Wall clock time and date at job start Tue Mar 31 2020 12:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86806 * 119.99577 * 2 1 4 4 H 1.48501 * 109.46850 * 240.00044 * 3 2 1 5 5 H 1.48500 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46846 * 120.00258 * 3 2 1 7 7 C 1.40027 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99887 * 156.78245 * 7 2 1 9 9 C 1.41542 * 120.00525 * 336.78354 * 7 2 1 10 10 C 1.41173 * 120.99124 * 328.48112 * 9 7 2 11 11 C 1.37595 * 119.01327 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.10623 * 359.97438 * 11 10 9 13 13 C 1.32466 * 122.23543 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.57864 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00347 * 354.56353 * 14 13 12 16 16 O 1.21278 * 119.99657 * 5.24202 * 15 14 13 17 17 C 1.50699 * 120.00142 * 185.24381 * 15 14 13 18 18 H 1.08993 * 109.47326 * 60.00025 * 17 15 14 19 19 C 1.52998 * 109.47167 * 299.99746 * 17 15 14 20 20 C 1.52996 * 109.47381 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.46880 * 60.00197 * 20 19 17 22 22 C 1.52991 * 109.47223 * 299.99992 * 21 20 19 23 23 H 1.09005 * 109.47552 * 300.00090 * 22 21 20 24 24 C 1.50704 * 109.47280 * 179.97438 * 22 21 20 25 25 O 1.20825 * 119.99857 * 239.99944 * 24 22 21 26 26 O 1.34223 * 119.99774 * 60.00344 * 24 22 21 27 27 C 1.53003 * 109.47357 * 59.99985 * 22 21 20 28 28 C 1.38596 * 120.83888 * 359.71559 * 13 12 11 29 29 H 0.97000 * 119.99380 * 174.08346 * 1 2 3 30 30 H 1.08006 * 120.49439 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.44445 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99769 * 174.56918 * 14 13 12 33 33 H 1.09005 * 109.47627 * 300.00278 * 19 17 15 34 34 H 1.08995 * 109.47021 * 60.00123 * 19 17 15 35 35 H 1.09001 * 109.47435 * 300.00606 * 20 19 17 36 36 H 1.08999 * 109.47350 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.47258 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47257 * 60.00534 * 21 20 19 39 39 H 0.96700 * 117.00461 * 179.97438 * 26 24 22 40 40 H 1.08992 * 109.47249 * 179.97438 * 27 22 21 41 41 H 1.09005 * 109.46703 * 59.99586 * 27 22 21 42 42 H 1.07998 * 120.60166 * 180.30831 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0220 -1.2507 -0.3682 9 6 1.3860 -2.3887 0.4843 10 6 0.4254 -2.3310 1.5172 11 6 -0.1530 -3.4995 1.9567 12 7 0.1761 -4.6645 1.4285 13 6 1.0710 -4.7727 0.4579 14 7 1.3763 -6.0312 -0.0599 15 6 0.8457 -7.1368 0.4992 16 8 0.0297 -7.0336 1.3904 17 6 1.2665 -8.5011 0.0169 18 1 2.3400 -8.6224 0.1611 19 6 0.9325 -8.6421 -1.4695 20 6 1.3590 -10.0274 -1.9590 21 6 0.6126 -11.1011 -1.1646 22 6 0.9466 -10.9603 0.3218 23 1 2.0201 -11.0820 0.4662 24 6 0.2109 -12.0174 1.1043 25 8 -0.5735 -11.6955 1.9651 26 8 0.4273 -13.3165 0.8451 27 6 0.5201 -9.5748 0.8113 28 6 1.7032 -3.6505 -0.0540 29 1 -0.4849 -0.8356 -0.0866 30 1 0.1492 -1.3837 1.9565 31 1 -0.8889 -3.4634 2.7463 32 1 1.9705 -6.1108 -0.8225 33 1 -0.1412 -8.5208 -1.6138 34 1 1.4638 -7.8769 -2.0354 35 1 2.4325 -10.1492 -1.8147 36 1 1.1215 -10.1276 -3.0181 37 1 0.9168 -12.0882 -1.5130 38 1 -0.4609 -10.9794 -1.3089 39 1 -0.0675 -13.9579 1.3732 40 1 0.7576 -9.4747 1.8703 41 1 -0.5535 -9.4531 0.6669 42 1 2.4286 -3.7427 -0.8487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833069400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:33 Heat of formation + Delta-G solvation = -120.354667 kcal Electronic energy + Delta-G solvation = -25970.844222 eV Core-core repulsion = 22107.446526 eV Total energy + Delta-G solvation = -3863.397696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93187 -39.94405 -38.49568 -37.27997 -36.35187 -34.71992 -33.72940 -31.81348 -31.14418 -30.52195 -28.57698 -25.76711 -24.80172 -24.12007 -22.06041 -21.73084 -21.45675 -20.18645 -19.59698 -18.27493 -18.16888 -17.46817 -16.40179 -16.05315 -15.95652 -15.28152 -14.94343 -14.53568 -14.44991 -14.17783 -14.10832 -13.90156 -13.83105 -13.35415 -12.91592 -12.85905 -12.73685 -12.48133 -12.20482 -11.89997 -11.79208 -11.62681 -11.45125 -11.19697 -11.04555 -10.98332 -10.70183 -10.53856 -10.44843 -10.42311 -9.93646 -9.81379 -9.38663 -9.18678 -8.20149 -7.83853 -7.36711 -7.12182 -4.70115 1.95628 2.38116 2.70702 2.75011 3.11628 3.17342 3.31642 3.37697 3.46752 3.96723 4.29778 4.36111 4.44039 4.61689 4.71966 4.83715 4.95741 5.01403 5.05018 5.15870 5.28031 5.34012 5.46297 5.62607 5.68347 5.69818 5.79630 5.88128 5.92896 6.05728 6.16225 6.27747 6.43439 6.44652 6.59892 6.71254 7.20634 7.25686 7.50747 7.60519 7.63366 7.85147 8.00505 8.15181 8.50729 8.68936 8.77460 9.52907 9.98951 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033930 B = 0.002432 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.031525 B =11509.776274 C =12064.760620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.040 3.960 3 Si 1.068 2.932 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.078 0.922 9 C 0.133 3.867 10 C -0.272 4.272 11 C 0.124 3.876 12 N -0.557 5.557 13 C 0.357 3.643 14 N -0.661 5.661 15 C 0.501 3.499 16 O -0.472 6.472 17 C -0.104 4.104 18 H 0.098 0.902 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.078 4.078 23 H 0.110 0.890 24 C 0.480 3.520 25 O -0.507 6.507 26 O -0.519 6.519 27 C -0.085 4.085 28 C -0.304 4.304 29 H 0.298 0.702 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.406 0.594 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.408 0.592 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -19.545 -5.294 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.182 4.182 3 Si 0.891 3.109 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.125 3.875 10 C -0.295 4.295 11 C -0.028 4.028 12 N -0.276 5.276 13 C 0.131 3.869 14 N -0.308 5.308 15 C 0.286 3.714 16 O -0.341 6.341 17 C -0.126 4.126 18 H 0.116 0.884 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.097 4.097 23 H 0.128 0.872 24 C 0.322 3.678 25 O -0.393 6.393 26 O -0.331 6.331 27 C -0.123 4.123 28 C -0.330 4.330 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.241 0.759 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.267 0.733 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.531 -18.291 -4.226 19.102 hybrid contribution 0.628 -1.387 -0.382 1.570 sum 4.158 -19.678 -4.609 20.634 Atomic orbital electron populations 1.70418 1.08180 1.34253 1.28768 1.27045 0.95673 1.04272 0.91214 0.83597 0.75603 0.73692 0.77997 1.20105 1.19797 1.19943 1.20490 1.02106 0.93336 1.39265 0.90344 1.17634 0.89193 0.92151 0.88551 1.22036 1.06584 0.98356 1.02548 1.21873 0.96637 0.87522 0.96800 1.67296 1.18597 1.27593 1.14143 1.18107 0.93096 0.83290 0.92442 1.43512 1.48808 1.04565 1.33871 1.20549 0.82156 0.85423 0.83313 1.90815 1.29372 1.86195 1.27755 1.21344 1.01958 0.92730 0.96572 0.88398 1.21610 1.02746 0.97681 0.93416 1.21521 1.00398 0.93586 0.99680 1.21566 1.01593 1.00200 0.91611 1.21096 1.01115 0.91839 0.95621 0.87177 1.23545 0.80235 0.82561 0.81493 1.90772 1.34261 1.82417 1.31889 1.84529 1.67066 1.17849 1.63643 1.21235 1.01700 0.89063 1.00294 1.21233 1.11347 0.92433 1.07984 0.88847 0.87111 0.85607 0.75920 0.90917 0.90927 0.91193 0.90816 0.90403 0.91137 0.73314 0.90040 0.89960 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.76 12.55 55.55 0.70 -20.06 16 2 C 0.04 1.00 5.00 -17.34 -0.09 0.92 16 3 Si 1.07 20.94 29.99 -169.99 -5.10 15.84 16 4 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.52 -13.44 9.03 -37.65 -0.34 -13.78 16 8 H 0.08 1.95 7.95 -52.49 -0.42 1.53 16 9 C 0.13 3.46 5.18 -106.55 -0.55 2.91 16 10 C -0.27 -6.95 8.08 -38.70 -0.31 -7.26 16 11 C 0.12 3.05 11.15 -17.68 -0.20 2.86 16 12 N -0.56 -14.09 7.85 -12.52 -0.10 -14.19 16 13 C 0.36 8.24 7.42 -154.71 -1.15 7.09 16 14 N -0.66 -11.72 5.31 -11.49 -0.06 -11.78 16 15 C 0.50 8.69 7.11 -10.99 -0.08 8.62 16 16 O -0.47 -10.56 14.24 5.56 0.08 -10.48 16 17 C -0.10 -1.18 2.54 -91.77 -0.23 -1.42 16 18 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -1.04 5.10 -26.73 -0.14 -1.18 16 20 C -0.11 -0.73 5.92 -26.73 -0.16 -0.89 16 21 C -0.11 -0.79 5.14 -26.73 -0.14 -0.93 16 22 C -0.08 -0.67 2.63 -91.77 -0.24 -0.92 16 23 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 24 C 0.48 4.87 7.63 36.01 0.27 5.15 16 25 O -0.51 -7.20 16.74 -18.75 -0.31 -7.51 16 26 O -0.52 -3.71 13.33 -39.24 -0.52 -4.23 16 27 C -0.09 -1.02 3.06 -26.73 -0.08 -1.11 16 28 C -0.30 -7.23 9.73 -38.48 -0.37 -7.60 16 29 H 0.30 8.08 6.81 -40.82 -0.28 7.81 16 30 H 0.11 2.86 7.01 -52.48 -0.37 2.49 16 31 H 0.13 2.78 8.06 -52.49 -0.42 2.36 16 32 H 0.41 5.49 7.97 -40.82 -0.33 5.17 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.41 1.36 9.10 45.56 0.41 1.77 16 40 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 41 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -34.69 351.52 -8.62 -43.31 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.80 Total: 11.36 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.80 Total: -7.55 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.54 Total: -46.03 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.76 Total: -22.23 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.10 Total: 15.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.69 -8.62 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.041 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds