Wall clock time and date at job start Tue Mar 31 2020 11:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00018 * 2 1 4 4 H 1.48495 * 109.47346 * 270.00409 * 3 2 1 5 5 H 1.48502 * 109.47175 * 30.00701 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00291 * 3 2 1 7 7 C 1.37879 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00449 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47679 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00098 * 270.00405 * 10 9 7 12 12 C 1.52999 * 109.47022 * 269.99790 * 11 10 9 13 13 C 1.52998 * 117.49634 * 243.62282 * 12 11 10 14 14 C 1.52991 * 117.49897 * 174.99942 * 12 11 10 15 15 C 1.34777 * 119.99532 * 89.99419 * 10 9 7 16 16 O 1.21571 * 120.00330 * 0.02562 * 15 10 9 17 17 N 1.34774 * 119.99518 * 180.27608 * 15 10 9 18 18 C 1.39405 * 120.00278 * 174.37070 * 17 15 10 19 19 C 1.39161 * 119.91518 * 326.31294 * 18 17 15 20 20 C 1.37638 * 120.07246 * 179.76079 * 19 18 17 21 21 C 1.39806 * 119.92330 * 0.51397 * 20 19 18 22 22 C 1.47451 * 120.08174 * 179.71979 * 21 20 19 23 23 O 1.21507 * 120.00329 * 180.02562 * 22 21 20 24 24 O 1.34759 * 119.99736 * 0.02562 * 22 21 20 25 25 C 1.39816 * 119.84392 * 359.74238 * 21 20 19 26 26 C 1.37639 * 119.91973 * 0.02562 * 25 21 20 27 27 H 0.96996 * 119.99940 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47039 * 59.99777 * 9 7 2 29 29 H 1.09005 * 109.46953 * 300.00188 * 9 7 2 30 30 H 1.09005 * 109.46904 * 29.99462 * 11 10 9 31 31 H 1.08995 * 109.47255 * 149.99108 * 11 10 9 32 32 H 1.09001 * 115.54908 * 29.32330 * 12 11 10 33 33 H 1.09005 * 117.50064 * 359.97438 * 13 12 11 34 34 H 1.09006 * 117.50037 * 145.01630 * 13 12 11 35 35 H 1.09002 * 117.50103 * 214.97700 * 14 12 11 36 36 H 1.09000 * 117.50390 * 0.02562 * 14 12 11 37 37 H 0.97003 * 120.00179 * 354.37777 * 17 15 10 38 38 H 1.07998 * 119.96058 * 0.02562 * 19 18 17 39 39 H 1.08006 * 120.03209 * 180.23648 * 20 19 18 40 40 H 0.96701 * 116.99981 * 180.02562 * 24 22 21 41 41 H 1.07998 * 120.04266 * 179.97438 * 25 21 20 42 42 H 1.07994 * 119.95829 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7482 -5.3007 -1.7110 13 6 2.3402 -6.7087 -1.7993 14 6 2.0086 -5.9366 -3.0778 15 6 2.6408 -4.1249 1.1667 16 8 2.2456 -3.6630 2.2195 17 7 3.5208 -5.1456 1.1667 18 6 4.0636 -5.5981 2.3684 19 6 4.3071 -4.6988 3.4021 20 6 4.8383 -5.1428 4.5917 21 6 5.1432 -6.4972 4.7570 22 6 5.7182 -6.9756 6.0277 23 8 5.9831 -8.1529 6.1696 24 8 5.9498 -6.1070 7.0317 25 6 4.9022 -7.3969 3.7143 26 6 4.3664 -6.9467 2.5291 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.6867 -3.3878 -2.0289 31 1 3.6884 -4.5594 -1.1389 32 1 0.7113 -5.2097 -1.3874 33 1 3.3928 -6.8292 -1.5431 34 1 1.6927 -7.5445 -1.5337 35 1 1.1431 -6.2644 -3.6536 36 1 2.8433 -5.5496 -3.6623 37 1 3.7767 -5.5655 0.3305 38 1 4.0750 -3.6521 3.2723 39 1 5.0234 -4.4449 5.3950 40 1 6.3280 -6.4674 7.8455 41 1 5.1370 -8.4437 3.8383 42 1 4.1803 -7.6410 1.7232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:52 Heat of formation + Delta-G solvation = -59.180382 kcal Electronic energy + Delta-G solvation = -26100.016057 eV Core-core repulsion = 22239.271078 eV Total energy + Delta-G solvation = -3860.744980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69151 -40.09188 -38.45859 -37.32458 -36.16866 -34.86439 -34.36373 -32.57546 -31.06286 -30.00826 -27.87622 -26.30760 -24.51363 -22.91664 -22.82901 -22.40242 -21.24682 -20.83806 -19.36999 -18.30596 -18.06696 -17.47942 -17.01503 -16.54420 -15.68532 -15.31956 -15.20452 -15.09128 -14.55514 -14.48012 -14.18129 -13.91645 -13.59435 -13.41797 -13.33695 -12.82528 -12.50723 -12.37891 -12.21226 -11.70031 -11.63906 -11.55456 -11.28261 -11.27220 -10.95724 -10.73430 -10.67517 -10.45610 -10.28472 -10.14866 -10.00209 -9.70564 -9.42399 -9.00085 -8.48462 -8.17343 -7.76153 -6.09500 -4.14510 0.66532 1.38804 2.46829 2.93670 3.02938 3.26957 3.34309 3.38347 3.56210 3.74179 3.93649 4.24640 4.42671 4.74803 4.80722 4.88733 4.91646 5.01808 5.07697 5.24534 5.25723 5.28084 5.42472 5.53797 5.56382 5.69109 5.85941 5.89856 5.97610 6.05666 6.16269 6.26818 6.29180 6.31906 6.37491 6.55036 6.70468 7.03093 7.26171 7.38897 7.54328 7.80163 7.87308 8.16080 8.41296 8.85193 9.07973 9.50955 10.98487 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.003671 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.501260 B = 7626.221638 C = 9742.629104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.260 3.740 10 N -0.600 5.600 11 C 0.140 3.860 12 C -0.169 4.169 13 C -0.187 4.187 14 C -0.173 4.173 15 C 0.698 3.302 16 O -0.561 6.561 17 N -0.693 5.693 18 C 0.227 3.773 19 C -0.140 4.140 20 C -0.035 4.035 21 C -0.169 4.169 22 C 0.533 3.467 23 O -0.526 6.526 24 O -0.513 6.513 25 C -0.029 4.029 26 C -0.174 4.174 27 H 0.264 0.736 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.404 0.596 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.411 0.589 41 H 0.137 0.863 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -14.531 1.245 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.141 3.859 10 N -0.334 5.334 11 C 0.016 3.984 12 C -0.188 4.188 13 C -0.224 4.224 14 C -0.211 4.211 15 C 0.400 3.600 16 O -0.437 6.437 17 N -0.341 5.341 18 C 0.129 3.871 19 C -0.161 4.161 20 C -0.054 4.054 21 C -0.172 4.172 22 C 0.379 3.621 23 O -0.417 6.417 24 O -0.324 6.324 25 C -0.048 4.048 26 C -0.196 4.196 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.241 0.759 38 H 0.168 0.832 39 H 0.157 0.843 40 H 0.269 0.731 41 H 0.155 0.845 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.021 -14.083 1.591 16.800 hybrid contribution 0.713 0.441 -0.028 0.839 sum 9.733 -13.642 1.562 16.831 Atomic orbital electron populations 1.69924 1.05988 1.27115 1.50191 1.24917 0.94866 0.99193 0.94994 0.86497 0.79862 0.83067 0.77993 1.20658 1.21067 1.19892 1.21422 0.93371 0.90603 1.51374 0.92430 1.19283 0.86775 0.81150 0.98675 1.47586 1.47849 1.35805 1.02142 1.21018 0.94413 0.95126 0.87871 1.22999 1.01701 0.93641 1.00475 1.23049 1.01185 0.95405 1.02786 1.22900 1.03467 1.04053 0.90653 1.15936 0.79274 0.79372 0.85393 1.90927 1.60595 1.62267 1.29887 1.43077 1.46037 1.37060 1.07925 1.17894 0.90731 0.91957 0.86568 1.21356 1.00232 1.01504 0.93001 1.21320 0.93024 0.94047 0.96989 1.18895 1.10610 0.95132 0.92522 1.20887 0.74251 0.83189 0.83775 1.90865 1.50292 1.18327 1.82221 1.84602 1.77133 1.44048 1.26628 1.20908 0.93758 0.99404 0.90735 1.20764 1.06405 0.93410 0.98983 0.92648 0.94627 0.93627 0.88774 0.92118 0.87112 0.89190 0.88941 0.88826 0.88643 0.75851 0.83234 0.84347 0.73089 0.84503 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.34 9.39 -34.44 -0.32 -14.67 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.26 6.44 5.16 -5.20 -0.03 6.41 16 10 N -0.60 -11.82 2.46 -180.81 -0.44 -12.27 16 11 C 0.14 2.07 5.41 -4.04 -0.02 2.04 16 12 C -0.17 -2.12 6.01 -90.63 -0.54 -2.67 16 13 C -0.19 -1.82 9.85 -26.73 -0.26 -2.08 16 14 C -0.17 -1.73 10.25 -26.74 -0.27 -2.00 16 15 C 0.70 13.86 8.00 -86.92 -0.70 13.17 16 16 O -0.56 -13.47 13.61 5.30 0.07 -13.40 16 17 N -0.69 -10.36 5.15 -14.22 -0.07 -10.43 16 18 C 0.23 3.28 6.27 -83.74 -0.53 2.76 16 19 C -0.14 -2.18 8.62 -39.46 -0.34 -2.52 16 20 C -0.03 -0.46 9.60 -39.21 -0.38 -0.84 16 21 C -0.17 -2.16 5.87 -104.97 -0.62 -2.78 16 22 C 0.53 6.54 8.26 34.48 0.28 6.83 16 23 O -0.53 -7.57 17.12 -19.27 -0.33 -7.90 16 24 O -0.51 -4.83 12.67 -40.65 -0.52 -5.35 16 25 C -0.03 -0.34 9.58 -39.21 -0.38 -0.72 16 26 C -0.17 -2.03 9.94 -39.46 -0.39 -2.42 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 31 H 0.06 0.74 6.17 -51.93 -0.32 0.42 16 32 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.09 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.80 5.92 -40.82 -0.24 4.56 16 38 H 0.15 2.71 6.42 -52.49 -0.34 2.37 16 39 H 0.14 1.64 7.60 -52.48 -0.40 1.24 16 40 H 0.41 1.91 9.11 45.56 0.42 2.32 16 41 H 0.14 1.43 7.64 -52.49 -0.40 1.03 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -33.72 363.70 -9.25 -42.97 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.57 Total: 7.52 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -4.59 Total: 2.15 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.22 Total: -47.74 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.77 Total: -26.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.72 -9.25 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.210 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds