Wall clock time and date at job start Tue Mar 31 2020 12:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48499 * 109.47118 * 239.99774 * 3 2 1 5 5 H 1.48496 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46859 * 120.00056 * 3 2 1 7 7 C 1.40032 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00109 * 170.21308 * 7 2 1 9 9 C 1.41542 * 119.99993 * 350.49073 * 7 2 1 10 10 C 1.41175 * 120.99529 * 331.46570 * 9 7 2 11 11 C 1.37593 * 119.01667 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.10768 * 359.97438 * 11 10 9 13 13 C 1.32474 * 122.23096 * 0.02562 * 12 11 10 14 14 N 1.39464 * 119.57914 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99974 * 5.13492 * 14 13 12 16 16 O 1.21280 * 119.99807 * 354.98604 * 15 14 13 17 17 C 1.50702 * 120.00082 * 174.99345 * 15 14 13 18 18 H 1.09003 * 109.46612 * 299.99654 * 17 15 14 19 19 C 1.52995 * 109.47440 * 59.99479 * 17 15 14 20 20 C 1.53001 * 109.46987 * 59.99979 * 19 17 15 21 21 C 1.53001 * 109.46851 * 60.00182 * 20 19 17 22 22 C 1.53004 * 109.47070 * 299.99901 * 21 20 19 23 23 H 1.09002 * 109.46691 * 299.99763 * 22 21 20 24 24 C 1.50698 * 109.46854 * 180.02562 * 22 21 20 25 25 O 1.20831 * 119.99957 * 239.99642 * 24 22 21 26 26 O 1.34230 * 120.00400 * 60.00032 * 24 22 21 27 27 C 1.52991 * 109.47166 * 179.97438 * 17 15 14 28 28 C 1.38596 * 120.84044 * 359.73506 * 13 12 11 29 29 H 0.96993 * 120.00184 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.49316 * 359.96116 * 10 9 7 31 31 H 1.07995 * 119.44294 * 180.02562 * 11 10 9 32 32 H 0.97002 * 120.00148 * 185.13238 * 14 13 12 33 33 H 1.09002 * 109.47256 * 180.02562 * 19 17 15 34 34 H 1.09007 * 109.47025 * 300.00322 * 19 17 15 35 35 H 1.09001 * 109.47262 * 179.97438 * 20 19 17 36 36 H 1.09002 * 109.47293 * 300.00186 * 20 19 17 37 37 H 1.09002 * 109.47168 * 59.99928 * 21 20 19 38 38 H 1.09003 * 109.47199 * 179.97438 * 21 20 19 39 39 H 0.96698 * 117.00061 * 180.02562 * 26 24 22 40 40 H 1.09004 * 109.47240 * 59.99657 * 27 17 15 41 41 H 1.08993 * 109.47361 * 179.97438 * 27 17 15 42 42 H 1.08003 * 120.60129 * 180.28320 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0759 -1.2196 -0.1585 9 6 1.3145 -2.4300 0.2036 10 6 0.1268 -2.4720 0.9656 11 6 -0.5142 -3.6774 1.1366 12 7 -0.0366 -4.7863 0.6009 13 6 1.0734 -4.8006 -0.1221 14 7 1.5282 -6.0035 -0.6615 15 6 0.7871 -7.1221 -0.5341 16 8 -0.2299 -7.1038 0.1264 17 6 1.2221 -8.3956 -1.2125 18 1 1.2729 -8.2345 -2.2894 19 6 2.6015 -8.8049 -0.6925 20 6 2.5303 -9.0309 0.8191 21 6 1.5212 -10.1405 1.1218 22 6 0.1417 -9.7311 0.6017 23 1 -0.1729 -8.8100 1.0924 24 6 -0.8522 -10.8237 0.9004 25 8 -1.4432 -11.3664 -0.0031 26 8 -1.0812 -11.1940 2.1701 27 6 0.2134 -9.5052 -0.9093 28 6 1.7857 -3.6344 -0.3534 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2726 -1.5713 1.4079 31 1 -1.4235 -3.7174 1.7179 32 1 2.3779 -6.0353 -1.1283 33 1 2.9164 -9.7258 -1.1834 34 1 3.3204 -8.0144 -0.9081 35 1 3.5129 -9.3230 1.1896 36 1 2.2156 -8.1098 1.3098 37 1 1.8359 -11.0615 0.6311 38 1 1.4707 -10.3018 2.1986 39 1 -1.7272 -11.8995 2.3120 40 1 -0.7695 -9.2138 -1.2795 41 1 0.5278 -10.4261 -1.4003 42 1 2.6877 -3.6497 -0.9472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833069402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:42 Heat of formation + Delta-G solvation = -130.029530 kcal Electronic energy + Delta-G solvation = -26602.948674 eV Core-core repulsion = 22739.131445 eV Total energy + Delta-G solvation = -3863.817229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04973 -41.10578 -39.94454 -37.97652 -37.09781 -36.20732 -35.34149 -32.65862 -32.57495 -31.83749 -30.16216 -27.89841 -25.51975 -25.18211 -23.67320 -23.16073 -22.38515 -21.61570 -20.32750 -19.62064 -19.03032 -17.96259 -17.68899 -17.57196 -16.87246 -16.82431 -16.12964 -16.04414 -15.88256 -15.75545 -15.22359 -14.89148 -14.70581 -14.51269 -14.20983 -14.10210 -13.66858 -13.40972 -13.21903 -13.10533 -13.01271 -12.86877 -12.79972 -12.55772 -12.20756 -12.08784 -11.90860 -11.84707 -11.74982 -11.34533 -11.22219 -11.14946 -11.11129 -10.63598 -9.94034 -9.55387 -8.83702 -8.59353 -6.57946 0.77149 0.98319 1.18564 1.41141 1.53383 1.56049 1.95174 2.13434 2.15983 2.22837 2.84023 3.55946 3.62286 3.69494 3.75089 3.98904 4.08362 4.13743 4.25415 4.38877 4.46819 4.48517 4.65892 4.74937 4.77263 4.86380 4.94882 4.99103 5.00809 5.05163 5.11350 5.19139 5.24708 5.25497 5.29973 5.43605 5.47375 5.59019 5.68127 5.96974 6.15539 6.47044 6.65827 6.81001 6.84000 6.98545 7.37878 7.85756 8.30398 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.002820 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.330031 B = 9926.599713 C =10402.092119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.088 0.912 9 C 0.119 3.881 10 C -0.239 4.239 11 C 0.095 3.905 12 N -0.572 5.572 13 C 0.347 3.653 14 N -0.649 5.649 15 C 0.500 3.500 16 O -0.522 6.522 17 C -0.097 4.097 18 H 0.131 0.869 19 C -0.108 4.108 20 C -0.123 4.123 21 C -0.101 4.101 22 C -0.096 4.096 23 H 0.107 0.893 24 C 0.491 3.509 25 O -0.550 6.550 26 O -0.513 6.513 27 C -0.077 4.077 28 C -0.309 4.309 29 H 0.290 0.710 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.425 0.575 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.425 0.575 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 -16.418 -1.054 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.517 4.517 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.263 4.263 11 C -0.056 4.056 12 N -0.292 5.292 13 C 0.118 3.882 14 N -0.297 5.297 15 C 0.288 3.712 16 O -0.395 6.395 17 C -0.118 4.118 18 H 0.148 0.852 19 C -0.146 4.146 20 C -0.161 4.161 21 C -0.138 4.138 22 C -0.115 4.115 23 H 0.124 0.876 24 C 0.335 3.665 25 O -0.441 6.441 26 O -0.326 6.326 27 C -0.115 4.115 28 C -0.335 4.335 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.286 0.714 40 H 0.069 0.931 41 H 0.118 0.882 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.282 -16.977 -0.774 18.119 hybrid contribution -0.114 1.445 -0.070 1.451 sum 6.168 -15.533 -0.844 16.734 Atomic orbital electron populations 1.69814 1.09169 1.30891 1.35178 1.26878 0.95597 1.04811 0.90889 0.85113 0.78552 0.74986 0.80236 1.18045 1.19502 1.18248 1.19849 0.96262 0.90761 1.44859 0.89432 1.17996 0.91125 0.92938 0.86881 1.22197 1.00902 0.97774 1.05433 1.22161 0.98329 0.88080 0.97060 1.67345 1.14834 1.30285 1.16703 1.18335 0.91331 0.85642 0.92860 1.43499 1.24291 1.06057 1.55804 1.21601 0.83389 0.85384 0.80874 1.90699 1.25608 1.84197 1.38955 1.21502 0.98016 0.89799 1.02491 0.85167 1.21666 0.93098 1.04409 0.95408 1.21596 1.00064 0.97615 0.96786 1.21501 0.90880 0.99676 1.01745 1.21382 0.94726 0.95959 0.99472 0.87572 1.23744 0.80932 0.81913 0.79875 1.90672 1.50162 1.55497 1.47751 1.84532 1.61894 1.56675 1.29544 1.21161 0.98798 0.98630 0.92941 1.21466 1.06549 0.92441 1.13047 0.89921 0.86744 0.84636 0.73659 0.87192 0.89484 0.88618 0.94648 0.89311 0.90843 0.71383 0.93136 0.88216 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.12 10.83 21.84 0.24 -41.88 16 2 C 0.03 1.65 5.30 85.29 0.45 2.10 16 3 Si 0.99 36.26 29.57 68.60 2.03 38.29 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.49 -24.93 9.12 23.52 0.21 -24.71 16 8 H 0.09 4.19 7.87 -2.91 -0.02 4.17 16 9 C 0.12 6.29 5.58 -21.11 -0.12 6.17 16 10 C -0.24 -12.80 8.75 22.84 0.20 -12.60 16 11 C 0.09 4.85 11.15 84.50 0.94 5.79 16 12 N -0.57 -29.05 7.85 -193.54 -1.52 -30.57 16 13 C 0.35 15.78 7.42 132.75 0.98 16.76 16 14 N -0.65 -21.74 5.31 -308.65 -1.64 -23.38 16 15 C 0.50 16.27 5.60 87.66 0.49 16.76 16 16 O -0.52 -22.15 11.91 -3.03 -0.04 -22.18 16 17 C -0.10 -1.98 3.02 -11.54 -0.03 -2.02 16 18 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 19 C -0.11 -1.50 5.35 30.59 0.16 -1.34 16 20 C -0.12 -2.16 5.70 30.60 0.17 -1.98 16 21 C -0.10 -1.83 5.13 30.60 0.16 -1.67 16 22 C -0.10 -2.41 2.33 -11.56 -0.03 -2.44 16 23 H 0.11 3.51 5.51 -2.39 -0.01 3.49 16 24 C 0.49 12.55 7.63 71.24 0.54 13.10 16 25 O -0.55 -16.64 16.74 21.95 0.37 -16.28 16 26 O -0.51 -10.37 13.33 -51.41 -0.69 -11.06 16 27 C -0.08 -1.79 3.66 30.57 0.11 -1.68 16 28 C -0.31 -14.53 9.73 22.98 0.22 -14.31 16 29 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 30 H 0.11 6.29 6.28 -2.91 -0.02 6.27 16 31 H 0.14 6.30 8.06 -2.91 -0.02 6.27 16 32 H 0.42 10.36 7.98 -92.71 -0.74 9.62 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.99 7.46 -2.38 -0.02 0.97 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.03 0.88 7.22 -2.39 -0.02 0.86 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 39 H 0.42 4.59 9.10 -74.06 -0.67 3.92 16 40 H 0.05 1.45 8.06 -2.39 -0.02 1.43 16 41 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 42 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -74.40 345.01 2.90 -71.50 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.33 Total: 37.64 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.48 Total: -2.07 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -2.92 Total: -95.84 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.35 Total: -49.52 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -74.40 2.90 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.531 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds