Wall clock time and date at job start Tue Mar 31 2020 13:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31687 * 119.71618 * 2 1 4 4 C 1.31934 * 121.88051 * 180.27746 * 3 2 1 5 5 C 1.50704 * 119.45052 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49597 * 163.60195 * 5 4 3 7 7 C 1.53001 * 60.00116 * 252.51175 * 6 5 4 8 8 C 1.38355 * 121.09569 * 0.02562 * 4 3 2 9 9 C 1.38346 * 119.30651 * 359.97438 * 8 4 3 10 10 C 1.39566 * 119.72178 * 180.27360 * 2 1 3 11 11 C 1.47721 * 120.56389 * 359.74347 * 10 2 1 12 12 O 1.21467 * 119.99781 * 353.87461 * 11 10 2 13 13 O 1.34712 * 120.00090 * 173.87284 * 11 10 2 14 14 C 1.45199 * 117.00008 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47153 * 179.97438 * 14 13 11 16 16 O 1.21278 * 119.99808 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99980 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99584 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46798 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00125 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00154 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00233 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46758 * 60.00001 * 23 21 19 25 25 H 1.48495 * 109.46891 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47155 * 300.00131 * 23 21 19 27 27 H 1.09000 * 109.47012 * 262.94062 * 1 2 3 28 28 H 1.08997 * 109.47417 * 22.93704 * 1 2 3 29 29 H 1.09003 * 109.47298 * 142.93974 * 1 2 3 30 30 H 1.08995 * 115.55715 * 309.30984 * 5 4 3 31 31 H 1.09003 * 117.50041 * 359.97438 * 6 5 4 32 32 H 1.08997 * 117.50034 * 145.01961 * 6 5 4 33 33 H 1.09001 * 117.49633 * 252.51022 * 7 6 5 34 34 H 1.08997 * 117.51888 * 107.48052 * 7 6 5 35 35 H 1.08006 * 120.35221 * 180.02562 * 8 4 3 36 36 H 1.08002 * 120.85793 * 180.02562 * 9 8 4 37 37 H 1.08999 * 109.47288 * 299.99692 * 14 13 11 38 38 H 1.08999 * 109.47230 * 59.99799 * 14 13 11 39 39 H 0.96998 * 119.99767 * 0.02562 * 17 15 14 40 40 H 1.08997 * 109.47546 * 299.99492 * 18 17 15 41 41 H 1.08994 * 109.47314 * 60.00583 * 18 17 15 42 42 H 0.97002 * 119.99973 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1935 -0.0054 5 6 4.1690 2.5329 -0.0045 6 6 5.6516 2.5627 0.3724 7 6 4.6033 3.1028 1.3473 8 6 4.2369 0.0366 -0.0119 9 6 3.5995 -1.1913 -0.0122 10 6 2.1989 -1.2120 -0.0058 11 6 1.4667 -2.4950 -0.0062 12 8 0.2577 -2.5043 0.1107 13 8 2.1398 -3.6547 -0.1363 14 6 1.3554 -4.8765 -0.1289 15 6 2.2718 -6.0627 -0.2846 16 8 3.4681 -5.8948 -0.3919 17 7 1.7619 -7.3101 -0.3048 18 6 2.6528 -8.4632 -0.4568 19 6 1.8387 -9.7314 -0.4489 20 1 0.7651 -9.6833 -0.3410 21 6 2.4644 -10.9531 -0.5784 22 7 3.7717 -11.0117 -0.7092 23 14 1.4554 -12.5251 -0.5679 24 1 0.4852 -12.4980 -1.6919 25 1 2.3584 -13.6939 -0.7221 26 1 0.7204 -12.6330 0.7179 27 1 -0.3633 -0.1263 1.0199 28 1 -0.3634 0.9464 -0.4005 29 1 -0.3634 -0.8201 -0.6193 30 1 3.8278 3.2385 -0.7619 31 1 6.1271 1.6137 0.6202 32 1 6.2860 3.2879 -0.1371 33 1 4.5481 4.1834 1.4791 34 1 4.3890 2.5092 2.2360 35 1 5.3156 0.0914 -0.0159 36 1 4.1672 -2.1101 -0.0168 37 1 0.8152 -4.9558 0.8145 38 1 0.6439 -4.8566 -0.9544 39 1 0.8051 -7.4444 -0.2193 40 1 3.1919 -8.3839 -1.4007 41 1 3.3651 -8.4832 0.3680 42 1 4.2120 -11.8713 -0.8007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837780158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:47 Heat of formation + Delta-G solvation = -62.123698 kcal Electronic energy + Delta-G solvation = -24970.282854 eV Core-core repulsion = 21109.410242 eV Total energy + Delta-G solvation = -3860.872611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28956 -40.14473 -38.75230 -37.50547 -36.44693 -34.29330 -33.32185 -32.55867 -32.43043 -29.42234 -28.09672 -26.76431 -25.65198 -23.23599 -22.83615 -22.32611 -21.94450 -20.74184 -19.98777 -18.25272 -17.72895 -17.11900 -16.75411 -16.52194 -16.34036 -15.54623 -15.44223 -15.14292 -14.96947 -14.63838 -14.31415 -14.25161 -13.61816 -13.35387 -13.10789 -13.00240 -12.72275 -12.57106 -12.36453 -12.17208 -12.01874 -11.86788 -11.80632 -11.13502 -11.05754 -10.95203 -10.93203 -10.76687 -10.49632 -10.37165 -10.16483 -9.83595 -9.48609 -9.23145 -9.21101 -8.80802 -8.03105 -6.22060 -4.29763 0.18001 0.87425 2.25355 2.28210 3.11995 3.16425 3.22552 3.27568 3.28913 3.41440 3.68170 3.91402 4.22902 4.29940 4.37218 4.40490 4.43983 4.57317 4.63917 4.77315 5.00554 5.13449 5.13866 5.17152 5.18569 5.24642 5.29158 5.35770 5.45591 5.49795 5.59034 5.62452 5.68233 5.83805 5.90748 6.14518 6.35215 7.18510 7.25961 7.42194 7.51865 7.54922 7.59965 7.89020 8.45540 8.67290 8.91793 9.36676 10.87964 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.002051 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.270280 B =13645.503396 C =14543.846539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.202 3.798 3 N -0.487 5.487 4 C 0.195 3.805 5 C -0.115 4.115 6 C -0.171 4.171 7 C -0.159 4.159 8 C -0.192 4.192 9 C -0.006 4.006 10 C -0.186 4.186 11 C 0.514 3.486 12 O -0.499 6.499 13 O -0.325 6.325 14 C 0.050 3.950 15 C 0.500 3.500 16 O -0.535 6.535 17 N -0.706 5.706 18 C 0.252 3.748 19 C -0.547 4.547 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.393 0.607 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 26.647 2.327 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.063 3.937 3 N -0.197 5.197 4 C 0.058 3.942 5 C -0.134 4.134 6 C -0.209 4.209 7 C -0.196 4.196 8 C -0.212 4.212 9 C -0.031 4.031 10 C -0.189 4.189 11 C 0.358 3.642 12 O -0.390 6.390 13 O -0.239 6.239 14 C -0.027 4.027 15 C 0.283 3.717 16 O -0.412 6.412 17 N -0.356 5.356 18 C 0.131 3.869 19 C -0.585 4.585 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.472 27.321 2.254 27.453 hybrid contribution -0.543 -1.892 0.030 1.968 sum -2.015 25.429 2.284 25.611 Atomic orbital electron populations 1.21096 0.87235 1.04143 1.04419 1.21501 0.97570 0.86006 0.88607 1.67424 1.09181 1.28098 1.14990 1.20639 0.89105 0.93950 0.90507 1.20848 0.96561 0.94771 1.01221 1.23146 0.90795 1.03713 1.03199 1.22988 1.02319 1.01462 0.92868 1.21972 1.02143 0.92050 1.04995 1.22083 0.93012 0.99573 0.88475 1.19932 0.94550 0.91597 1.12818 1.20878 0.85814 0.84299 0.73201 1.90795 1.14653 1.87638 1.45864 1.86586 1.40524 1.13947 1.82887 1.22907 0.93701 0.81424 1.04709 1.19868 0.88832 0.84118 0.78917 1.90703 1.15408 1.85567 1.49569 1.46367 1.11861 1.05778 1.71579 1.19177 0.89460 0.80458 0.97762 1.21171 0.93804 0.90565 1.52954 0.91791 1.24953 0.95059 0.99386 0.94583 1.69962 1.08164 1.26149 1.47896 0.86439 0.79716 0.81838 0.78715 1.20026 1.21033 1.20024 0.89538 0.90769 0.88049 0.85633 0.87964 0.87734 0.87896 0.88527 0.83628 0.82482 0.88292 0.88292 0.77381 0.95242 0.95240 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.86 36.00 0.32 -0.84 16 2 C 0.20 2.39 6.82 -82.16 -0.56 1.83 16 3 N -0.49 -5.66 10.17 -5.41 -0.05 -5.71 16 4 C 0.20 1.93 6.46 -82.50 -0.53 1.40 16 5 C -0.12 -0.84 6.21 -91.77 -0.57 -1.41 16 6 C -0.17 -0.90 9.79 -26.73 -0.26 -1.16 16 7 C -0.16 -0.95 10.23 -26.73 -0.27 -1.23 16 8 C -0.19 -1.78 9.34 -39.50 -0.37 -2.15 16 9 C -0.01 -0.07 9.74 -38.85 -0.38 -0.44 16 10 C -0.19 -2.30 5.89 -104.84 -0.62 -2.92 16 11 C 0.51 7.10 7.83 34.61 0.27 7.37 16 12 O -0.50 -7.13 13.18 -19.24 -0.25 -7.38 16 13 O -0.32 -5.00 9.10 -47.20 -0.43 -5.43 16 14 C 0.05 0.73 5.95 36.01 0.21 0.95 16 15 C 0.50 9.74 7.91 -10.98 -0.09 9.65 16 16 O -0.53 -12.70 16.50 -14.10 -0.23 -12.93 16 17 N -0.71 -14.26 5.55 -61.47 -0.34 -14.60 16 18 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 19 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 20 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -25.60 13.29 55.43 0.74 -24.87 16 23 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.12 5.89 -51.93 -0.31 0.82 16 30 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.50 6.38 -51.93 -0.33 0.17 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.15 0.98 6.23 -52.48 -0.33 0.65 16 36 H 0.16 1.68 7.72 -52.49 -0.41 1.27 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.39 6.64 8.32 -40.82 -0.34 6.30 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -32.99 365.69 -8.85 -41.84 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.47 Total: 3.74 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.29 Total: 4.36 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.34 Total: -45.18 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.92 Total: -25.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.99 -8.85 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837780158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.287 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds