Wall clock time and date at job start Tue Mar 31 2020 12:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86794 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47249 * 239.99851 * 3 2 1 5 5 H 1.48498 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47164 * 119.99890 * 3 2 1 7 7 C 1.38653 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00120 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00363 * 185.05391 * 9 7 2 11 11 C 1.39017 * 119.99404 * 174.43305 * 10 9 7 12 12 C 1.38210 * 120.24894 * 180.02562 * 11 10 9 13 13 C 1.38024 * 120.22941 * 359.74470 * 12 11 10 14 14 C 1.39717 * 119.97767 * 0.50981 * 13 12 11 15 15 C 1.47498 * 120.11974 * 179.76481 * 14 13 12 16 16 N 1.29748 * 120.00236 * 359.72196 * 15 14 13 17 17 N 1.40095 * 119.99803 * 179.97438 * 16 15 14 18 18 C 1.34783 * 119.99935 * 180.02562 * 17 16 15 19 19 O 1.21300 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99880 * 179.97438 * 18 17 16 21 21 H 1.08997 * 109.47775 * 55.03066 * 20 18 17 22 22 C 1.53086 * 109.48337 * 295.00119 * 20 18 17 23 23 C 1.53181 * 109.21454 * 182.36572 * 22 20 18 24 24 C 1.53315 * 108.96463 * 56.95673 * 23 22 20 25 25 C 1.53092 * 109.19254 * 303.05795 * 24 23 22 26 26 O 1.42903 * 109.41737 * 57.60806 * 25 24 23 27 27 C 1.38577 * 119.98830 * 354.46017 * 10 9 7 28 28 H 0.97000 * 119.99826 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.87957 * 0.04881 * 11 10 9 30 30 H 1.07994 * 119.88804 * 180.02562 * 12 11 10 31 31 H 1.07997 * 120.01068 * 180.27144 * 13 12 11 32 32 H 1.08003 * 119.99592 * 179.72682 * 15 14 13 33 33 H 0.97006 * 120.00717 * 0.02562 * 17 16 15 34 34 H 1.08997 * 109.52677 * 302.30549 * 22 20 18 35 35 H 1.09004 * 109.52191 * 62.43404 * 22 20 18 36 36 H 1.08994 * 109.54282 * 176.88075 * 23 22 20 37 37 H 1.09000 * 109.54271 * 297.14933 * 23 22 20 38 38 H 1.08996 * 109.50483 * 183.14204 * 24 23 22 39 39 H 1.08991 * 109.50432 * 62.97434 * 24 23 22 40 40 H 1.09005 * 109.48360 * 297.62244 * 25 24 23 41 41 H 1.09006 * 109.48738 * 177.60018 * 25 24 23 42 42 H 1.07994 * 120.11629 * 359.94875 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 1.4341 -4.7348 0.2306 12 6 2.1774 -5.8948 0.3405 13 6 3.5565 -5.8406 0.3237 14 6 4.2054 -4.6089 0.2059 15 6 5.6790 -4.5469 0.1927 16 7 6.3752 -5.6369 0.2961 17 7 7.7748 -5.5779 0.2831 18 6 8.4980 -6.7103 0.3900 19 8 7.9370 -7.7804 0.4969 20 6 10.0037 -6.6469 0.3754 21 1 10.3462 -5.9639 1.1527 22 6 10.4804 -6.1464 -0.9906 23 6 12.0120 -6.1406 -1.0189 24 6 12.5215 -7.5522 -0.7053 25 6 11.9658 -7.9984 0.6496 26 8 10.5380 -7.9501 0.6167 27 6 3.4540 -3.4378 0.0949 28 1 -0.4850 0.8401 -0.0004 29 1 0.3553 -4.7843 0.2399 30 1 1.6775 -6.8473 0.4354 31 1 4.1338 -6.7497 0.4054 32 1 6.1785 -3.5941 0.0971 33 1 8.2236 -4.7222 0.1971 34 1 10.1042 -6.8065 -1.7721 35 1 10.1092 -5.1353 -1.1579 36 1 12.3572 -5.8379 -2.0074 37 1 12.3878 -5.4429 -0.2705 38 1 13.6108 -7.5460 -0.6681 39 1 12.1865 -8.2406 -1.4810 40 1 12.3341 -7.3331 1.4306 41 1 12.2904 -9.0179 0.8579 42 1 3.9495 -2.4831 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834988561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:33 Heat of formation + Delta-G solvation = -44.030398 kcal Electronic energy + Delta-G solvation = -24969.718724 eV Core-core repulsion = 21109.630697 eV Total energy + Delta-G solvation = -3860.088027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.51587 -39.13453 -38.68458 -36.99491 -35.90040 -34.18759 -32.98218 -32.29100 -31.59533 -29.76897 -28.71208 -26.21094 -25.35652 -24.41201 -23.46046 -21.69622 -21.11674 -20.63180 -20.28070 -18.31850 -17.75991 -17.11042 -16.74843 -16.30859 -16.09087 -15.49449 -15.09297 -14.90171 -14.81446 -14.60576 -14.31913 -14.11468 -13.74982 -13.68021 -13.29428 -13.17176 -12.85581 -12.53641 -12.44712 -11.97655 -11.75192 -11.73364 -11.56036 -11.33668 -10.96329 -10.92352 -10.91266 -10.83696 -10.52154 -10.17711 -10.03985 -9.83120 -9.47118 -9.37143 -8.84886 -7.91949 -7.28653 -6.48287 -4.08501 1.16763 2.10884 2.26551 2.38788 2.97277 3.09018 3.11712 3.13465 3.48160 3.92243 4.08376 4.23820 4.29592 4.43911 4.52970 4.56384 4.61561 4.75819 4.90527 5.02841 5.04663 5.06081 5.17160 5.24278 5.26359 5.39467 5.50283 5.52640 5.65145 5.73717 5.75465 5.91556 6.12151 6.27446 6.58691 6.61563 6.72975 6.94475 7.01562 7.14360 7.22116 7.33198 7.53215 7.69515 7.94699 8.31010 8.96677 9.65914 10.69548 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.002284 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.996577 B =12258.570958 C =13606.995022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.168 4.168 12 C -0.086 4.086 13 C -0.162 4.162 14 C -0.026 4.026 15 C 0.135 3.865 16 N -0.240 5.240 17 N -0.585 5.585 18 C 0.535 3.465 19 O -0.483 6.483 20 C 0.083 3.917 21 H 0.087 0.913 22 C -0.149 4.149 23 C -0.121 4.121 24 C -0.160 4.160 25 C 0.060 3.940 26 O -0.353 6.353 27 C -0.200 4.200 28 H 0.271 0.729 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.381 0.619 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.101 0.899 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.621 -7.999 -0.684 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.093 3.907 11 C -0.189 4.189 12 C -0.104 4.104 13 C -0.183 4.183 14 C -0.028 4.028 15 C -0.075 4.075 16 N -0.044 5.044 17 N -0.329 5.329 18 C 0.319 3.681 19 O -0.352 6.352 20 C 0.020 3.980 21 H 0.104 0.896 22 C -0.187 4.187 23 C -0.158 4.158 24 C -0.198 4.198 25 C -0.017 4.017 26 O -0.271 6.271 27 C -0.222 4.222 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.219 0.781 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 22.849 -9.765 -0.498 24.853 hybrid contribution 1.202 2.507 -0.192 2.787 sum 24.050 -7.258 -0.690 25.131 Atomic orbital electron populations 1.70023 1.05942 1.27807 1.45845 1.25272 0.95836 0.98793 0.96550 0.85800 0.78736 0.79901 0.79090 1.19542 1.20283 1.19529 1.21224 0.91664 0.80845 1.53321 0.89189 1.84012 1.33953 1.11272 1.78817 1.19171 0.89833 0.88336 0.93379 1.20437 0.99923 0.90324 1.08167 1.20660 0.93538 0.97021 0.99204 1.20904 0.94221 0.96636 1.06568 1.17976 0.87896 0.93988 1.02969 1.24678 0.94658 0.93917 0.94228 1.75091 0.88499 1.26302 1.14513 1.46852 1.02808 1.09385 1.73839 1.19952 0.87845 0.83352 0.76908 1.90750 1.71978 1.28175 1.44298 1.21774 0.90452 0.87489 0.98268 0.89557 1.22187 0.97184 1.02511 0.96776 1.21614 0.94309 0.97110 1.02773 1.22258 1.01211 0.97442 0.98854 1.22697 0.80223 1.02686 0.96116 1.88076 1.20325 1.26229 1.92421 1.21185 0.93763 0.97616 1.09633 0.91932 0.86180 0.86458 0.86134 0.86686 0.78115 0.90003 0.90178 0.90709 0.91373 0.90480 0.90666 0.92841 0.88099 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.51 9.48 30.89 0.29 -10.21 16 8 H 0.09 2.16 5.20 -52.49 -0.27 1.89 16 9 O -0.18 -4.83 9.76 0.04 0.00 -4.83 16 10 C 0.15 3.36 6.64 -39.17 -0.26 3.10 16 11 C -0.17 -3.42 9.98 -39.30 -0.39 -3.81 16 12 C -0.09 -1.53 10.02 -39.67 -0.40 -1.93 16 13 C -0.16 -2.94 9.58 -39.11 -0.37 -3.31 16 14 C -0.03 -0.46 5.87 -105.07 -0.62 -1.08 16 15 C 0.14 2.02 10.75 -14.66 -0.16 1.87 16 16 N -0.24 -3.82 10.15 32.16 0.33 -3.50 16 17 N -0.59 -7.30 6.22 31.22 0.19 -7.11 16 18 C 0.53 7.37 7.30 -10.98 -0.08 7.29 16 19 O -0.48 -9.16 16.85 -14.31 -0.24 -9.40 16 20 C 0.08 0.79 3.05 -27.84 -0.09 0.70 16 21 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.15 -1.05 5.37 -26.59 -0.14 -1.19 16 23 C -0.12 -0.62 6.04 -26.47 -0.16 -0.78 16 24 C -0.16 -0.88 6.14 -26.52 -0.16 -1.04 16 25 C 0.06 0.41 6.84 37.20 0.25 0.66 16 26 O -0.35 -3.98 9.94 -55.08 -0.55 -4.53 16 27 C -0.20 -4.05 8.91 -38.95 -0.35 -4.39 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 2.14 7.55 -52.49 -0.40 1.74 16 32 H 0.12 1.33 8.02 -52.48 -0.42 0.91 16 33 H 0.38 3.16 8.50 -182.60 -1.55 1.61 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.43 7.99 -51.93 -0.41 0.01 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.13 2.56 5.63 -52.49 -0.30 2.27 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -34.57 361.37 -8.53 -43.09 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.71 Total: 3.16 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.72 Total: -13.16 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 1.28 Total: -34.42 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.79 Total: -18.76 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.57 -8.53 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834988561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.936 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds