Wall clock time and date at job start Tue Mar 31 2020 12:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48499 * 109.47118 * 239.99774 * 3 2 1 5 5 H 1.48496 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46859 * 120.00056 * 3 2 1 7 7 C 1.40032 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00109 * 170.21308 * 7 2 1 9 9 C 1.41542 * 119.99993 * 350.49073 * 7 2 1 10 10 C 1.41175 * 120.99529 * 331.46570 * 9 7 2 11 11 C 1.37593 * 119.01667 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.10768 * 359.97438 * 11 10 9 13 13 C 1.32474 * 122.23096 * 0.02562 * 12 11 10 14 14 N 1.39464 * 119.57914 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99974 * 5.13492 * 14 13 12 16 16 O 1.21280 * 119.99807 * 354.98604 * 15 14 13 17 17 C 1.50702 * 120.00082 * 174.99345 * 15 14 13 18 18 H 1.09003 * 109.46612 * 299.99654 * 17 15 14 19 19 C 1.52995 * 109.47440 * 59.99479 * 17 15 14 20 20 C 1.53001 * 109.46987 * 59.99979 * 19 17 15 21 21 C 1.53001 * 109.46851 * 60.00182 * 20 19 17 22 22 C 1.53004 * 109.47070 * 299.99901 * 21 20 19 23 23 H 1.09002 * 109.46691 * 299.99763 * 22 21 20 24 24 C 1.50698 * 109.46854 * 180.02562 * 22 21 20 25 25 O 1.20831 * 119.99957 * 239.99642 * 24 22 21 26 26 O 1.34230 * 120.00400 * 60.00032 * 24 22 21 27 27 C 1.52991 * 109.47166 * 179.97438 * 17 15 14 28 28 C 1.38596 * 120.84044 * 359.73506 * 13 12 11 29 29 H 0.96993 * 120.00184 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.49316 * 359.96116 * 10 9 7 31 31 H 1.07995 * 119.44294 * 180.02562 * 11 10 9 32 32 H 0.97002 * 120.00148 * 185.13238 * 14 13 12 33 33 H 1.09002 * 109.47256 * 180.02562 * 19 17 15 34 34 H 1.09007 * 109.47025 * 300.00322 * 19 17 15 35 35 H 1.09001 * 109.47262 * 179.97438 * 20 19 17 36 36 H 1.09002 * 109.47293 * 300.00186 * 20 19 17 37 37 H 1.09002 * 109.47168 * 59.99928 * 21 20 19 38 38 H 1.09003 * 109.47199 * 179.97438 * 21 20 19 39 39 H 0.96698 * 117.00061 * 180.02562 * 26 24 22 40 40 H 1.09004 * 109.47240 * 59.99657 * 27 17 15 41 41 H 1.08993 * 109.47361 * 179.97438 * 27 17 15 42 42 H 1.08003 * 120.60129 * 180.28320 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0759 -1.2196 -0.1585 9 6 1.3145 -2.4300 0.2036 10 6 0.1268 -2.4720 0.9656 11 6 -0.5142 -3.6774 1.1366 12 7 -0.0366 -4.7863 0.6009 13 6 1.0734 -4.8006 -0.1221 14 7 1.5282 -6.0035 -0.6615 15 6 0.7871 -7.1221 -0.5341 16 8 -0.2299 -7.1038 0.1264 17 6 1.2221 -8.3956 -1.2125 18 1 1.2729 -8.2345 -2.2894 19 6 2.6015 -8.8049 -0.6925 20 6 2.5303 -9.0309 0.8191 21 6 1.5212 -10.1405 1.1218 22 6 0.1417 -9.7311 0.6017 23 1 -0.1729 -8.8100 1.0924 24 6 -0.8522 -10.8237 0.9004 25 8 -1.4432 -11.3664 -0.0031 26 8 -1.0812 -11.1940 2.1701 27 6 0.2134 -9.5052 -0.9093 28 6 1.7857 -3.6344 -0.3534 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2726 -1.5713 1.4079 31 1 -1.4235 -3.7174 1.7179 32 1 2.3779 -6.0353 -1.1283 33 1 2.9164 -9.7258 -1.1834 34 1 3.3204 -8.0144 -0.9081 35 1 3.5129 -9.3230 1.1896 36 1 2.2156 -8.1098 1.3098 37 1 1.8359 -11.0615 0.6311 38 1 1.4707 -10.3018 2.1986 39 1 -1.7272 -11.8995 2.3120 40 1 -0.7695 -9.2138 -1.2795 41 1 0.5278 -10.4261 -1.4003 42 1 2.6877 -3.6497 -0.9472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833069402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:43 Heat of formation + Delta-G solvation = -109.176959 kcal Electronic energy + Delta-G solvation = -26602.044439 eV Core-core repulsion = 22739.131445 eV Total energy + Delta-G solvation = -3862.912994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94313 -39.85541 -38.36021 -36.77414 -36.10961 -34.53021 -33.65979 -31.63392 -30.96047 -30.68099 -28.45799 -26.01071 -24.62469 -23.95393 -21.99840 -21.77705 -21.26465 -20.39385 -19.03806 -18.06442 -17.84535 -16.96116 -16.34042 -15.90483 -15.87957 -15.15530 -15.05354 -14.79364 -14.28192 -14.14091 -13.86551 -13.71055 -13.59849 -13.06055 -12.82923 -12.61181 -12.48251 -12.37546 -12.08081 -11.99153 -11.58012 -11.46863 -11.26394 -11.24066 -11.05786 -10.99486 -10.76014 -10.42006 -10.34228 -10.22098 -10.03073 -9.68826 -9.43974 -9.20582 -8.02754 -7.74819 -7.05560 -6.78162 -4.64847 2.20582 2.52402 2.75255 3.00749 3.01674 3.02894 3.14457 3.44195 3.52118 3.84968 4.48891 4.55216 4.63422 4.67931 4.91009 4.98052 5.08506 5.20719 5.30365 5.35717 5.45833 5.61330 5.65965 5.73453 5.81793 5.87950 5.97376 6.04786 6.07374 6.17390 6.26743 6.46108 6.55292 6.57957 6.75086 6.89903 7.11660 7.36717 7.47603 7.76195 7.86989 7.87586 8.16372 8.43705 8.65507 8.73024 8.82236 9.65313 10.09969 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002820 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.330031 B = 9926.599713 C =10402.092119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.147 3.853 10 C -0.218 4.218 11 C 0.101 3.899 12 N -0.550 5.550 13 C 0.346 3.654 14 N -0.659 5.659 15 C 0.504 3.496 16 O -0.477 6.477 17 C -0.110 4.110 18 H 0.102 0.898 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.094 4.094 23 H 0.142 0.858 24 C 0.488 3.512 25 O -0.523 6.523 26 O -0.516 6.516 27 C -0.079 4.079 28 C -0.300 4.300 29 H 0.283 0.717 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.405 0.595 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.405 0.595 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -15.299 0.025 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.138 3.862 10 C -0.241 4.241 11 C -0.050 4.050 12 N -0.269 5.269 13 C 0.118 3.882 14 N -0.305 5.305 15 C 0.289 3.711 16 O -0.348 6.348 17 C -0.132 4.132 18 H 0.120 0.880 19 C -0.150 4.150 20 C -0.161 4.161 21 C -0.144 4.144 22 C -0.113 4.113 23 H 0.159 0.841 24 C 0.331 3.669 25 O -0.411 6.411 26 O -0.327 6.327 27 C -0.117 4.117 28 C -0.326 4.326 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.805 -15.809 0.310 16.264 hybrid contribution 0.728 1.202 -0.462 1.479 sum 4.533 -14.608 -0.152 15.296 Atomic orbital electron populations 1.69737 1.07556 1.29523 1.35054 1.25940 0.94866 1.01415 0.92042 0.86252 0.79963 0.79849 0.79980 1.18946 1.20229 1.18766 1.19513 0.95706 0.90011 1.43811 0.90215 1.17587 0.90695 0.91501 0.86398 1.22261 0.99914 0.97923 1.04021 1.21918 0.97893 0.88154 0.97024 1.67224 1.13579 1.30410 1.15694 1.18033 0.92327 0.83780 0.94041 1.43496 1.23310 1.07464 1.56213 1.20570 0.84357 0.84371 0.81788 1.90701 1.23568 1.83420 1.37083 1.21455 0.96777 0.93426 1.01533 0.87987 1.21581 0.94891 1.02229 0.96348 1.21584 0.99153 0.99388 0.95950 1.21499 0.92570 0.98688 1.01664 1.21423 0.93143 0.97539 0.99187 0.84077 1.23685 0.81378 0.82212 0.79629 1.90686 1.49195 1.54346 1.46893 1.84574 1.61333 1.55927 1.30886 1.21158 0.99885 0.97470 0.93208 1.21260 1.05691 0.92831 1.12841 0.90596 0.85427 0.85912 0.76001 0.90629 0.91070 0.91019 0.91036 0.91718 0.90642 0.73691 0.90254 0.90649 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.86 10.83 55.55 0.60 -19.26 16 2 C 0.08 1.83 5.30 -17.34 -0.09 1.74 16 3 Si 0.92 17.91 29.57 -169.99 -5.03 12.88 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.63 9.12 -37.65 -0.34 -11.97 16 8 H 0.08 1.91 7.87 -52.48 -0.41 1.50 16 9 C 0.15 3.78 5.58 -106.55 -0.59 3.19 16 10 C -0.22 -5.58 8.75 -38.70 -0.34 -5.92 16 11 C 0.10 2.48 11.15 -17.68 -0.20 2.28 16 12 N -0.55 -13.57 7.85 -12.52 -0.10 -13.66 16 13 C 0.35 7.79 7.42 -154.71 -1.15 6.64 16 14 N -0.66 -11.33 5.31 -11.49 -0.06 -11.40 16 15 C 0.50 8.34 5.60 -10.98 -0.06 8.27 16 16 O -0.48 -9.83 11.91 5.56 0.07 -9.77 16 17 C -0.11 -1.26 3.02 -91.78 -0.28 -1.54 16 18 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.11 -1.01 5.35 -26.73 -0.14 -1.15 16 20 C -0.12 -1.24 5.70 -26.73 -0.15 -1.39 16 21 C -0.11 -1.08 5.13 -26.73 -0.14 -1.22 16 22 C -0.09 -1.20 2.33 -91.80 -0.21 -1.42 16 23 H 0.14 2.23 5.51 -51.93 -0.29 1.95 16 24 C 0.49 6.36 7.63 36.00 0.27 6.63 16 25 O -0.52 -8.04 16.74 -18.75 -0.31 -8.35 16 26 O -0.52 -5.43 13.33 -39.26 -0.52 -5.95 16 27 C -0.08 -0.98 3.66 -26.76 -0.10 -1.07 16 28 C -0.30 -7.01 9.73 -38.48 -0.37 -7.39 16 29 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 30 H 0.13 3.33 6.28 -52.49 -0.33 3.00 16 31 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 32 H 0.41 5.38 7.98 -40.82 -0.33 5.06 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.56 7.46 -51.93 -0.39 0.18 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.92 7.22 -51.93 -0.37 0.54 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.41 2.42 9.10 45.56 0.41 2.84 16 40 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 41 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -32.64 345.01 -8.68 -41.33 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -4.63 Total: 13.29 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.90 Total: -4.31 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.44 Total: -44.32 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.77 Total: -24.07 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.64 -8.68 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.849 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds