Wall clock time and date at job start Tue Mar 31 2020 12:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47473 * 300.00089 * 3 2 1 6 6 H 1.48505 * 109.46926 * 60.00518 * 3 2 1 7 7 C 1.39935 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99111 * 196.79913 * 7 2 1 9 9 C 1.41407 * 120.00240 * 16.80034 * 7 2 1 10 10 C 1.40780 * 120.20748 * 25.17217 * 9 7 2 11 11 C 1.37653 * 119.89341 * 179.97438 * 10 9 7 12 12 C 1.38505 * 120.33050 * 0.02562 * 11 10 9 13 13 C 1.39299 * 120.42770 * 359.97438 * 12 11 10 14 14 N 1.39742 * 119.95812 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99794 * 145.76224 * 14 13 12 16 16 O 1.21370 * 120.00535 * 354.89057 * 15 14 13 17 17 C 1.49360 * 119.99464 * 174.89206 * 15 14 13 18 18 O 1.21354 * 120.00527 * 0.02562 * 17 15 14 19 19 N 1.34779 * 119.99464 * 179.97438 * 17 15 14 20 20 O 1.41599 * 119.99486 * 180.02562 * 19 17 15 21 21 C 1.42905 * 113.99584 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.46781 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.46879 * 179.97438 * 22 21 20 24 24 C 1.52994 * 117.49973 * 243.74539 * 23 22 21 25 25 C 1.53006 * 117.49712 * 175.08647 * 23 22 21 26 26 C 1.38346 * 120.08856 * 0.25337 * 13 12 11 27 27 H 0.97004 * 119.99573 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.05347 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83222 * 180.02562 * 11 10 9 30 30 H 1.08009 * 119.78821 * 180.02562 * 12 11 10 31 31 H 0.96995 * 119.99619 * 325.76560 * 14 13 12 32 32 H 0.96994 * 120.00088 * 0.02562 * 19 17 15 33 33 H 1.08993 * 109.47568 * 60.00077 * 21 20 19 34 34 H 1.09000 * 109.47300 * 299.99416 * 21 20 19 35 35 H 1.08997 * 109.47492 * 300.00004 * 22 21 20 36 36 H 1.09003 * 109.47411 * 60.00012 * 22 21 20 37 37 H 1.08997 * 115.54856 * 29.42349 * 23 22 21 38 38 H 1.09001 * 117.50253 * 0.02562 * 24 23 22 39 39 H 1.09002 * 117.49820 * 145.02456 * 24 23 22 40 40 H 1.08998 * 117.49673 * 214.98221 * 25 23 22 41 41 H 1.08996 * 117.49630 * 0.02562 * 25 23 22 42 42 H 1.08000 * 120.15952 * 179.74364 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2698 9 6 1.3461 -2.4102 -0.3550 10 6 0.2109 -2.3731 -1.1868 11 6 -0.4280 -3.5436 -1.5283 12 6 0.0400 -4.7590 -1.0571 13 6 1.1620 -4.8116 -0.2332 14 7 1.6253 -6.0432 0.2371 15 6 2.9470 -6.2457 0.4068 16 8 3.7405 -5.3935 0.0645 17 6 3.4351 -7.5190 1.0161 18 8 2.6418 -8.3714 1.3580 19 7 4.7567 -7.7218 1.1854 20 8 5.2195 -8.9291 1.7626 21 6 6.6413 -9.0086 1.8821 22 6 7.0258 -10.3474 2.5152 23 6 8.5481 -10.4328 2.6426 24 6 9.2641 -11.5220 1.8415 25 6 9.1296 -11.6523 3.3608 26 6 1.8148 -3.6455 0.1248 27 1 -0.4850 0.8401 0.0004 28 1 -0.1576 -1.4278 -1.5572 29 1 -1.2985 -3.5140 -2.1668 30 1 -0.4679 -5.6721 -1.3308 31 1 0.9958 -6.7522 0.4413 32 1 5.3908 -7.0407 0.9118 33 1 6.9992 -8.1936 2.5110 34 1 7.0940 -8.9305 0.8936 35 1 6.5732 -10.4251 3.5037 36 1 6.6678 -11.1628 1.8866 37 1 9.0633 -9.4807 2.7699 38 1 8.6507 -12.1775 1.2234 39 1 10.2506 -11.2866 1.4420 40 1 10.0277 -11.5025 3.9601 41 1 8.4277 -12.3938 3.7420 42 1 2.6823 -3.6846 0.7668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835362125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:58 Heat of formation + Delta-G solvation = -35.888461 kcal Electronic energy + Delta-G solvation = -24792.400797 eV Core-core repulsion = 20932.665831 eV Total energy + Delta-G solvation = -3859.734966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99831 -40.24955 -39.14611 -38.84939 -38.01101 -36.42467 -34.94051 -33.87379 -31.78271 -31.30017 -30.25449 -27.29748 -26.13204 -24.63580 -23.23014 -23.15903 -22.71561 -21.61816 -21.20553 -20.14511 -19.58859 -18.70398 -17.75071 -17.51534 -17.35751 -16.77805 -16.73894 -16.47317 -16.30452 -15.83777 -15.38125 -15.19309 -14.82338 -14.70036 -14.59414 -14.02800 -13.85176 -13.56758 -13.13218 -13.05874 -13.01927 -12.87367 -12.72032 -12.40105 -12.34360 -12.17858 -12.04838 -11.91720 -11.55125 -11.27380 -11.18781 -10.94801 -10.86829 -10.73466 -10.26764 -9.41945 -8.85663 -8.62696 -6.36569 0.01686 0.22470 0.95122 1.07250 1.39357 1.50028 1.54474 2.00667 2.04564 2.22461 2.72907 2.84648 3.08984 3.30249 3.71287 3.76406 3.90928 3.95725 4.10801 4.20135 4.30826 4.44788 4.56386 4.59973 4.78732 4.83183 4.85654 4.93722 5.04647 5.07070 5.08525 5.10070 5.25851 5.29046 5.29513 5.40978 5.49556 5.72888 5.80303 6.04921 6.07870 6.27059 6.30446 6.63152 6.72255 6.83984 6.95063 6.99887 8.33509 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.002190 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.141974 B =12780.983995 C =14030.561641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.089 3.911 10 C -0.190 4.190 11 C -0.089 4.089 12 C -0.244 4.244 13 C 0.149 3.851 14 N -0.622 5.622 15 C 0.516 3.484 16 O -0.520 6.520 17 C 0.533 3.467 18 O -0.526 6.526 19 N -0.557 5.557 20 O -0.155 6.155 21 C 0.025 3.975 22 C -0.076 4.076 23 C -0.158 4.158 24 C -0.182 4.182 25 C -0.177 4.177 26 C -0.231 4.231 27 H 0.290 0.710 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.427 0.573 32 H 0.432 0.568 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.664 -16.477 3.342 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.526 4.526 8 H 0.087 0.913 9 C 0.086 3.914 10 C -0.210 4.210 11 C -0.108 4.108 12 C -0.265 4.265 13 C 0.057 3.943 14 N -0.269 5.269 15 C 0.297 3.703 16 O -0.395 6.395 17 C 0.314 3.686 18 O -0.401 6.401 19 N -0.260 5.260 20 O -0.160 6.160 21 C -0.051 4.051 22 C -0.115 4.115 23 C -0.176 4.176 24 C -0.219 4.219 25 C -0.214 4.214 26 C -0.252 4.252 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.266 0.734 32 H 0.276 0.724 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.368 -16.528 3.457 21.537 hybrid contribution 0.494 0.760 0.133 0.916 sum 13.862 -15.768 3.590 21.300 Atomic orbital electron populations 1.69859 1.08779 1.30578 1.35493 1.26714 0.95574 1.04323 0.91228 0.85168 0.79253 0.76231 0.79111 1.18606 1.18547 1.18923 1.19780 0.97713 0.92379 1.42735 0.91293 1.17820 0.91944 0.92342 0.89276 1.21375 0.99785 0.97615 1.02243 1.20831 0.98960 0.91945 0.99067 1.20490 1.01131 0.98338 1.06529 1.17481 0.96407 0.83067 0.97353 1.42930 1.06640 1.15015 1.62310 1.19728 0.83694 0.86665 0.80211 1.90831 1.54901 1.45259 1.48497 1.19727 0.81752 0.87066 0.80080 1.90763 1.54773 1.44795 1.49789 1.46873 1.06194 1.12370 1.60555 1.90572 1.25088 1.19725 1.80593 1.23392 0.78511 1.00609 1.02601 1.20988 0.94240 0.94632 1.01611 1.22128 0.93234 0.95507 1.06745 1.23179 1.02501 1.01778 0.94398 1.23079 1.03364 0.99747 0.95164 1.20958 1.04818 0.91813 1.07646 0.89977 0.87550 0.85654 0.85043 0.73430 0.72404 0.90167 0.90134 0.90453 0.90692 0.86629 0.88591 0.87925 0.87732 0.88503 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.63 10.94 21.82 0.24 -42.39 16 2 C 0.04 1.86 5.16 85.25 0.44 2.30 16 3 Si 0.98 38.58 29.59 68.60 2.03 40.61 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.50 -27.52 9.05 23.46 0.21 -27.31 16 8 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 9 C 0.09 4.91 5.57 -21.31 -0.12 4.80 16 10 C -0.19 -9.89 8.69 22.75 0.20 -9.69 16 11 C -0.09 -3.95 10.01 22.20 0.22 -3.73 16 12 C -0.24 -10.05 9.97 22.59 0.23 -9.82 16 13 C 0.15 6.55 6.25 38.16 0.24 6.79 16 14 N -0.62 -22.40 5.32 -304.98 -1.62 -24.02 16 15 C 0.52 18.26 7.61 87.24 0.66 18.92 16 16 O -0.52 -20.98 14.23 -3.31 -0.05 -21.03 16 17 C 0.53 16.57 8.03 87.24 0.70 17.27 16 18 O -0.53 -18.38 16.89 14.13 0.24 -18.14 16 19 N -0.56 -14.07 6.38 -174.56 -1.11 -15.19 16 20 O -0.16 -3.68 11.11 -21.39 -0.24 -3.92 16 21 C 0.03 0.37 6.19 71.98 0.45 0.82 16 22 C -0.08 -0.96 5.87 30.60 0.18 -0.78 16 23 C -0.16 -1.60 5.73 -10.79 -0.06 -1.66 16 24 C -0.18 -1.71 10.18 30.62 0.31 -1.40 16 25 C -0.18 -1.64 10.26 30.62 0.31 -1.32 16 26 C -0.23 -11.85 8.39 22.86 0.19 -11.66 16 27 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 28 H 0.11 5.73 6.17 -2.91 -0.02 5.72 16 29 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.43 12.93 8.30 -92.71 -0.77 12.16 16 32 H 0.43 9.05 8.01 -92.71 -0.74 8.31 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 37 H 0.12 1.01 8.08 -2.39 -0.02 0.99 16 38 H 0.10 0.91 8.03 -2.39 -0.02 0.89 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 4.94 6.48 -2.91 -0.02 4.92 16 Total: -1.00 -66.68 366.83 3.21 -63.47 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.44 Total: 37.08 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.16 Total: -16.47 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.50 Total: -81.60 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.05 Total: -43.09 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -66.68 3.21 -63.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835362125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.583 kcal (2) G-P(sol) polarization free energy of solvation -66.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds