Wall clock time and date at job start Tue Mar 31 2020 13:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31687 * 119.71618 * 2 1 4 4 C 1.31934 * 121.88051 * 180.27746 * 3 2 1 5 5 C 1.50704 * 119.45052 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49597 * 163.60195 * 5 4 3 7 7 C 1.53001 * 60.00116 * 252.51175 * 6 5 4 8 8 C 1.38355 * 121.09569 * 0.02562 * 4 3 2 9 9 C 1.38346 * 119.30651 * 359.97438 * 8 4 3 10 10 C 1.39566 * 119.72178 * 180.27360 * 2 1 3 11 11 C 1.47721 * 120.56389 * 359.74347 * 10 2 1 12 12 O 1.21467 * 119.99781 * 353.87461 * 11 10 2 13 13 O 1.34712 * 120.00090 * 173.87284 * 11 10 2 14 14 C 1.45199 * 117.00008 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47153 * 179.97438 * 14 13 11 16 16 O 1.21278 * 119.99808 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99980 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99584 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46798 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00125 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00154 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00233 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46758 * 60.00001 * 23 21 19 25 25 H 1.48495 * 109.46891 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47155 * 300.00131 * 23 21 19 27 27 H 1.09000 * 109.47012 * 262.94062 * 1 2 3 28 28 H 1.08997 * 109.47417 * 22.93704 * 1 2 3 29 29 H 1.09003 * 109.47298 * 142.93974 * 1 2 3 30 30 H 1.08995 * 115.55715 * 309.30984 * 5 4 3 31 31 H 1.09003 * 117.50041 * 359.97438 * 6 5 4 32 32 H 1.08997 * 117.50034 * 145.01961 * 6 5 4 33 33 H 1.09001 * 117.49633 * 252.51022 * 7 6 5 34 34 H 1.08997 * 117.51888 * 107.48052 * 7 6 5 35 35 H 1.08006 * 120.35221 * 180.02562 * 8 4 3 36 36 H 1.08002 * 120.85793 * 180.02562 * 9 8 4 37 37 H 1.08999 * 109.47288 * 299.99692 * 14 13 11 38 38 H 1.08999 * 109.47230 * 59.99799 * 14 13 11 39 39 H 0.96998 * 119.99767 * 0.02562 * 17 15 14 40 40 H 1.08997 * 109.47546 * 299.99492 * 18 17 15 41 41 H 1.08994 * 109.47314 * 60.00583 * 18 17 15 42 42 H 0.97002 * 119.99973 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1935 -0.0054 5 6 4.1690 2.5329 -0.0045 6 6 5.6516 2.5627 0.3724 7 6 4.6033 3.1028 1.3473 8 6 4.2369 0.0366 -0.0119 9 6 3.5995 -1.1913 -0.0122 10 6 2.1989 -1.2120 -0.0058 11 6 1.4667 -2.4950 -0.0062 12 8 0.2577 -2.5043 0.1107 13 8 2.1398 -3.6547 -0.1363 14 6 1.3554 -4.8765 -0.1289 15 6 2.2718 -6.0627 -0.2846 16 8 3.4681 -5.8948 -0.3919 17 7 1.7619 -7.3101 -0.3048 18 6 2.6528 -8.4632 -0.4568 19 6 1.8387 -9.7314 -0.4489 20 1 0.7651 -9.6833 -0.3410 21 6 2.4644 -10.9531 -0.5784 22 7 3.7717 -11.0117 -0.7092 23 14 1.4554 -12.5251 -0.5679 24 1 0.4852 -12.4980 -1.6919 25 1 2.3584 -13.6939 -0.7221 26 1 0.7204 -12.6330 0.7179 27 1 -0.3633 -0.1263 1.0199 28 1 -0.3634 0.9464 -0.4005 29 1 -0.3634 -0.8201 -0.6193 30 1 3.8278 3.2385 -0.7619 31 1 6.1271 1.6137 0.6202 32 1 6.2860 3.2879 -0.1371 33 1 4.5481 4.1834 1.4791 34 1 4.3890 2.5092 2.2360 35 1 5.3156 0.0914 -0.0159 36 1 4.1672 -2.1101 -0.0168 37 1 0.8152 -4.9558 0.8145 38 1 0.6439 -4.8566 -0.9544 39 1 0.8051 -7.4444 -0.2193 40 1 3.1919 -8.3839 -1.4007 41 1 3.3651 -8.4832 0.3680 42 1 4.2120 -11.8713 -0.8007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837780158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:46 Heat of formation + Delta-G solvation = -82.493293 kcal Electronic energy + Delta-G solvation = -24971.166146 eV Core-core repulsion = 21109.410242 eV Total energy + Delta-G solvation = -3861.755903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22939 -41.19537 -40.29742 -38.16957 -37.53151 -36.19220 -34.42749 -34.15520 -33.35707 -30.89029 -29.15621 -28.33813 -26.53324 -24.67491 -23.86228 -23.06833 -22.87203 -21.66160 -21.51001 -19.45480 -19.04294 -18.27926 -17.92542 -17.60982 -17.39504 -17.03213 -16.88626 -16.35372 -16.09928 -15.94456 -15.37750 -15.27578 -14.77472 -14.43421 -14.33267 -14.21066 -14.02086 -13.76130 -13.65844 -13.48220 -13.17235 -12.95798 -12.81500 -12.68665 -12.32213 -12.24563 -11.94586 -11.71558 -11.55156 -11.52345 -11.36649 -10.99052 -10.94822 -10.80961 -10.63790 -9.99627 -9.93715 -8.29786 -6.46437 -0.69319 0.04806 1.11535 1.27126 1.44539 1.47702 1.54330 1.56129 2.32158 2.45179 2.52484 2.73882 3.05378 3.07156 3.42374 3.51950 3.61036 3.69247 3.84327 3.91376 4.00501 4.05144 4.06661 4.13391 4.35663 4.49539 4.63673 4.68906 4.75267 4.82770 4.94662 4.97476 5.05836 5.07939 5.17296 5.21543 5.22273 5.26087 5.41003 5.49069 5.62322 5.81677 6.45438 6.62290 6.72584 6.76940 7.19883 7.34835 8.81965 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.002051 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.270280 B =13645.503396 C =14543.846539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.194 3.806 3 N -0.503 5.503 4 C 0.193 3.807 5 C -0.133 4.133 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.187 4.187 9 C -0.013 4.013 10 C -0.205 4.205 11 C 0.517 3.483 12 O -0.506 6.506 13 O -0.342 6.342 14 C 0.061 3.939 15 C 0.500 3.500 16 O -0.583 6.583 17 N -0.698 5.698 18 C 0.267 3.733 19 C -0.558 4.558 20 H 0.086 0.914 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.286 1.286 26 H -0.262 1.262 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.413 0.587 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 27.652 2.598 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.056 3.944 3 N -0.213 5.213 4 C 0.056 3.944 5 C -0.152 4.152 6 C -0.193 4.193 7 C -0.195 4.195 8 C -0.206 4.206 9 C -0.038 4.038 10 C -0.208 4.208 11 C 0.362 3.638 12 O -0.396 6.396 13 O -0.258 6.258 14 C -0.015 4.015 15 C 0.286 3.714 16 O -0.463 6.463 17 N -0.350 5.350 18 C 0.145 3.855 19 C -0.596 4.596 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.212 1.212 26 H -0.187 1.187 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.190 0.810 36 H 0.173 0.827 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.249 0.751 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.801 28.358 2.534 28.609 hybrid contribution -0.069 -2.067 -0.047 2.069 sum -2.869 26.291 2.486 26.564 Atomic orbital electron populations 1.21061 0.86498 1.04381 1.04470 1.21710 0.98252 0.85952 0.88532 1.67492 1.10184 1.27884 1.15693 1.21146 0.88774 0.95418 0.89047 1.20938 0.98108 0.93729 1.02395 1.23274 0.89777 1.04277 1.02018 1.23065 1.02326 1.02218 0.91934 1.22249 1.03453 0.91132 1.03786 1.22173 0.92664 1.00311 0.88652 1.19956 0.95162 0.91051 1.14640 1.21056 0.85807 0.84089 0.72801 1.90785 1.14816 1.87630 1.46385 1.86572 1.41352 1.14498 1.83354 1.22798 0.92148 0.79257 1.07312 1.20661 0.88834 0.84964 0.76978 1.90681 1.17939 1.86325 1.51402 1.46036 1.12226 1.05002 1.71713 1.18622 0.89666 0.82843 0.94409 1.21589 0.94902 0.90703 1.52415 0.89576 1.26049 0.96148 1.03488 0.93858 1.70124 1.10357 1.27176 1.49117 0.85205 0.77940 0.76614 0.79450 1.18707 1.21187 1.18689 0.89212 0.89662 0.88855 0.85155 0.87507 0.85936 0.86457 0.89360 0.81009 0.82699 0.85475 0.85477 0.75075 0.98948 0.98926 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 8.86 71.24 0.63 -1.52 16 2 C 0.19 4.52 6.82 42.90 0.29 4.81 16 3 N -0.50 -11.32 10.17 -171.02 -1.74 -13.06 16 4 C 0.19 3.61 6.46 42.57 0.28 3.88 16 5 C -0.13 -1.70 6.21 -11.54 -0.07 -1.77 16 6 C -0.16 -1.24 9.79 30.59 0.30 -0.94 16 7 C -0.16 -1.58 10.23 30.60 0.31 -1.27 16 8 C -0.19 -3.25 9.34 22.32 0.21 -3.04 16 9 C -0.01 -0.28 9.74 22.74 0.22 -0.05 16 10 C -0.20 -5.03 5.89 -20.00 -0.12 -5.15 16 11 C 0.52 14.03 7.83 70.33 0.55 14.58 16 12 O -0.51 -13.90 13.18 19.94 0.26 -13.64 16 13 O -0.34 -10.39 9.10 -49.83 -0.45 -10.84 16 14 C 0.06 1.71 5.95 71.24 0.42 2.14 16 15 C 0.50 19.57 7.91 87.66 0.69 20.26 16 16 O -0.58 -28.65 16.50 15.78 0.26 -28.39 16 17 N -0.70 -28.26 5.55 -466.79 -2.59 -30.85 16 18 C 0.27 14.24 5.43 85.64 0.46 14.71 16 19 C -0.56 -29.58 9.28 25.60 0.24 -29.34 16 20 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 21 C 0.00 0.24 5.46 84.65 0.46 0.71 16 22 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 23 Si 0.98 41.55 29.54 68.60 2.03 43.57 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 2.02 5.89 -2.39 -0.01 2.01 16 30 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 0.76 6.38 -2.39 -0.02 0.74 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.17 1.96 6.23 -2.91 -0.02 1.94 16 36 H 0.16 3.37 7.72 -2.91 -0.02 3.34 16 37 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.41 13.35 8.32 -92.71 -0.77 12.58 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.49 365.69 3.23 -70.26 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.29 Total: 19.79 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 4.88 Total: 17.99 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -4.04 Total: -98.74 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: 0.07 Total: -52.87 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -73.49 3.23 -70.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837780158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.234 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds