Wall clock time and date at job start Tue Mar 31 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 119.99993 * 2 1 4 4 H 1.48508 * 109.46732 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47259 * 299.99518 * 3 2 1 6 6 H 1.48501 * 109.47075 * 60.00022 * 3 2 1 7 7 C 1.38654 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00396 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.35754 * 117.00547 * 185.05039 * 9 7 2 11 11 C 1.39017 * 119.99338 * 174.47301 * 10 9 7 12 12 C 1.38216 * 120.24583 * 179.97438 * 11 10 9 13 13 C 1.38020 * 120.22834 * 359.75250 * 12 11 10 14 14 C 1.39706 * 119.98112 * 0.50441 * 13 12 11 15 15 C 1.47497 * 120.12569 * 179.77004 * 14 13 12 16 16 N 1.29756 * 119.99842 * 359.72199 * 15 14 13 17 17 N 1.40098 * 119.99832 * 180.02562 * 16 15 14 18 18 C 1.34780 * 119.99709 * 180.02562 * 17 16 15 19 19 O 1.21303 * 119.99886 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00005 * 179.97438 * 18 17 16 21 21 H 1.08991 * 109.49289 * 304.97650 * 20 18 17 22 22 C 1.53097 * 109.47625 * 65.00304 * 20 18 17 23 23 C 1.53174 * 109.21367 * 177.62446 * 22 20 18 24 24 C 1.53178 * 109.03418 * 302.98363 * 23 22 20 25 25 C 1.53094 * 109.16303 * 56.98544 * 24 23 22 26 26 O 1.42903 * 109.41272 * 302.38927 * 25 24 23 27 27 C 1.38571 * 119.98960 * 354.45894 * 10 9 7 28 28 H 0.96999 * 119.99420 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.87773 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.88366 * 180.02562 * 12 11 10 31 31 H 1.07997 * 120.00918 * 180.27460 * 13 12 11 32 32 H 1.08002 * 120.00360 * 179.72127 * 15 14 13 33 33 H 0.96998 * 120.00639 * 359.97438 * 17 16 15 34 34 H 1.09005 * 109.52436 * 57.68449 * 22 20 18 35 35 H 1.08998 * 109.52161 * 297.55856 * 22 20 18 36 36 H 1.08994 * 109.54445 * 62.85260 * 23 22 20 37 37 H 1.09004 * 109.54495 * 183.12150 * 23 22 20 38 38 H 1.09005 * 109.52460 * 176.88775 * 24 23 22 39 39 H 1.09002 * 109.52580 * 297.07693 * 24 23 22 40 40 H 1.08993 * 109.48041 * 62.36954 * 25 24 23 41 41 H 1.09001 * 109.48080 * 182.41081 * 25 24 23 42 42 H 1.08004 * 120.11120 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5047 0.1076 11 6 1.4341 -4.7349 0.2297 12 6 2.1775 -5.8950 0.3385 13 6 3.5565 -5.8408 0.3214 14 6 4.2054 -4.6091 0.2045 15 6 5.6790 -4.5470 0.1911 16 7 6.3752 -5.6372 0.2934 17 7 7.7749 -5.5781 0.2812 18 6 8.4980 -6.7106 0.3870 19 8 7.9369 -7.7809 0.4922 20 6 10.0037 -6.6472 0.3733 21 1 10.3376 -6.1271 -0.5245 22 6 10.4941 -5.8934 1.6122 23 6 12.0258 -5.8840 1.6231 24 6 12.5345 -7.3283 1.5837 25 6 11.9666 -8.0276 0.3459 26 8 10.5391 -7.9735 0.3829 27 6 3.4539 -3.4379 0.0947 28 1 -0.4849 0.8401 -0.0004 29 1 0.3553 -4.7843 0.2388 30 1 1.6775 -6.8476 0.4327 31 1 4.1338 -6.7499 0.4022 32 1 6.1785 -3.5942 0.0961 33 1 8.2236 -4.7224 0.1959 34 1 10.1265 -6.3902 2.5102 35 1 10.1238 -4.8686 1.5854 36 1 12.3933 -5.3440 0.7505 37 1 12.3811 -5.3969 2.5312 38 1 13.6235 -7.3297 1.5353 39 1 12.2082 -7.8541 2.4810 40 1 12.3262 -7.5256 -0.5522 41 1 12.2908 -9.0682 0.3355 42 1 3.9495 -2.4830 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834988563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:37 Heat of formation + Delta-G solvation = -67.095418 kcal Electronic energy + Delta-G solvation = -24972.499990 eV Core-core repulsion = 21111.411789 eV Total energy + Delta-G solvation = -3861.088201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38080 -40.76537 -39.60757 -38.52114 -37.27869 -34.80903 -34.33533 -33.90312 -32.48919 -31.12680 -30.25998 -27.39730 -26.82035 -25.01455 -24.68469 -23.29127 -22.03704 -21.68475 -21.24766 -19.92645 -19.04640 -18.26649 -18.15216 -17.15466 -16.80171 -16.73733 -16.39468 -16.20813 -15.95535 -15.64720 -15.52593 -15.43962 -15.23416 -14.81367 -14.39030 -14.15939 -14.07996 -13.71775 -13.66243 -13.50286 -12.93897 -12.61186 -12.51106 -12.46448 -12.38725 -12.23856 -12.03988 -11.98419 -11.45673 -11.39992 -11.21842 -10.91789 -10.85327 -10.57654 -10.51986 -9.36741 -8.95703 -8.41992 -6.10415 -0.20371 0.70459 1.13855 1.15190 1.40428 1.48437 1.58397 1.76235 2.21510 2.78433 2.90069 3.21772 3.29980 3.50867 3.63114 3.66713 3.83099 3.94759 3.98249 4.00215 4.14017 4.26665 4.34498 4.36657 4.44382 4.60206 4.61262 4.75020 4.77911 4.82242 4.98424 5.05890 5.07068 5.13556 5.14781 5.20266 5.34470 5.60104 5.65350 5.66034 5.90463 6.05206 6.10008 6.12802 6.44241 7.02775 7.28179 7.82415 8.81286 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.002292 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.643034 B =12211.069574 C =13604.583072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.018 2.982 4 H -0.244 1.244 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.410 4.410 8 H 0.109 0.891 9 O -0.229 6.229 10 C 0.112 3.888 11 C -0.181 4.181 12 C -0.075 4.075 13 C -0.157 4.157 14 C -0.022 4.022 15 C 0.137 3.863 16 N -0.269 5.269 17 N -0.570 5.570 18 C 0.530 3.470 19 O -0.545 6.545 20 C 0.089 3.911 21 H 0.121 0.879 22 C -0.145 4.145 23 C -0.117 4.117 24 C -0.159 4.159 25 C 0.052 3.948 26 O -0.393 6.393 27 C -0.198 4.198 28 H 0.271 0.729 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.154 0.846 33 H 0.407 0.593 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.699 -7.269 1.271 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.166 1.166 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.127 0.873 9 O -0.136 6.136 10 C 0.062 3.938 11 C -0.201 4.201 12 C -0.093 4.093 13 C -0.178 4.178 14 C -0.025 4.025 15 C -0.073 4.073 16 N -0.073 5.073 17 N -0.315 5.315 18 C 0.318 3.682 19 O -0.418 6.418 20 C 0.027 3.973 21 H 0.138 0.862 22 C -0.183 4.183 23 C -0.154 4.154 24 C -0.196 4.196 25 C -0.023 4.023 26 O -0.312 6.312 27 C -0.220 4.220 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.171 0.829 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 26.993 -9.058 1.430 28.509 hybrid contribution 0.089 1.992 -0.084 1.996 sum 27.082 -7.066 1.346 28.021 Atomic orbital electron populations 1.70200 1.08135 1.28634 1.49064 1.26595 0.96805 1.02826 0.96019 0.84531 0.78669 0.74862 0.78185 1.16648 1.19818 1.19871 1.21900 0.92739 0.81180 1.52796 0.87333 1.83986 1.35689 1.12456 1.81447 1.19685 0.91258 0.88086 0.94807 1.20656 1.00378 0.90455 1.08598 1.21003 0.93524 0.97502 0.97288 1.21191 0.94486 0.97116 1.05010 1.18178 0.89908 0.93030 1.01336 1.24572 0.93002 0.95421 0.94257 1.74959 0.90773 1.27592 1.13976 1.46669 1.01467 1.10535 1.72838 1.20971 0.89698 0.82517 0.75019 1.90719 1.73435 1.30417 1.47268 1.21909 0.86941 0.86491 1.01981 0.86201 1.22213 0.98708 1.01316 0.96107 1.21619 0.92545 0.96823 1.04462 1.22238 1.02402 0.96471 0.98515 1.22944 0.78145 1.02938 0.98313 1.88044 1.22858 1.25021 1.95288 1.21239 0.92798 0.98733 1.09233 0.92000 0.86183 0.83017 0.85320 0.82924 0.75216 0.92235 0.88002 0.89368 0.89660 0.88307 0.92230 0.90894 0.87784 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.67 21.61 0.30 -54.72 16 2 C -0.03 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 40.46 29.55 68.60 2.03 42.48 16 4 H -0.24 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.41 -22.42 9.48 67.92 0.64 -21.78 16 8 H 0.11 5.25 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.10 9.76 -22.77 -0.22 -13.33 16 10 C 0.11 5.27 6.64 22.54 0.15 5.42 16 11 C -0.18 -7.42 9.98 22.45 0.22 -7.20 16 12 C -0.08 -2.58 10.02 22.21 0.22 -2.35 16 13 C -0.16 -5.42 9.58 22.57 0.22 -5.21 16 14 C -0.02 -0.76 5.87 -20.16 -0.12 -0.88 16 15 C 0.14 3.74 10.75 87.44 0.94 4.68 16 16 N -0.27 -7.95 10.15 -52.15 -0.53 -8.48 16 17 N -0.57 -12.71 6.23 -173.51 -1.08 -13.79 16 18 C 0.53 13.85 7.30 87.66 0.64 14.49 16 19 O -0.54 -20.74 16.85 15.82 0.27 -20.47 16 20 C 0.09 1.47 3.06 29.88 0.09 1.57 16 21 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 22 C -0.15 -1.64 5.37 30.68 0.16 -1.48 16 23 C -0.12 -0.79 6.03 30.71 0.19 -0.60 16 24 C -0.16 -1.33 6.14 30.69 0.19 -1.14 16 25 C 0.05 0.61 6.84 72.01 0.49 1.10 16 26 O -0.39 -8.40 9.95 -130.06 -1.29 -9.69 16 27 C -0.20 -7.93 8.91 22.67 0.20 -7.73 16 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 30 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.13 4.32 7.55 -2.91 -0.02 4.29 16 32 H 0.15 2.91 8.02 -2.91 -0.02 2.89 16 33 H 0.41 5.14 8.50 -213.32 -1.81 3.33 16 34 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.10 0.68 7.99 -2.39 -0.02 0.66 16 36 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.14 5.25 5.63 -2.91 -0.02 5.23 16 Total: -1.00 -81.06 361.38 3.41 -77.65 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.76 Total: 22.36 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.71 Total: -22.01 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.31 Total: -76.99 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.25 Total: -43.49 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -81.06 3.41 -77.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834988563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.554 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds