2.76082 2.80931 2.99347 3.07741 3.81256 3.89483 3.96423 4.00669 4.07706 4.12575 4.22105 4.24026 4.41399 4.53310 4.62767 4.70170 4.78068 4.82884 4.87344 4.93046 5.06387 5.22651 5.26711 5.29141 5.31960 5.32850 5.43304 5.46332 5.51697 5.57029 5.92268 5.95439 6.24666 6.61107 6.92137 6.94001 7.21839 7.53933 8.81764 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.004277 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.153310 B = 6545.652811 C = 8175.171579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.238 1.238 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.243 3.757 10 N -0.604 5.604 11 C 0.140 3.860 12 C -0.196 4.196 13 C -0.169 4.169 14 C -0.156 4.156 15 C 0.695 3.305 16 O -0.619 6.619 17 N -0.672 5.672 18 C 0.139 3.861 19 C -0.100 4.100 20 C -0.099 4.099 21 C -0.071 4.071 22 C -0.133 4.133 23 C 0.529 3.471 24 O -0.557 6.557 25 O -0.495 6.495 26 C -0.090 4.090 27 H 0.268 0.732 28 H 0.053 0.947 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.421 0.579 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.433 0.567 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.127 -19.518 -1.125 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.161 1.161 7 C -0.573 4.573 8 H 0.049 0.951 9 C 0.120 3.880 10 N -0.337 5.337 11 C 0.017 3.983 12 C -0.216 4.216 13 C -0.206 4.206 14 C -0.194 4.194 15 C 0.397 3.603 16 O -0.499 6.499 17 N -0.323 5.323 18 C 0.044 3.956 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.135 4.135 23 C 0.375 3.625 24 O -0.450 6.450 25 O -0.308 6.308 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.261 0.739 38 H 0.184 0.816 39 H 0.200 0.800 40 H 0.184 0.816 41 H 0.294 0.706 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.735 -18.835 -1.428 24.584 hybrid contribution -0.040 1.871 -0.352 1.904 sum 15.695 -16.964 -1.779 23.179 Atomic orbital electron populations 1.70040 1.08095 1.28268 1.51980 1.25766 0.95621 1.03060 0.93893 0.85789 0.80026 0.78780 0.78798 1.20697 1.19688 1.16083 1.21542 0.91472 0.93272 1.50971 0.95106 1.19237 0.92644 0.78984 0.97118 1.47089 1.66978 1.15181 1.04415 1.21258 0.95059 0.97084 0.84869 1.22724 0.95536 0.99524 1.03827 1.23181 0.99541 0.96139 1.01751 1.23021 1.03471 1.03047 0.89836 1.16138 0.78191 0.81710 0.84311 1.90900 1.60129 1.67072 1.31765 1.42506 1.68648 1.12311 1.08861 1.17646 1.00066 0.92482 0.85397 1.21598 0.98169 0.90940 1.01381 1.21445 0.97932 1.02145 0.90209 1.21738 0.95229 0.91008 1.01016 1.18981 1.08805 0.95631 0.90103 1.21081 0.72608 0.84367 0.84419 1.90916 1.49067 1.18295 1.86687 1.84477 1.80824 1.45824 1.19690 1.21281 0.97118 1.00417 0.92347 0.92262 0.92895 0.96676 0.89848 0.89055 0.89403 0.86991 0.88405 0.87986 0.87188 0.73887 0.81577 0.80015 0.81626 0.70552 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.54 13.96 21.44 0.30 -60.24 16 2 C 0.01 0.89 5.47 84.65 0.46 1.35 16 3 Si 0.94 45.72 27.47 68.60 1.88 47.61 16 4 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 7 C -0.53 -31.99 9.94 25.60 0.25 -31.74 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C 0.24 12.18 4.23 85.63 0.36 12.55 16 10 N -0.60 -25.16 2.46 -844.17 -2.07 -27.23 16 11 C 0.14 4.13 5.41 86.38 0.47 4.59 16 12 C -0.20 -4.68 6.01 -10.79 -0.06 -4.75 16 13 C -0.17 -2.78 9.85 30.59 0.30 -2.48 16 14 C -0.16 -2.63 10.25 30.60 0.31 -2.32 16 15 C 0.69 30.08 8.12 179.05 1.45 31.54 16 16 O -0.62 -33.61 13.35 -3.99 -0.05 -33.67 16 17 N -0.67 -20.85 5.17 -317.27 -1.64 -22.50 16 18 C 0.14 4.10 6.29 38.10 0.24 4.34 16 19 C -0.10 -1.88 9.96 22.45 0.22 -1.66 16 20 C -0.10 -1.45 10.02 22.21 0.22 -1.22 16 21 C -0.07 -1.33 9.61 22.55 0.22 -1.12 16 22 C -0.13 -3.83 5.87 -20.11 -0.12 -3.95 16 23 C 0.53 15.59 8.27 70.33 0.58 16.17 16 24 O -0.56 -21.76 17.13 19.92 0.34 -21.42 16 25 O -0.49 -9.12 12.68 -56.23 -0.71 -9.83 16 26 C -0.09 -3.22 8.24 22.67 0.19 -3.03 16 27 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 28 H 0.05 2.43 7.13 -2.39 -0.02 2.42 16 29 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 30 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 31 H 0.09 2.11 6.18 -2.38 -0.01 2.10 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.11 1.37 7.67 -2.39 -0.02 1.35 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.42 9.48 5.92 -92.71 -0.55 8.93 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.17 2.10 7.60 -2.91 -0.02 2.08 16 41 H 0.43 4.11 9.11 -74.06 -0.67 3.44 16 42 H 0.11 4.97 5.80 -2.91 -0.02 4.95 16 Total: -1.00 -90.76 359.91 2.95 -87.81 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.20 Total: 21.18 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 5.10 Total: 18.27 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -3.41 Total: -109.96 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -0.42 Total: -64.91 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -90.76 2.95 -87.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.506 kcal (2) G-P(sol) polarization free energy of solvation -90.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds