Wall clock time and date at job start Tue Mar 31 2020 11:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99644 * 2 1 4 4 H 1.48497 * 109.47189 * 270.00161 * 3 2 1 5 5 H 1.48496 * 109.47174 * 30.00389 * 3 2 1 6 6 H 1.48510 * 109.46668 * 150.00420 * 3 2 1 7 7 C 1.38950 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00139 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99782 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99614 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00388 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99764 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.47250 * 179.97438 * 12 10 9 14 14 C 1.34219 * 117.00135 * 179.97438 * 13 12 10 15 15 O 1.20827 * 120.00184 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00010 * 180.02562 * 14 13 12 17 17 H 1.08993 * 110.90247 * 62.41513 * 16 14 13 18 18 C 1.55140 * 110.98924 * 298.54461 * 16 14 13 19 19 C 1.54317 * 103.02030 * 206.25112 * 18 16 14 20 20 N 1.47444 * 107.23199 * 22.29140 * 19 18 16 21 21 C 1.39675 * 111.00503 * 123.25355 * 20 19 18 22 22 C 1.38910 * 120.07037 * 36.25436 * 21 20 19 23 23 C 1.38110 * 119.92351 * 179.97438 * 22 21 20 24 24 C 1.38288 * 120.07199 * 0.02562 * 23 22 21 25 25 C 1.38290 * 120.14985 * 0.27181 * 24 23 22 26 26 C 1.38102 * 120.07582 * 359.44667 * 25 24 23 27 27 C 1.47848 * 108.56756 * 0.98558 * 20 19 18 28 28 H 0.96996 * 119.99974 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00205 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47254 * 59.99920 * 12 10 9 31 31 H 1.09000 * 109.47353 * 300.00142 * 12 10 9 32 32 H 1.09006 * 110.70451 * 87.87508 * 18 16 14 33 33 H 1.08995 * 110.85822 * 324.71081 * 18 16 14 34 34 H 1.09000 * 109.89380 * 262.88327 * 19 18 16 35 35 H 1.09004 * 110.01997 * 141.76590 * 19 18 16 36 36 H 1.07996 * 120.03807 * 0.02562 * 22 21 20 37 37 H 1.07999 * 119.96252 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.92040 * 179.97438 * 24 23 22 39 39 H 1.08000 * 119.95648 * 179.70915 * 25 24 23 40 40 H 1.07993 * 120.03890 * 180.27271 * 26 25 24 41 41 H 1.08996 * 110.37845 * 94.73410 * 27 20 19 42 42 H 1.09000 * 110.37454 * 217.08230 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0011 13 8 6.0448 -3.7394 -0.0005 14 6 7.3755 -3.9152 -0.0009 15 8 8.1115 -2.9570 -0.0013 16 6 7.9515 -5.3078 -0.0009 17 1 7.6642 -5.8475 -0.9032 18 6 7.5248 -6.0857 1.2718 19 6 8.6635 -7.1119 1.4501 20 7 9.8433 -6.5828 0.7414 21 6 10.9363 -6.4701 1.6036 22 6 11.1397 -7.4190 2.5975 23 6 12.2218 -7.3049 3.4481 24 6 13.1020 -6.2471 3.3114 25 6 12.8990 -5.2973 2.3269 26 6 11.8223 -5.4086 1.4694 27 6 9.4922 -5.2710 0.1568 28 1 -0.4850 0.8400 0.0004 29 1 3.8648 -0.3632 -0.0007 30 1 5.9241 -1.8566 0.8890 31 1 5.9241 -1.8566 -0.8910 32 1 6.5721 -6.5910 1.1133 33 1 7.4677 -5.4197 2.1327 34 1 8.3707 -8.0694 1.0194 35 1 8.8917 -7.2358 2.5088 36 1 10.4528 -8.2455 2.7045 37 1 12.3807 -8.0425 4.2207 38 1 13.9472 -6.1600 3.9781 39 1 13.5858 -4.4699 2.2260 40 1 11.6668 -4.6689 0.6980 41 1 9.7856 -4.4650 0.8293 42 1 9.9702 -5.1485 -0.8151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837856414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:28 Heat of formation + Delta-G solvation = -73.522891 kcal Electronic energy + Delta-G solvation = -25509.548905 eV Core-core repulsion = 21648.181987 eV Total energy + Delta-G solvation = -3861.366917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16918 -40.15944 -38.46894 -37.81237 -36.26269 -34.09741 -33.19700 -31.82981 -31.60050 -29.63846 -29.00942 -28.36012 -24.90085 -23.88499 -23.30693 -21.94825 -20.86203 -20.22841 -19.68098 -18.63988 -18.34293 -17.52216 -16.79648 -16.32791 -16.06006 -15.83170 -15.36358 -15.29706 -14.93587 -14.52271 -14.29941 -14.05049 -13.70251 -13.48854 -13.47251 -13.23631 -12.95681 -12.58483 -12.37924 -12.26015 -12.21220 -11.98094 -11.81054 -11.56363 -11.29181 -11.24910 -11.10534 -10.67785 -10.59826 -10.49680 -10.10332 -10.07712 -9.70665 -9.20557 -8.70625 -8.32294 -8.14072 -6.41901 -3.94958 1.10954 1.12227 2.09969 2.44715 2.96331 3.01121 3.09942 3.30962 3.51781 3.69568 4.01113 4.02475 4.08458 4.33686 4.59931 4.65385 4.68437 4.83173 4.86717 4.89993 4.95684 5.08042 5.14556 5.19825 5.24095 5.32918 5.40925 5.43777 5.47635 5.49782 5.58821 5.63794 5.71696 5.75477 5.88614 6.12958 6.29169 6.41534 6.45038 6.57981 6.95172 7.41440 7.68813 7.97763 8.44718 8.80760 9.26884 9.62152 10.70291 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.002247 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.849814 B =12457.379797 C =12924.656551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.447 3.553 11 O -0.557 6.557 12 C 0.057 3.943 13 O -0.320 6.320 14 C 0.470 3.530 15 O -0.512 6.512 16 C -0.092 4.092 17 H 0.128 0.872 18 C -0.129 4.129 19 C 0.037 3.963 20 N -0.477 5.477 21 C 0.112 3.888 22 C -0.157 4.157 23 C -0.093 4.093 24 C -0.153 4.153 25 C -0.091 4.091 26 C -0.163 4.163 27 C 0.055 3.945 28 H 0.276 0.724 29 H 0.373 0.627 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.777 -11.063 4.400 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.232 3.768 11 O -0.439 6.439 12 C -0.021 4.021 13 O -0.234 6.234 14 C 0.313 3.687 15 O -0.401 6.401 16 C -0.112 4.112 17 H 0.146 0.854 18 C -0.167 4.167 19 C -0.088 4.088 20 N -0.190 5.190 21 C 0.013 3.987 22 C -0.178 4.178 23 C -0.112 4.112 24 C -0.172 4.172 25 C -0.110 4.110 26 C -0.184 4.184 27 C -0.070 4.070 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 24.383 -11.705 3.952 27.334 hybrid contribution 0.450 2.070 0.427 2.161 sum 24.833 -9.636 4.379 26.994 Atomic orbital electron populations 1.69612 1.05647 1.27792 1.48266 1.25045 0.95533 0.98083 0.97249 0.86677 0.79844 0.83855 0.79111 1.19382 1.19919 1.19375 1.19421 0.78646 0.96881 1.48724 0.85993 1.42039 1.07657 1.05703 1.66499 1.19171 0.86884 0.85154 0.85591 1.90604 1.69011 1.30694 1.53554 1.22783 0.95243 0.80424 1.03616 1.86557 1.22856 1.31256 1.82687 1.23283 0.81225 0.91811 0.72429 1.90662 1.60719 1.42849 1.45831 1.22102 0.95454 0.90927 1.02732 0.85431 1.22794 1.00092 0.97732 0.96112 1.23181 0.87956 0.99085 0.98615 1.60582 1.04928 1.23725 1.29808 1.19155 0.93885 0.94596 0.91048 1.20889 1.00200 1.00223 0.96490 1.21000 0.94011 0.97759 0.98410 1.21067 1.00442 0.95889 0.99835 1.21021 0.96763 0.98510 0.94685 1.21092 0.96987 0.98162 1.02142 1.23181 0.92477 0.89459 1.01922 0.91359 0.79388 0.89438 0.89332 0.88127 0.90329 0.89007 0.90528 0.85606 0.85993 0.86274 0.85984 0.85462 0.90280 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 9 N -0.58 -13.58 5.09 -10.96 -0.06 -13.63 16 10 C 0.45 10.18 7.86 -10.98 -0.09 10.10 16 11 O -0.56 -15.05 16.08 -14.11 -0.23 -15.28 16 12 C 0.06 1.00 5.94 36.01 0.21 1.21 16 13 O -0.32 -5.47 9.74 -45.87 -0.45 -5.91 16 14 C 0.47 6.70 7.27 36.01 0.26 6.96 16 15 O -0.51 -8.08 15.55 -18.75 -0.29 -8.37 16 16 C -0.09 -0.98 3.54 -89.63 -0.32 -1.29 16 17 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.13 -1.22 6.39 -24.91 -0.16 -1.38 16 19 C 0.04 0.30 6.18 -2.84 -0.02 0.28 16 20 N -0.48 -4.57 5.27 -167.91 -0.89 -5.46 16 21 C 0.11 1.11 5.78 -83.79 -0.48 0.62 16 22 C -0.16 -1.38 8.59 -39.38 -0.34 -1.72 16 23 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 24 C -0.15 -1.22 10.04 -39.54 -0.40 -1.62 16 25 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 26 C -0.16 -1.58 8.66 -39.38 -0.34 -1.92 16 27 C 0.06 0.55 4.53 -2.29 -0.01 0.54 16 28 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 30 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 36 H 0.13 0.92 6.77 -52.49 -0.36 0.56 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.16 6.41 -52.49 -0.34 0.82 16 41 H 0.08 0.87 5.87 -51.93 -0.31 0.57 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -33.41 352.17 -8.58 -41.99 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.32 Total: 9.47 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.72 Total: 1.88 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.17 Total: -43.25 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.97 Total: -29.56 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.41 -8.58 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837856414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.538 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds