Wall clock time and date at job start Tue Mar 31 2020 12:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86806 * 119.99577 * 2 1 4 4 H 1.48501 * 109.46850 * 240.00044 * 3 2 1 5 5 H 1.48500 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46846 * 120.00258 * 3 2 1 7 7 C 1.40027 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99887 * 156.78245 * 7 2 1 9 9 C 1.41542 * 120.00525 * 336.78354 * 7 2 1 10 10 C 1.41173 * 120.99124 * 328.48112 * 9 7 2 11 11 C 1.37595 * 119.01327 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.10623 * 359.97438 * 11 10 9 13 13 C 1.32466 * 122.23543 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.57864 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00347 * 354.56353 * 14 13 12 16 16 O 1.21278 * 119.99657 * 5.24202 * 15 14 13 17 17 C 1.50699 * 120.00142 * 185.24381 * 15 14 13 18 18 H 1.08993 * 109.47326 * 60.00025 * 17 15 14 19 19 C 1.52998 * 109.47167 * 299.99746 * 17 15 14 20 20 C 1.52996 * 109.47381 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.46880 * 60.00197 * 20 19 17 22 22 C 1.52991 * 109.47223 * 299.99992 * 21 20 19 23 23 H 1.09005 * 109.47552 * 300.00090 * 22 21 20 24 24 C 1.50704 * 109.47280 * 179.97438 * 22 21 20 25 25 O 1.20825 * 119.99857 * 239.99944 * 24 22 21 26 26 O 1.34223 * 119.99774 * 60.00344 * 24 22 21 27 27 C 1.53003 * 109.47357 * 59.99985 * 22 21 20 28 28 C 1.38596 * 120.83888 * 359.71559 * 13 12 11 29 29 H 0.97000 * 119.99380 * 174.08346 * 1 2 3 30 30 H 1.08006 * 120.49439 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.44445 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99769 * 174.56918 * 14 13 12 33 33 H 1.09005 * 109.47627 * 300.00278 * 19 17 15 34 34 H 1.08995 * 109.47021 * 60.00123 * 19 17 15 35 35 H 1.09001 * 109.47435 * 300.00606 * 20 19 17 36 36 H 1.08999 * 109.47350 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.47258 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47257 * 60.00534 * 21 20 19 39 39 H 0.96700 * 117.00461 * 179.97438 * 26 24 22 40 40 H 1.08992 * 109.47249 * 179.97438 * 27 22 21 41 41 H 1.09005 * 109.46703 * 59.99586 * 27 22 21 42 42 H 1.07998 * 120.60166 * 180.30831 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0220 -1.2507 -0.3682 9 6 1.3860 -2.3887 0.4843 10 6 0.4254 -2.3310 1.5172 11 6 -0.1530 -3.4995 1.9567 12 7 0.1761 -4.6645 1.4285 13 6 1.0710 -4.7727 0.4579 14 7 1.3763 -6.0312 -0.0599 15 6 0.8457 -7.1368 0.4992 16 8 0.0297 -7.0336 1.3904 17 6 1.2665 -8.5011 0.0169 18 1 2.3400 -8.6224 0.1611 19 6 0.9325 -8.6421 -1.4695 20 6 1.3590 -10.0274 -1.9590 21 6 0.6126 -11.1011 -1.1646 22 6 0.9466 -10.9603 0.3218 23 1 2.0201 -11.0820 0.4662 24 6 0.2109 -12.0174 1.1043 25 8 -0.5735 -11.6955 1.9651 26 8 0.4273 -13.3165 0.8451 27 6 0.5201 -9.5748 0.8113 28 6 1.7032 -3.6505 -0.0540 29 1 -0.4849 -0.8356 -0.0866 30 1 0.1492 -1.3837 1.9565 31 1 -0.8889 -3.4634 2.7463 32 1 1.9705 -6.1108 -0.8225 33 1 -0.1412 -8.5208 -1.6138 34 1 1.4638 -7.8769 -2.0354 35 1 2.4325 -10.1492 -1.8147 36 1 1.1215 -10.1276 -3.0181 37 1 0.9168 -12.0882 -1.5130 38 1 -0.4609 -10.9794 -1.3089 39 1 -0.0675 -13.9579 1.3732 40 1 0.7576 -9.4747 1.8703 41 1 -0.5535 -9.4531 0.6669 42 1 2.4286 -3.7427 -0.8487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833069400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:32 Heat of formation + Delta-G solvation = -143.357242 kcal Electronic energy + Delta-G solvation = -25971.841688 eV Core-core repulsion = 22107.446526 eV Total energy + Delta-G solvation = -3864.395162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88673 -41.26331 -40.03602 -38.39864 -37.11648 -36.51330 -35.45945 -32.73187 -32.46394 -31.91013 -30.31701 -27.70169 -25.56361 -25.29704 -23.92803 -23.11659 -22.31924 -21.32918 -20.67639 -19.99889 -19.08829 -18.62285 -17.73067 -17.37971 -16.84001 -16.47296 -16.40315 -16.27950 -15.82793 -15.67892 -15.29444 -15.01391 -14.89255 -14.60765 -14.58390 -14.17406 -13.88233 -13.69662 -13.47350 -13.35485 -12.81648 -12.63704 -12.48018 -12.39069 -12.25232 -11.98031 -11.87452 -11.74467 -11.64381 -11.53634 -11.45679 -11.18306 -11.03417 -10.85716 -10.17618 -9.71731 -9.30115 -8.97090 -6.70406 0.55423 0.85750 1.18009 1.53412 1.63110 1.81379 1.83931 1.91199 2.20777 2.33925 2.74082 3.35543 3.51063 3.64204 3.70816 3.81050 3.98631 4.06351 4.24292 4.33411 4.36831 4.38574 4.55053 4.61587 4.63737 4.67395 4.72042 4.83232 4.99883 5.03461 5.10277 5.16048 5.24817 5.26134 5.28573 5.42302 5.46711 5.53361 5.60940 5.71174 6.05138 6.11615 6.47964 6.55028 6.81206 6.97568 7.23750 7.69668 7.99358 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.033930 B = 0.002432 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.031525 B =11509.776274 C =12064.760620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.005 3.995 3 Si 1.121 2.879 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.085 0.915 9 C 0.107 3.893 10 C -0.286 4.286 11 C 0.118 3.882 12 N -0.580 5.580 13 C 0.356 3.644 14 N -0.648 5.648 15 C 0.496 3.504 16 O -0.529 6.529 17 C -0.088 4.088 18 H 0.136 0.864 19 C -0.116 4.116 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.071 4.071 23 H 0.143 0.857 24 C 0.485 3.515 25 O -0.559 6.559 26 O -0.506 6.506 27 C -0.081 4.081 28 C -0.310 4.310 29 H 0.281 0.719 30 H 0.099 0.901 31 H 0.143 0.857 32 H 0.427 0.573 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.426 0.574 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -21.126 -7.426 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.212 4.212 3 Si 0.937 3.063 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.310 4.310 11 C -0.034 4.034 12 N -0.300 5.300 13 C 0.128 3.872 14 N -0.296 5.296 15 C 0.284 3.716 16 O -0.402 6.402 17 C -0.109 4.109 18 H 0.153 0.847 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.090 4.090 23 H 0.160 0.840 24 C 0.329 3.671 25 O -0.450 6.450 26 O -0.319 6.319 27 C -0.120 4.120 28 C -0.335 4.335 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.160 0.840 32 H 0.267 0.733 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.287 0.713 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.279 -19.953 -6.415 21.879 hybrid contribution -0.260 -1.062 0.304 1.135 sum 6.019 -21.015 -6.111 22.698 Atomic orbital electron populations 1.70542 1.09077 1.33123 1.30822 1.28539 0.95593 1.07588 0.89439 0.82965 0.74681 0.69373 0.79301 1.17650 1.19892 1.18821 1.20755 1.02535 0.94013 1.40133 0.89691 1.18024 0.89609 0.93519 0.88934 1.21985 1.07564 0.98107 1.03321 1.22160 0.96786 0.87351 0.97118 1.67419 1.19675 1.27685 1.15265 1.18415 0.91939 0.85358 0.91520 1.43519 1.48874 1.02927 1.34323 1.21732 0.80720 0.87149 0.82048 1.90795 1.31904 1.87139 1.30325 1.21360 1.03634 0.87946 0.97929 0.84652 1.21668 1.01888 1.00433 0.91368 1.21520 1.01670 0.90859 1.00220 1.21596 1.01054 1.01839 0.90123 1.21108 1.02514 0.88987 0.96414 0.83958 1.23836 0.79195 0.83602 0.80504 1.90767 1.36658 1.83280 1.34278 1.84479 1.66889 1.16947 1.63565 1.21105 0.99898 0.91921 0.99057 1.21443 1.11749 0.91905 1.08428 0.90700 0.88256 0.84016 0.73345 0.92962 0.89288 0.88614 0.89094 0.88124 0.92577 0.71276 0.92846 0.93318 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.48 12.55 21.84 0.27 -43.21 16 2 C 0.01 0.27 5.00 85.29 0.43 0.69 16 3 Si 1.12 41.35 29.99 68.60 2.06 43.41 16 4 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 7 C -0.54 -28.19 9.03 23.52 0.21 -27.98 16 8 H 0.09 4.17 7.95 -2.91 -0.02 4.15 16 9 C 0.11 5.69 5.18 -21.12 -0.11 5.58 16 10 C -0.29 -15.16 8.08 22.84 0.18 -14.98 16 11 C 0.12 6.03 11.15 84.50 0.94 6.97 16 12 N -0.58 -30.10 7.85 -193.54 -1.52 -31.62 16 13 C 0.36 16.44 7.42 132.75 0.98 17.42 16 14 N -0.65 -22.30 5.31 -308.67 -1.64 -23.94 16 15 C 0.50 17.08 7.11 87.66 0.62 17.70 16 16 O -0.53 -24.52 14.24 -3.02 -0.04 -24.57 16 17 C -0.09 -1.82 2.54 -11.54 -0.03 -1.85 16 18 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 19 C -0.12 -1.74 5.10 30.59 0.16 -1.58 16 20 C -0.11 -0.87 5.92 30.59 0.18 -0.69 16 21 C -0.11 -1.16 5.14 30.59 0.16 -1.01 16 22 C -0.07 -1.08 2.63 -11.54 -0.03 -1.11 16 23 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 24 C 0.48 9.29 7.63 71.24 0.54 9.83 16 25 O -0.56 -16.35 16.74 21.97 0.37 -15.98 16 26 O -0.51 -5.97 13.33 -51.35 -0.68 -6.65 16 27 C -0.08 -1.96 3.06 30.60 0.09 -1.86 16 28 C -0.31 -14.68 9.73 22.98 0.22 -14.45 16 29 H 0.28 15.85 6.81 -92.71 -0.63 15.22 16 30 H 0.10 5.38 7.01 -2.91 -0.02 5.36 16 31 H 0.14 6.52 8.06 -2.91 -0.02 6.50 16 32 H 0.43 10.50 7.97 -92.71 -0.74 9.76 16 33 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 1.07 7.45 -2.39 -0.02 1.05 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.71 8.11 -2.38 -0.02 0.69 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.43 1.95 9.10 -74.06 -0.67 1.28 16 40 H 0.05 1.56 8.05 -2.39 -0.02 1.54 16 41 H 0.05 1.47 8.06 -2.38 -0.02 1.45 16 42 H 0.13 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -80.57 351.52 3.16 -77.41 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.21 Total: 32.44 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.56 Total: -7.30 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -2.89 Total: -98.76 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.36 Total: -47.20 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.06 Total: 43.41 kcal Total: -80.57 3.16 -77.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.947 kcal (2) G-P(sol) polarization free energy of solvation -80.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds