Wall clock time and date at job start Tue Mar 31 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47473 * 300.00089 * 3 2 1 6 6 H 1.48505 * 109.46926 * 60.00518 * 3 2 1 7 7 C 1.39935 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99111 * 196.79913 * 7 2 1 9 9 C 1.41407 * 120.00240 * 16.80034 * 7 2 1 10 10 C 1.40780 * 120.20748 * 25.17217 * 9 7 2 11 11 C 1.37653 * 119.89341 * 179.97438 * 10 9 7 12 12 C 1.38505 * 120.33050 * 0.02562 * 11 10 9 13 13 C 1.39299 * 120.42770 * 359.97438 * 12 11 10 14 14 N 1.39742 * 119.95812 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99794 * 145.76224 * 14 13 12 16 16 O 1.21370 * 120.00535 * 354.89057 * 15 14 13 17 17 C 1.49360 * 119.99464 * 174.89206 * 15 14 13 18 18 O 1.21354 * 120.00527 * 0.02562 * 17 15 14 19 19 N 1.34779 * 119.99464 * 179.97438 * 17 15 14 20 20 O 1.41599 * 119.99486 * 180.02562 * 19 17 15 21 21 C 1.42905 * 113.99584 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.46781 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.46879 * 179.97438 * 22 21 20 24 24 C 1.52994 * 117.49973 * 243.74539 * 23 22 21 25 25 C 1.53006 * 117.49712 * 175.08647 * 23 22 21 26 26 C 1.38346 * 120.08856 * 0.25337 * 13 12 11 27 27 H 0.97004 * 119.99573 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.05347 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83222 * 180.02562 * 11 10 9 30 30 H 1.08009 * 119.78821 * 180.02562 * 12 11 10 31 31 H 0.96995 * 119.99619 * 325.76560 * 14 13 12 32 32 H 0.96994 * 120.00088 * 0.02562 * 19 17 15 33 33 H 1.08993 * 109.47568 * 60.00077 * 21 20 19 34 34 H 1.09000 * 109.47300 * 299.99416 * 21 20 19 35 35 H 1.08997 * 109.47492 * 300.00004 * 22 21 20 36 36 H 1.09003 * 109.47411 * 60.00012 * 22 21 20 37 37 H 1.08997 * 115.54856 * 29.42349 * 23 22 21 38 38 H 1.09001 * 117.50253 * 0.02562 * 24 23 22 39 39 H 1.09002 * 117.49820 * 145.02456 * 24 23 22 40 40 H 1.08998 * 117.49673 * 214.98221 * 25 23 22 41 41 H 1.08996 * 117.49630 * 0.02562 * 25 23 22 42 42 H 1.08000 * 120.15952 * 179.74364 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2698 9 6 1.3461 -2.4102 -0.3550 10 6 0.2109 -2.3731 -1.1868 11 6 -0.4280 -3.5436 -1.5283 12 6 0.0400 -4.7590 -1.0571 13 6 1.1620 -4.8116 -0.2332 14 7 1.6253 -6.0432 0.2371 15 6 2.9470 -6.2457 0.4068 16 8 3.7405 -5.3935 0.0645 17 6 3.4351 -7.5190 1.0161 18 8 2.6418 -8.3714 1.3580 19 7 4.7567 -7.7218 1.1854 20 8 5.2195 -8.9291 1.7626 21 6 6.6413 -9.0086 1.8821 22 6 7.0258 -10.3474 2.5152 23 6 8.5481 -10.4328 2.6426 24 6 9.2641 -11.5220 1.8415 25 6 9.1296 -11.6523 3.3608 26 6 1.8148 -3.6455 0.1248 27 1 -0.4850 0.8401 0.0004 28 1 -0.1576 -1.4278 -1.5572 29 1 -1.2985 -3.5140 -2.1668 30 1 -0.4679 -5.6721 -1.3308 31 1 0.9958 -6.7522 0.4413 32 1 5.3908 -7.0407 0.9118 33 1 6.9992 -8.1936 2.5110 34 1 7.0940 -8.9305 0.8936 35 1 6.5732 -10.4251 3.5037 36 1 6.6678 -11.1628 1.8866 37 1 9.0633 -9.4807 2.7699 38 1 8.6507 -12.1775 1.2234 39 1 10.2506 -11.2866 1.4420 40 1 10.0277 -11.5025 3.9601 41 1 8.4277 -12.3938 3.7420 42 1 2.6823 -3.6846 0.7668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835362125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:59 Heat of formation + Delta-G solvation = -18.278321 kcal Electronic energy + Delta-G solvation = -24791.637164 eV Core-core repulsion = 20932.665831 eV Total energy + Delta-G solvation = -3858.971333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55176 -38.94778 -38.28983 -37.25383 -37.11430 -34.74231 -33.21909 -32.77574 -30.49256 -29.90366 -28.52339 -25.41314 -24.73635 -23.89767 -22.81696 -21.56282 -21.04262 -20.81841 -19.86030 -18.81071 -18.10668 -17.25261 -16.52988 -16.38706 -15.98103 -15.59489 -15.43259 -15.08276 -14.77873 -14.63535 -14.22581 -14.00010 -13.71892 -13.19710 -12.99296 -12.92897 -12.41281 -12.24750 -11.98544 -11.81736 -11.78265 -11.54224 -11.32013 -11.27767 -11.16191 -10.96187 -10.79671 -10.50167 -10.38771 -10.15920 -9.75239 -9.53397 -9.19772 -9.14856 -9.10652 -7.53034 -7.05322 -6.77608 -4.39651 1.34059 1.45353 2.70789 2.85749 3.07328 3.13139 3.16043 3.27102 3.39745 3.48204 3.92587 4.01516 4.35123 4.40626 4.47096 4.55120 4.59402 4.64434 4.75221 4.90445 5.10058 5.19352 5.38989 5.45451 5.51837 5.63324 5.66175 5.79411 6.17376 6.32277 6.42815 6.50580 6.67365 6.92523 6.94536 6.99197 7.18433 7.37632 7.59853 7.80447 7.85681 8.00321 8.03279 8.10165 8.37135 8.60442 8.86584 8.90428 10.16382 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.002190 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.141974 B =12780.983995 C =14030.561641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.166 4.166 11 C -0.091 4.091 12 C -0.253 4.253 13 C 0.143 3.857 14 N -0.627 5.627 15 C 0.512 3.488 16 O -0.497 6.497 17 C 0.523 3.477 18 O -0.505 6.505 19 N -0.572 5.572 20 O -0.140 6.140 21 C 0.032 3.968 22 C -0.081 4.081 23 C -0.154 4.154 24 C -0.180 4.180 25 C -0.176 4.176 26 C -0.209 4.209 27 H 0.280 0.720 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.413 0.587 32 H 0.422 0.578 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.016 -15.533 3.440 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.186 4.186 11 C -0.110 4.110 12 C -0.274 4.274 13 C 0.052 3.948 14 N -0.272 5.272 15 C 0.292 3.708 16 O -0.371 6.371 17 C 0.304 3.696 18 O -0.378 6.378 19 N -0.276 5.276 20 O -0.144 6.144 21 C -0.046 4.046 22 C -0.120 4.120 23 C -0.172 4.172 24 C -0.217 4.217 25 C -0.213 4.213 26 C -0.230 4.230 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.697 -15.551 3.550 20.388 hybrid contribution 0.637 0.656 0.086 0.918 sum 13.334 -14.895 3.636 20.319 Atomic orbital electron populations 1.69828 1.07557 1.29166 1.35302 1.25919 0.94760 1.01369 0.92225 0.86248 0.81055 0.80833 0.78533 1.18346 1.19685 1.20002 1.19609 0.97828 0.90869 1.40308 0.90217 1.17481 0.90969 0.91551 0.88435 1.21399 0.99107 0.96962 1.01086 1.20479 0.98587 0.92530 0.99441 1.20073 1.01880 0.97239 1.08209 1.17435 0.96749 0.82488 0.98124 1.43051 1.05920 1.15867 1.62369 1.19405 0.84148 0.86207 0.81070 1.90835 1.54328 1.44183 1.47748 1.20381 0.80953 0.88247 0.80009 1.90767 1.54042 1.44474 1.48497 1.47095 1.06809 1.11681 1.61969 1.90564 1.22366 1.20731 1.80776 1.23081 0.80719 0.99443 1.01324 1.21009 0.93368 0.95534 1.02056 1.22139 0.94126 0.94897 1.06061 1.23109 1.02211 1.02093 0.94270 1.22997 1.03103 1.00163 0.95046 1.20969 1.04387 0.90940 1.06691 0.90879 0.86143 0.88722 0.88843 0.75099 0.73616 0.91525 0.91489 0.90082 0.90375 0.87347 0.88517 0.88651 0.88557 0.88531 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.18 10.94 55.55 0.61 -19.57 16 2 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 8 H 0.08 2.07 7.90 -52.48 -0.41 1.66 16 9 C 0.12 3.16 5.57 -106.85 -0.59 2.57 16 10 C -0.17 -4.23 8.69 -38.83 -0.34 -4.57 16 11 C -0.09 -2.07 10.01 -39.70 -0.40 -2.47 16 12 C -0.25 -5.46 9.97 -39.09 -0.39 -5.85 16 13 C 0.14 3.18 6.25 -83.82 -0.52 2.66 16 14 N -0.63 -11.61 5.32 -10.34 -0.05 -11.66 16 15 C 0.51 9.20 7.61 -11.63 -0.09 9.11 16 16 O -0.50 -9.99 14.23 5.48 0.08 -9.91 16 17 C 0.52 8.39 8.03 -11.63 -0.09 8.30 16 18 O -0.50 -9.12 16.89 -12.69 -0.21 -9.34 16 19 N -0.57 -7.59 6.38 30.88 0.20 -7.39 16 20 O -0.14 -1.77 11.11 -29.65 -0.33 -2.10 16 21 C 0.03 0.26 6.19 37.16 0.23 0.49 16 22 C -0.08 -0.57 5.87 -26.73 -0.16 -0.73 16 23 C -0.15 -0.91 5.73 -90.62 -0.52 -1.43 16 24 C -0.18 -0.99 10.18 -26.70 -0.27 -1.27 16 25 C -0.18 -0.96 10.26 -26.69 -0.27 -1.23 16 26 C -0.21 -5.21 8.39 -38.66 -0.32 -5.54 16 27 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 28 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.41 6.61 8.30 -40.82 -0.34 6.27 16 32 H 0.42 4.69 8.01 -40.82 -0.33 4.36 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 37 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.10 0.53 8.03 -51.93 -0.42 0.11 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 2.68 6.48 -52.49 -0.34 2.34 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -30.47 366.83 -8.90 -39.37 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.51 Total: 12.19 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -4.17 Total: -10.65 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.75 Total: -38.63 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.47 Total: -21.35 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.47 -8.90 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835362125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.089 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds