Wall clock time and date at job start Tue Mar 31 2020 11:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00018 * 2 1 4 4 H 1.48495 * 109.47346 * 270.00409 * 3 2 1 5 5 H 1.48502 * 109.47175 * 30.00701 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00291 * 3 2 1 7 7 C 1.37879 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00449 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47679 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00098 * 270.00405 * 10 9 7 12 12 C 1.52999 * 109.47022 * 269.99790 * 11 10 9 13 13 C 1.52998 * 117.49634 * 243.62282 * 12 11 10 14 14 C 1.52991 * 117.49897 * 174.99942 * 12 11 10 15 15 C 1.34777 * 119.99532 * 89.99419 * 10 9 7 16 16 O 1.21571 * 120.00330 * 0.02562 * 15 10 9 17 17 N 1.34774 * 119.99518 * 180.27608 * 15 10 9 18 18 C 1.39405 * 120.00278 * 174.37070 * 17 15 10 19 19 C 1.39161 * 119.91518 * 326.31294 * 18 17 15 20 20 C 1.37638 * 120.07246 * 179.76079 * 19 18 17 21 21 C 1.39806 * 119.92330 * 0.51397 * 20 19 18 22 22 C 1.47451 * 120.08174 * 179.71979 * 21 20 19 23 23 O 1.21507 * 120.00329 * 180.02562 * 22 21 20 24 24 O 1.34759 * 119.99736 * 0.02562 * 22 21 20 25 25 C 1.39816 * 119.84392 * 359.74238 * 21 20 19 26 26 C 1.37639 * 119.91973 * 0.02562 * 25 21 20 27 27 H 0.96996 * 119.99940 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47039 * 59.99777 * 9 7 2 29 29 H 1.09005 * 109.46953 * 300.00188 * 9 7 2 30 30 H 1.09005 * 109.46904 * 29.99462 * 11 10 9 31 31 H 1.08995 * 109.47255 * 149.99108 * 11 10 9 32 32 H 1.09001 * 115.54908 * 29.32330 * 12 11 10 33 33 H 1.09005 * 117.50064 * 359.97438 * 13 12 11 34 34 H 1.09006 * 117.50037 * 145.01630 * 13 12 11 35 35 H 1.09002 * 117.50103 * 214.97700 * 14 12 11 36 36 H 1.09000 * 117.50390 * 0.02562 * 14 12 11 37 37 H 0.97003 * 120.00179 * 354.37777 * 17 15 10 38 38 H 1.07998 * 119.96058 * 0.02562 * 19 18 17 39 39 H 1.08006 * 120.03209 * 180.23648 * 20 19 18 40 40 H 0.96701 * 116.99981 * 180.02562 * 24 22 21 41 41 H 1.07998 * 120.04266 * 179.97438 * 25 21 20 42 42 H 1.07994 * 119.95829 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7482 -5.3007 -1.7110 13 6 2.3402 -6.7087 -1.7993 14 6 2.0086 -5.9366 -3.0778 15 6 2.6408 -4.1249 1.1667 16 8 2.2456 -3.6630 2.2195 17 7 3.5208 -5.1456 1.1667 18 6 4.0636 -5.5981 2.3684 19 6 4.3071 -4.6988 3.4021 20 6 4.8383 -5.1428 4.5917 21 6 5.1432 -6.4972 4.7570 22 6 5.7182 -6.9756 6.0277 23 8 5.9831 -8.1529 6.1696 24 8 5.9498 -6.1070 7.0317 25 6 4.9022 -7.3969 3.7143 26 6 4.3664 -6.9467 2.5291 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.6867 -3.3878 -2.0289 31 1 3.6884 -4.5594 -1.1389 32 1 0.7113 -5.2097 -1.3874 33 1 3.3928 -6.8292 -1.5431 34 1 1.6927 -7.5445 -1.5337 35 1 1.1431 -6.2644 -3.6536 36 1 2.8433 -5.5496 -3.6623 37 1 3.7767 -5.5655 0.3305 38 1 4.0750 -3.6521 3.2723 39 1 5.0234 -4.4449 5.3950 40 1 6.3280 -6.4674 7.8455 41 1 5.1370 -8.4437 3.8383 42 1 4.1803 -7.6410 1.7232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:52 Heat of formation + Delta-G solvation = -80.441658 kcal Electronic energy + Delta-G solvation = -26100.938015 eV Core-core repulsion = 22239.271078 eV Total energy + Delta-G solvation = -3861.666938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93233 -41.19036 -39.58178 -38.40446 -37.06727 -36.34307 -35.79762 -34.55203 -32.09040 -31.23786 -29.58353 -27.71671 -25.88010 -24.48181 -23.95488 -23.17972 -22.37695 -21.90231 -20.71242 -19.55218 -19.06033 -18.67629 -18.53893 -18.15992 -16.85664 -16.67383 -16.58068 -16.31083 -15.91759 -15.60778 -15.45316 -15.06308 -14.83868 -14.54143 -14.47922 -14.33580 -13.90334 -13.67630 -13.49633 -13.21021 -12.93396 -12.63272 -12.57856 -12.54181 -12.34796 -12.28592 -12.20814 -11.78036 -11.73386 -11.51216 -11.28908 -11.13738 -10.76427 -10.62645 -10.04336 -9.62955 -9.15143 -8.21088 -6.35534 -0.38061 0.37206 1.37449 1.40201 1.42293 1.50743 1.65249 2.13536 2.15104 2.39452 2.77700 2.81172 3.07011 3.10714 3.77684 3.84648 3.93115 3.98800 4.07637 4.12610 4.24760 4.24833 4.45352 4.50559 4.66293 4.77328 4.83548 4.90775 5.00779 5.07498 5.11630 5.19143 5.25950 5.28552 5.29819 5.33218 5.42932 5.54332 5.59947 5.76955 5.88933 6.02644 6.06237 6.73165 6.96872 7.00511 7.31156 7.56344 8.85709 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.003671 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.501260 B = 7626.221638 C = 9742.629104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.280 3.720 10 N -0.605 5.605 11 C 0.140 3.860 12 C -0.197 4.197 13 C -0.166 4.166 14 C -0.160 4.160 15 C 0.696 3.304 16 O -0.613 6.613 17 N -0.672 5.672 18 C 0.204 3.796 19 C -0.162 4.162 20 C -0.034 4.034 21 C -0.172 4.172 22 C 0.540 3.460 23 O -0.547 6.547 24 O -0.508 6.508 25 C -0.025 4.025 26 C -0.153 4.153 27 H 0.267 0.733 28 H 0.026 0.974 29 H 0.000 1.000 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.421 0.579 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.433 0.567 41 H 0.158 0.842 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 -16.570 0.521 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.159 3.841 10 N -0.338 5.338 11 C 0.017 3.983 12 C -0.217 4.217 13 C -0.203 4.203 14 C -0.197 4.197 15 C 0.398 3.602 16 O -0.492 6.492 17 N -0.322 5.322 18 C 0.107 3.893 19 C -0.183 4.183 20 C -0.053 4.053 21 C -0.174 4.174 22 C 0.386 3.614 23 O -0.440 6.440 24 O -0.322 6.322 25 C -0.044 4.044 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.261 0.739 38 H 0.132 0.868 39 H 0.165 0.835 40 H 0.295 0.705 41 H 0.176 0.824 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.336 -16.175 0.846 19.769 hybrid contribution 0.034 1.006 0.290 1.048 sum 11.369 -15.168 1.137 18.990 Atomic orbital electron populations 1.70045 1.07513 1.28130 1.51010 1.25803 0.95732 1.02873 0.94485 0.85444 0.78283 0.78528 0.78721 1.18886 1.20789 1.19816 1.21698 0.93283 0.91856 1.51185 0.92815 1.18659 0.87092 0.82519 0.95864 1.47383 1.47200 1.35005 1.04229 1.21234 0.96388 0.95503 0.85134 1.22700 0.99982 0.95170 1.03815 1.23203 1.02435 0.93213 1.01439 1.23014 1.04103 1.02624 0.89969 1.16074 0.79626 0.80035 0.84470 1.90889 1.62505 1.64127 1.31709 1.42633 1.44765 1.35610 1.09146 1.18106 0.91976 0.93159 0.86063 1.21181 1.02106 1.00284 0.94753 1.21325 0.92746 0.94808 0.96392 1.19111 1.10091 0.94853 0.93377 1.20722 0.73731 0.82919 0.83995 1.90862 1.51333 1.19141 1.82689 1.84560 1.76783 1.43538 1.27280 1.21214 0.92752 1.00216 0.90239 1.21042 1.04249 0.92216 0.99842 0.92429 0.95580 0.98233 0.90004 0.88940 0.90036 0.86730 0.88194 0.88261 0.87169 0.73871 0.86807 0.83536 0.70533 0.82409 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.28 14.76 5.16 85.63 0.44 15.20 16 10 N -0.61 -24.83 2.46 -844.23 -2.07 -26.91 16 11 C 0.14 4.08 5.41 86.38 0.47 4.55 16 12 C -0.20 -4.82 6.01 -10.80 -0.06 -4.89 16 13 C -0.17 -2.68 9.85 30.59 0.30 -2.38 16 14 C -0.16 -2.78 10.25 30.59 0.31 -2.47 16 15 C 0.70 28.66 8.00 179.06 1.43 30.09 16 16 O -0.61 -31.37 13.61 -3.94 -0.05 -31.42 16 17 N -0.67 -19.61 5.15 -317.18 -1.63 -21.25 16 18 C 0.20 5.72 6.27 38.38 0.24 5.96 16 19 C -0.16 -5.18 8.62 22.35 0.19 -4.99 16 20 C -0.03 -0.89 9.60 22.51 0.22 -0.68 16 21 C -0.17 -4.08 5.87 -20.09 -0.12 -4.20 16 22 C 0.54 12.14 8.26 70.25 0.58 12.72 16 23 O -0.55 -14.49 17.12 19.81 0.34 -14.15 16 24 O -0.51 -8.52 12.67 -56.70 -0.72 -9.24 16 25 C -0.03 -0.52 9.58 22.51 0.22 -0.31 16 26 C -0.15 -3.08 9.94 22.35 0.22 -2.86 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 29 H 0.00 -0.03 7.42 -2.38 -0.02 -0.05 16 30 H 0.08 2.56 8.07 -2.38 -0.02 2.54 16 31 H 0.09 2.05 6.17 -2.39 -0.01 2.03 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 33 H 0.11 1.30 7.67 -2.38 -0.02 1.28 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 8.97 5.92 -92.71 -0.55 8.42 16 38 H 0.11 4.47 6.42 -2.91 -0.02 4.45 16 39 H 0.15 3.48 7.60 -2.91 -0.02 3.45 16 40 H 0.43 2.96 9.11 -74.06 -0.67 2.29 16 41 H 0.16 2.67 7.64 -2.91 -0.02 2.64 16 42 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -77.85 363.70 3.17 -74.68 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.15 Total: 20.51 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.14 Total: 16.48 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.42 Total: -103.24 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.43 Total: -54.80 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -77.85 3.17 -74.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.757 kcal (2) G-P(sol) polarization free energy of solvation -77.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds