Wall clock time and date at job start Tue Mar 31 2020 12:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86795 * 120.00412 * 2 1 4 4 H 1.48499 * 109.47181 * 269.99984 * 3 2 1 5 5 H 1.48509 * 109.46842 * 29.99591 * 3 2 1 6 6 H 1.48492 * 109.47535 * 149.99473 * 3 2 1 7 7 C 1.39937 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99572 * 196.79392 * 7 2 1 9 9 C 1.41408 * 120.00192 * 16.79637 * 7 2 1 10 10 C 1.40780 * 120.20786 * 25.17706 * 9 7 2 11 11 C 1.37650 * 119.89709 * 179.97438 * 10 9 7 12 12 C 1.38514 * 120.32859 * 359.97438 * 11 10 9 13 13 C 1.39307 * 120.42210 * 359.97438 * 12 11 10 14 14 N 1.39743 * 119.95215 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99629 * 145.76402 * 14 13 12 16 16 O 1.21375 * 120.00388 * 354.89621 * 15 14 13 17 17 C 1.49359 * 119.99692 * 174.89177 * 15 14 13 18 18 O 1.21358 * 120.00048 * 0.02562 * 17 15 14 19 19 N 1.34777 * 119.99990 * 180.02562 * 17 15 14 20 20 O 1.41596 * 120.00019 * 180.02562 * 19 17 15 21 21 C 1.42897 * 114.00129 * 179.97438 * 20 19 17 22 22 C 1.54895 * 110.48532 * 88.24312 * 21 20 19 23 23 C 1.55235 * 102.58736 * 156.68009 * 22 21 20 24 24 C 1.54262 * 104.23333 * 322.08206 * 23 22 21 25 25 C 1.53871 * 106.59621 * 23.61264 * 24 23 22 26 26 C 1.38339 * 120.09227 * 0.28014 * 13 12 11 27 27 H 0.97003 * 120.00107 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.05430 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.83779 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.79315 * 180.02562 * 12 11 10 31 31 H 0.97003 * 120.00178 * 325.77390 * 14 13 12 32 32 H 0.97000 * 120.00058 * 0.02562 * 19 17 15 33 33 H 1.09008 * 110.43765 * 325.70663 * 21 20 19 34 34 H 1.09004 * 110.75125 * 275.06742 * 22 21 20 35 35 H 1.08994 * 110.75521 * 38.43732 * 22 21 20 36 36 H 1.09000 * 110.46591 * 203.39254 * 23 22 21 37 37 H 1.08999 * 110.58254 * 80.83222 * 23 22 21 38 38 H 1.09000 * 110.03500 * 264.32892 * 24 23 22 39 39 H 1.08996 * 110.07469 * 142.92040 * 24 23 22 40 40 H 1.09007 * 110.03650 * 240.71555 * 25 24 23 41 41 H 1.09011 * 110.07477 * 119.30921 * 25 24 23 42 42 H 1.08005 * 120.16274 * 179.74891 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0078 -1.2119 0.0005 8 1 3.0533 -1.2318 0.2708 9 6 1.3460 -2.4106 -0.3528 10 6 0.2108 -2.3742 -1.1847 11 6 -0.4282 -3.5449 -1.5250 12 6 0.0403 -4.7601 -1.0535 13 6 1.1631 -4.8119 -0.2304 14 7 1.6270 -6.0432 0.2402 15 6 2.9488 -6.2454 0.4091 16 8 3.7419 -5.3931 0.0658 17 6 3.4376 -7.5183 1.0187 18 8 2.6446 -8.3706 1.3616 19 7 4.7593 -7.7203 1.1881 20 8 5.2228 -8.9272 1.7656 21 6 6.6446 -9.0064 1.8841 22 6 7.1114 -8.3950 3.2285 23 6 8.4827 -9.0858 3.4564 24 6 8.2680 -10.5293 2.9563 25 6 7.0993 -10.4787 1.9567 26 6 1.8156 -3.6456 0.1269 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1576 -1.4293 -1.5559 29 1 -1.2992 -3.5159 -2.1629 30 1 -0.4675 -5.6735 -1.3263 31 1 0.9977 -6.7524 0.4452 32 1 5.3931 -7.0389 0.9144 33 1 7.1252 -8.4995 1.0472 34 1 7.2299 -7.3149 3.1411 35 1 6.4150 -8.6447 4.0289 36 1 8.7394 -9.0833 4.5157 37 1 9.2617 -8.5925 2.8750 38 1 8.0157 -11.1807 3.7930 39 1 9.1684 -10.8911 2.4601 40 1 6.2798 -11.1057 2.3082 41 1 7.4320 -10.8156 0.9747 42 1 2.6837 -3.6840 0.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835214959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:48 Heat of formation + Delta-G solvation = -66.670858 kcal Electronic energy + Delta-G solvation = -25400.832994 eV Core-core repulsion = 21539.763204 eV Total energy + Delta-G solvation = -3861.069791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00235 -40.37280 -39.54912 -38.87649 -37.17247 -36.36239 -34.91409 -33.26949 -31.78395 -30.31652 -29.73752 -28.60880 -27.29647 -26.02382 -23.15669 -22.72221 -22.17907 -21.53928 -21.09264 -20.00040 -19.63737 -18.85484 -17.80668 -17.46036 -17.18912 -16.76416 -16.55527 -16.46884 -16.18610 -15.84253 -15.38044 -15.11359 -14.70563 -14.67458 -14.35202 -14.04011 -13.83028 -13.57352 -13.32163 -13.09465 -13.04450 -12.89196 -12.70993 -12.18683 -12.18243 -12.11936 -12.02553 -11.90728 -11.71988 -11.54485 -11.36523 -11.21743 -10.94987 -10.74469 -10.22047 -9.42455 -8.86052 -8.62767 -6.36975 0.01876 0.25163 0.95258 1.07088 1.39170 1.51772 1.52256 2.00646 2.05966 2.22258 2.72763 3.08879 3.27420 3.48677 3.56200 3.70955 3.89503 4.20713 4.41365 4.44381 4.45115 4.48800 4.59591 4.67262 4.83319 4.85021 4.97441 5.01467 5.06672 5.08117 5.09667 5.16743 5.19374 5.28863 5.40183 5.47414 5.52522 5.73159 5.80371 6.04548 6.07448 6.26722 6.30414 6.62873 6.72838 6.83876 6.94712 6.99561 8.33299 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002572 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.595509 B =10885.488810 C =12277.162830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.090 3.910 10 C -0.191 4.191 11 C -0.089 4.089 12 C -0.244 4.244 13 C 0.150 3.850 14 N -0.622 5.622 15 C 0.516 3.484 16 O -0.520 6.520 17 C 0.532 3.468 18 O -0.527 6.527 19 N -0.556 5.556 20 O -0.145 6.145 21 C 0.040 3.960 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.232 4.232 27 H 0.290 0.710 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.427 0.573 32 H 0.430 0.570 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 -15.414 3.505 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.527 4.527 8 H 0.087 0.913 9 C 0.087 3.913 10 C -0.211 4.211 11 C -0.108 4.108 12 C -0.265 4.265 13 C 0.058 3.942 14 N -0.269 5.269 15 C 0.297 3.703 16 O -0.395 6.395 17 C 0.313 3.687 18 O -0.402 6.402 19 N -0.260 5.260 20 O -0.149 6.149 21 C -0.017 4.017 22 C -0.190 4.190 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.253 4.253 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.266 0.734 32 H 0.274 0.726 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.183 -15.475 3.631 20.650 hybrid contribution 0.328 0.805 0.163 0.885 sum 13.511 -14.669 3.794 20.301 Atomic orbital electron populations 1.69851 1.08779 1.30645 1.35402 1.26713 0.95576 1.04315 0.91211 0.85204 0.78965 0.75933 0.79605 1.18508 1.18958 1.18626 1.19762 0.97722 0.92367 1.42804 0.91291 1.17813 0.91936 0.92329 0.89244 1.21382 0.99818 0.97632 1.02268 1.20836 0.98962 0.91948 0.99066 1.20491 1.01118 0.98334 1.06573 1.17477 0.96375 0.83055 0.97320 1.42935 1.06631 1.15037 1.62296 1.19749 0.83696 0.86692 0.80204 1.90829 1.54947 1.45261 1.48495 1.19726 0.81799 0.87054 0.80123 1.90762 1.54806 1.44794 1.49859 1.46952 1.06155 1.12508 1.60354 1.90620 1.24709 1.19529 1.80052 1.24075 0.78509 0.99923 0.99219 1.23138 0.98491 1.00655 0.96732 1.22342 0.95659 0.95321 1.02394 1.22102 0.97699 0.97257 0.98478 1.22181 0.98835 0.92307 1.01838 1.20957 1.04817 0.91833 1.07693 0.89963 0.87515 0.85639 0.85055 0.73448 0.72571 0.87979 0.90830 0.91426 0.90409 0.90170 0.90929 0.89591 0.91149 0.89248 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.68 10.94 21.82 0.24 -42.44 16 2 C 0.04 1.88 5.16 85.25 0.44 2.32 16 3 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -27.58 9.05 23.46 0.21 -27.37 16 8 H 0.07 3.80 7.90 -2.91 -0.02 3.77 16 9 C 0.09 4.96 5.57 -21.31 -0.12 4.84 16 10 C -0.19 -9.96 8.69 22.75 0.20 -9.76 16 11 C -0.09 -3.97 10.01 22.20 0.22 -3.74 16 12 C -0.24 -10.10 9.97 22.59 0.23 -9.87 16 13 C 0.15 6.62 6.25 38.16 0.24 6.86 16 14 N -0.62 -22.57 5.32 -304.97 -1.62 -24.19 16 15 C 0.52 18.41 7.61 87.24 0.66 19.08 16 16 O -0.52 -21.15 14.23 -3.33 -0.05 -21.20 16 17 C 0.53 16.76 8.03 87.24 0.70 17.46 16 18 O -0.53 -18.62 16.89 14.11 0.24 -18.38 16 19 N -0.56 -14.36 6.37 -174.56 -1.11 -15.47 16 20 O -0.15 -3.56 10.82 -21.39 -0.23 -3.79 16 21 C 0.04 0.65 3.49 31.67 0.11 0.76 16 22 C -0.15 -2.26 6.65 32.01 0.21 -2.05 16 23 C -0.12 -1.21 6.84 31.79 0.22 -0.99 16 24 C -0.12 -1.09 6.80 31.32 0.21 -0.87 16 25 C -0.11 -1.42 6.56 31.32 0.21 -1.22 16 26 C -0.23 -11.93 8.39 22.86 0.19 -11.74 16 27 H 0.29 13.51 8.30 -92.71 -0.77 12.75 16 28 H 0.11 5.76 6.17 -2.91 -0.02 5.74 16 29 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.43 13.05 8.30 -92.71 -0.77 12.28 16 32 H 0.43 9.35 7.91 -92.71 -0.73 8.62 16 33 H 0.10 1.33 7.97 -2.38 -0.02 1.31 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 1.06 8.07 -2.38 -0.02 1.04 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.09 4.94 6.48 -2.91 -0.02 4.92 16 Total: -1.00 -66.73 358.74 2.99 -63.74 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.43 Total: 37.39 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 3.93 Total: -16.30 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.50 Total: -82.10 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.04 Total: -43.37 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -66.73 2.99 -63.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835214959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.933 kcal (2) G-P(sol) polarization free energy of solvation -66.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds