Wall clock time and date at job start Tue Mar 31 2020 12:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00412 * 2 1 4 4 H 1.48499 * 109.47181 * 269.99984 * 3 2 1 5 5 H 1.48509 * 109.46842 * 29.99591 * 3 2 1 6 6 H 1.48492 * 109.47535 * 149.99473 * 3 2 1 7 7 C 1.39937 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99572 * 196.79392 * 7 2 1 9 9 C 1.41408 * 120.00192 * 16.79637 * 7 2 1 10 10 C 1.40780 * 120.20786 * 25.17706 * 9 7 2 11 11 C 1.37650 * 119.89709 * 179.97438 * 10 9 7 12 12 C 1.38514 * 120.32859 * 359.97438 * 11 10 9 13 13 C 1.39307 * 120.42210 * 359.97438 * 12 11 10 14 14 N 1.39743 * 119.95215 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99629 * 145.76402 * 14 13 12 16 16 O 1.21375 * 120.00388 * 354.89621 * 15 14 13 17 17 C 1.49359 * 119.99692 * 174.89177 * 15 14 13 18 18 O 1.21358 * 120.00048 * 0.02562 * 17 15 14 19 19 N 1.34777 * 119.99990 * 180.02562 * 17 15 14 20 20 O 1.41596 * 120.00019 * 180.02562 * 19 17 15 21 21 C 1.42897 * 114.00129 * 179.97438 * 20 19 17 22 22 C 1.54895 * 110.48532 * 88.24312 * 21 20 19 23 23 C 1.55235 * 102.58736 * 156.68009 * 22 21 20 24 24 C 1.54262 * 104.23333 * 322.08206 * 23 22 21 25 25 C 1.53871 * 106.59621 * 23.61264 * 24 23 22 26 26 C 1.38339 * 120.09227 * 0.28014 * 13 12 11 27 27 H 0.97003 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.05430 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.83779 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.79315 * 180.02562 * 12 11 10 31 31 H 0.97003 * 120.00178 * 325.77390 * 14 13 12 32 32 H 0.97000 * 120.00058 * 0.02562 * 19 17 15 33 33 H 1.09008 * 110.43765 * 325.70663 * 21 20 19 34 34 H 1.09004 * 110.75125 * 275.06742 * 22 21 20 35 35 H 1.08994 * 110.75521 * 38.43732 * 22 21 20 36 36 H 1.09000 * 110.46591 * 203.39254 * 23 22 21 37 37 H 1.08999 * 110.58254 * 80.83222 * 23 22 21 38 38 H 1.09000 * 110.03500 * 264.32892 * 24 23 22 39 39 H 1.08996 * 110.07469 * 142.92040 * 24 23 22 40 40 H 1.09007 * 110.03650 * 240.71555 * 25 24 23 41 41 H 1.09011 * 110.07477 * 119.30921 * 25 24 23 42 42 H 1.08005 * 120.16274 * 179.74891 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0078 -1.2119 0.0005 8 1 3.0533 -1.2318 0.2708 9 6 1.3460 -2.4106 -0.3528 10 6 0.2108 -2.3742 -1.1847 11 6 -0.4282 -3.5449 -1.5250 12 6 0.0403 -4.7601 -1.0535 13 6 1.1631 -4.8119 -0.2304 14 7 1.6270 -6.0432 0.2402 15 6 2.9488 -6.2454 0.4091 16 8 3.7419 -5.3931 0.0658 17 6 3.4376 -7.5183 1.0187 18 8 2.6446 -8.3706 1.3616 19 7 4.7593 -7.7203 1.1881 20 8 5.2228 -8.9272 1.7656 21 6 6.6446 -9.0064 1.8841 22 6 7.1114 -8.3950 3.2285 23 6 8.4827 -9.0858 3.4564 24 6 8.2680 -10.5293 2.9563 25 6 7.0993 -10.4787 1.9567 26 6 1.8156 -3.6456 0.1269 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1576 -1.4293 -1.5559 29 1 -1.2992 -3.5159 -2.1629 30 1 -0.4675 -5.6735 -1.3263 31 1 0.9977 -6.7524 0.4452 32 1 5.3931 -7.0389 0.9144 33 1 7.1252 -8.4995 1.0472 34 1 7.2299 -7.3149 3.1411 35 1 6.4150 -8.6447 4.0289 36 1 8.7394 -9.0833 4.5157 37 1 9.2617 -8.5925 2.8750 38 1 8.0157 -11.1807 3.7930 39 1 9.1684 -10.8911 2.4601 40 1 6.2798 -11.1057 2.3082 41 1 7.4320 -10.8156 0.9747 42 1 2.6837 -3.6840 0.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835214959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:49 Heat of formation + Delta-G solvation = -48.831647 kcal Electronic energy + Delta-G solvation = -25400.059428 eV Core-core repulsion = 21539.763204 eV Total energy + Delta-G solvation = -3860.296225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55343 -39.27680 -38.38372 -37.18285 -36.24482 -34.68986 -33.13995 -32.12629 -29.90293 -29.17248 -28.59607 -27.88897 -25.40458 -24.56830 -21.54981 -21.38239 -20.99338 -20.77385 -19.74905 -18.77296 -18.23256 -17.32789 -16.47878 -16.06612 -15.86145 -15.54616 -15.36042 -15.02242 -14.73298 -14.53309 -14.07071 -13.83197 -13.67228 -13.11805 -13.00510 -12.90939 -12.66236 -12.24615 -11.77853 -11.69065 -11.57523 -11.52742 -11.31496 -11.29686 -11.17918 -11.01870 -10.94572 -10.86247 -10.50627 -10.15791 -9.74195 -9.53128 -9.15553 -9.14076 -9.09824 -7.52978 -7.05068 -6.77283 -4.39628 1.38924 1.46860 2.71813 2.86475 3.07109 3.11226 3.17347 3.40524 3.49118 3.92647 4.03125 4.08692 4.17769 4.50590 4.56177 4.59743 4.78834 4.98208 5.00573 5.11351 5.18176 5.41744 5.48253 5.62701 5.63501 5.68445 5.74725 5.88462 6.17622 6.32512 6.50145 6.51848 6.68629 6.93300 6.94830 6.99510 7.18689 7.38220 7.60079 7.82043 7.85961 8.00796 8.03607 8.10673 8.37572 8.60514 8.86688 8.90584 10.16703 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002572 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.595509 B =10885.488810 C =12277.162830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.166 4.166 11 C -0.091 4.091 12 C -0.253 4.253 13 C 0.144 3.856 14 N -0.627 5.627 15 C 0.512 3.488 16 O -0.497 6.497 17 C 0.522 3.478 18 O -0.506 6.506 19 N -0.572 5.572 20 O -0.130 6.130 21 C 0.051 3.949 22 C -0.150 4.150 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.209 4.209 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.413 0.587 32 H 0.421 0.579 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 -14.348 3.716 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.186 4.186 11 C -0.110 4.110 12 C -0.274 4.274 13 C 0.053 3.947 14 N -0.272 5.272 15 C 0.291 3.709 16 O -0.372 6.372 17 C 0.303 3.697 18 O -0.379 6.379 19 N -0.276 5.276 20 O -0.134 6.134 21 C -0.007 4.007 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.230 4.230 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.263 0.737 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.259 -14.375 3.835 19.278 hybrid contribution 0.562 0.648 0.082 0.862 sum 12.822 -13.726 3.916 19.187 Atomic orbital electron populations 1.69817 1.07550 1.29264 1.35226 1.25916 0.94763 1.01354 0.92223 0.86280 0.80486 0.80434 0.79344 1.19239 1.20330 1.18586 1.19586 0.97819 0.90865 1.40400 0.90247 1.17475 0.90968 0.91544 0.88412 1.21401 0.99131 0.96963 1.01100 1.20481 0.98585 0.92537 0.99446 1.20076 1.01867 0.97232 1.08244 1.17432 0.96717 0.82500 0.98096 1.43055 1.05930 1.15876 1.62362 1.19428 0.84137 0.86248 0.81056 1.90834 1.54374 1.44199 1.47746 1.20367 0.81018 0.88221 0.80053 1.90767 1.54087 1.44463 1.48550 1.47162 1.06786 1.11831 1.61792 1.90607 1.22059 1.20531 1.80196 1.23682 0.80486 0.98367 0.98210 1.23135 0.97528 1.00472 0.97637 1.22338 0.96773 0.95333 1.01698 1.22093 0.97750 0.97401 0.98677 1.22123 0.98681 0.93868 1.00651 1.20968 1.04385 0.90943 1.06719 0.90825 0.86139 0.88722 0.88849 0.75107 0.73695 0.89591 0.90758 0.90026 0.91031 0.91204 0.91186 0.91215 0.90039 0.90503 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 10.94 55.55 0.61 -19.59 16 2 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 9 C 0.12 3.18 5.57 -106.85 -0.59 2.58 16 10 C -0.17 -4.25 8.69 -38.84 -0.34 -4.58 16 11 C -0.09 -2.08 10.01 -39.69 -0.40 -2.48 16 12 C -0.25 -5.47 9.97 -39.08 -0.39 -5.86 16 13 C 0.14 3.20 6.25 -83.82 -0.52 2.68 16 14 N -0.63 -11.64 5.32 -10.34 -0.05 -11.69 16 15 C 0.51 9.21 7.61 -11.63 -0.09 9.13 16 16 O -0.50 -10.02 14.23 5.47 0.08 -9.94 16 17 C 0.52 8.40 8.03 -11.63 -0.09 8.31 16 18 O -0.51 -9.16 16.89 -12.69 -0.21 -9.37 16 19 N -0.57 -7.62 6.37 30.88 0.20 -7.42 16 20 O -0.13 -1.66 10.82 -29.65 -0.32 -1.98 16 21 C 0.05 0.45 3.49 -25.07 -0.09 0.36 16 22 C -0.15 -1.19 6.65 -24.55 -0.16 -1.36 16 23 C -0.12 -0.75 6.84 -24.89 -0.17 -0.92 16 24 C -0.12 -0.70 6.80 -25.62 -0.17 -0.87 16 25 C -0.11 -0.82 6.56 -25.62 -0.17 -0.99 16 26 C -0.21 -5.23 8.39 -38.67 -0.32 -5.55 16 27 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.41 6.64 8.30 -40.82 -0.34 6.30 16 32 H 0.42 4.75 7.91 -40.82 -0.32 4.43 16 33 H 0.09 0.64 7.97 -51.92 -0.41 0.23 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.11 2.69 6.48 -52.48 -0.34 2.35 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -30.28 358.74 -8.79 -39.07 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.51 Total: 12.25 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.94 Total: -10.28 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.75 Total: -38.70 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.46 Total: -21.30 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.28 -8.79 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835214959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.763 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds