Wall clock time and date at job start Tue Mar 31 2020 11:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99644 * 2 1 4 4 H 1.48497 * 109.47189 * 270.00161 * 3 2 1 5 5 H 1.48496 * 109.47174 * 30.00389 * 3 2 1 6 6 H 1.48510 * 109.46668 * 150.00420 * 3 2 1 7 7 C 1.38950 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00139 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99782 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99614 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00388 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99764 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.47250 * 179.97438 * 12 10 9 14 14 C 1.34219 * 117.00135 * 179.97438 * 13 12 10 15 15 O 1.20827 * 120.00184 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00010 * 180.02562 * 14 13 12 17 17 H 1.08993 * 110.90247 * 62.41513 * 16 14 13 18 18 C 1.55140 * 110.98924 * 298.54461 * 16 14 13 19 19 C 1.54317 * 103.02030 * 206.25112 * 18 16 14 20 20 N 1.47444 * 107.23199 * 22.29140 * 19 18 16 21 21 C 1.39675 * 111.00503 * 123.25355 * 20 19 18 22 22 C 1.38910 * 120.07037 * 36.25436 * 21 20 19 23 23 C 1.38110 * 119.92351 * 179.97438 * 22 21 20 24 24 C 1.38288 * 120.07199 * 0.02562 * 23 22 21 25 25 C 1.38290 * 120.14985 * 0.27181 * 24 23 22 26 26 C 1.38102 * 120.07582 * 359.44667 * 25 24 23 27 27 C 1.47848 * 108.56756 * 0.98558 * 20 19 18 28 28 H 0.96996 * 119.99974 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00205 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47254 * 59.99920 * 12 10 9 31 31 H 1.09000 * 109.47353 * 300.00142 * 12 10 9 32 32 H 1.09006 * 110.70451 * 87.87508 * 18 16 14 33 33 H 1.08995 * 110.85822 * 324.71081 * 18 16 14 34 34 H 1.09000 * 109.89380 * 262.88327 * 19 18 16 35 35 H 1.09004 * 110.01997 * 141.76590 * 19 18 16 36 36 H 1.07996 * 120.03807 * 0.02562 * 22 21 20 37 37 H 1.07999 * 119.96252 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.92040 * 179.97438 * 24 23 22 39 39 H 1.08000 * 119.95648 * 179.70915 * 25 24 23 40 40 H 1.07993 * 120.03890 * 180.27271 * 26 25 24 41 41 H 1.08996 * 110.37845 * 94.73410 * 27 20 19 42 42 H 1.09000 * 110.37454 * 217.08230 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0011 13 8 6.0448 -3.7394 -0.0005 14 6 7.3755 -3.9152 -0.0009 15 8 8.1115 -2.9570 -0.0013 16 6 7.9515 -5.3078 -0.0009 17 1 7.6642 -5.8475 -0.9032 18 6 7.5248 -6.0857 1.2718 19 6 8.6635 -7.1119 1.4501 20 7 9.8433 -6.5828 0.7414 21 6 10.9363 -6.4701 1.6036 22 6 11.1397 -7.4190 2.5975 23 6 12.2218 -7.3049 3.4481 24 6 13.1020 -6.2471 3.3114 25 6 12.8990 -5.2973 2.3269 26 6 11.8223 -5.4086 1.4694 27 6 9.4922 -5.2710 0.1568 28 1 -0.4850 0.8400 0.0004 29 1 3.8648 -0.3632 -0.0007 30 1 5.9241 -1.8566 0.8890 31 1 5.9241 -1.8566 -0.8910 32 1 6.5721 -6.5910 1.1133 33 1 7.4677 -5.4197 2.1327 34 1 8.3707 -8.0694 1.0194 35 1 8.8917 -7.2358 2.5088 36 1 10.4528 -8.2455 2.7045 37 1 12.3807 -8.0425 4.2207 38 1 13.9472 -6.1600 3.9781 39 1 13.5858 -4.4699 2.2260 40 1 11.6668 -4.6689 0.6980 41 1 9.7856 -4.4650 0.8293 42 1 9.9702 -5.1485 -0.8151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837856414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:28 Heat of formation + Delta-G solvation = -95.198181 kcal Electronic energy + Delta-G solvation = -25510.488816 eV Core-core repulsion = 21648.181987 eV Total energy + Delta-G solvation = -3862.306828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12807 -41.13689 -40.19147 -38.61828 -37.53864 -36.10435 -33.97624 -33.85996 -32.23719 -30.63733 -29.98296 -29.36096 -26.61640 -24.98164 -23.97358 -22.77817 -21.57559 -21.52471 -21.18833 -20.54291 -19.27484 -18.46722 -17.96268 -17.78030 -17.27967 -16.94658 -16.67735 -16.18449 -15.97581 -15.79158 -15.49133 -15.04871 -14.84520 -14.66974 -14.39310 -14.22836 -14.16165 -14.00910 -13.84658 -13.68980 -13.03373 -12.99049 -12.78959 -12.52672 -12.47627 -12.25834 -12.02027 -11.98323 -11.90317 -11.75432 -11.60592 -11.58716 -10.77331 -10.63079 -10.35887 -9.83510 -8.81267 -8.47508 -6.10756 0.46486 0.49313 0.98018 1.24276 1.29903 1.32314 1.43562 1.73610 2.18722 2.56657 2.80141 3.04519 3.06684 3.23467 3.35037 3.61321 3.85637 3.98380 4.02053 4.06148 4.09461 4.09881 4.13600 4.17779 4.32652 4.48905 4.58763 4.59932 4.67113 4.75058 4.83083 4.87805 5.04854 5.09227 5.21380 5.24283 5.45934 5.52580 5.67777 5.81961 5.83594 5.90269 6.29750 6.42681 6.55339 6.75556 7.23756 7.75325 8.68984 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.002247 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.849814 B =12457.379797 C =12924.656551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.232 1.232 7 C -0.333 4.333 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.448 3.552 11 O -0.607 6.607 12 C 0.066 3.934 13 O -0.340 6.340 14 C 0.474 3.526 15 O -0.526 6.526 16 C -0.089 4.089 17 H 0.145 0.855 18 C -0.127 4.127 19 C 0.041 3.959 20 N -0.480 5.480 21 C 0.093 3.907 22 C -0.166 4.166 23 C -0.098 4.098 24 C -0.158 4.158 25 C -0.101 4.101 26 C -0.180 4.180 27 C 0.062 3.938 28 H 0.282 0.718 29 H 0.393 0.607 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.827 -10.208 4.889 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.155 1.155 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.492 6.492 12 C -0.011 4.011 13 O -0.255 6.255 14 C 0.317 3.683 15 O -0.415 6.415 16 C -0.109 4.109 17 H 0.162 0.838 18 C -0.166 4.166 19 C -0.084 4.084 20 N -0.193 5.193 21 C -0.005 4.005 22 C -0.186 4.186 23 C -0.116 4.116 24 C -0.177 4.177 25 C -0.120 4.120 26 C -0.201 4.201 27 C -0.064 4.064 28 H 0.092 0.908 29 H 0.229 0.771 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 27.468 -10.857 4.445 29.869 hybrid contribution -0.499 1.675 0.304 1.774 sum 26.969 -9.182 4.749 28.883 Atomic orbital electron populations 1.69779 1.08053 1.29576 1.48994 1.26098 0.96482 1.02658 0.95598 0.85418 0.79548 0.76783 0.80176 1.17908 1.19667 1.15529 1.18998 0.80713 0.95337 1.51137 0.92062 1.41821 1.06139 1.07022 1.66804 1.20161 0.89301 0.84034 0.82970 1.90580 1.70922 1.32558 1.55125 1.22621 0.90697 0.81519 1.06242 1.86563 1.24670 1.30951 1.83285 1.23885 0.79953 0.93018 0.71420 1.90652 1.60628 1.43680 1.46565 1.22227 0.95712 0.88934 1.03999 0.83774 1.22797 1.00861 0.97776 0.95125 1.23228 0.86948 0.99111 0.99161 1.60663 1.05264 1.23228 1.30164 1.19350 0.94171 0.95263 0.91765 1.21123 1.00833 1.00364 0.96317 1.21336 0.93538 0.98173 0.98603 1.21394 1.00996 0.95542 0.99789 1.21291 0.96769 0.99263 0.94635 1.21235 0.97691 0.98467 1.02711 1.23111 0.91803 0.89532 1.01998 0.90800 0.77109 0.86776 0.86460 0.87793 0.91328 0.87476 0.89881 0.84393 0.83789 0.84247 0.84503 0.85667 0.91552 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 13.96 21.66 0.30 -54.02 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 0.96 37.63 27.74 68.60 1.90 39.53 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 7 C -0.33 -19.12 10.16 84.04 0.85 -18.27 16 8 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 9 N -0.58 -26.80 5.09 -306.99 -1.56 -28.36 16 10 C 0.45 20.42 7.86 87.66 0.69 21.11 16 11 O -0.61 -33.97 16.08 15.75 0.25 -33.72 16 12 C 0.07 2.19 5.94 71.24 0.42 2.61 16 13 O -0.34 -11.24 9.74 -44.96 -0.44 -11.68 16 14 C 0.47 12.82 7.27 71.24 0.52 13.34 16 15 O -0.53 -15.67 15.55 21.96 0.34 -15.32 16 16 C -0.09 -1.77 3.54 -10.15 -0.04 -1.80 16 17 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 18 C -0.13 -2.26 6.39 31.77 0.20 -2.06 16 19 C 0.04 0.60 6.18 86.65 0.54 1.13 16 20 N -0.48 -8.56 5.27 -685.15 -3.61 -12.17 16 21 C 0.09 1.74 5.78 38.21 0.22 1.96 16 22 C -0.17 -2.64 8.59 22.40 0.19 -2.45 16 23 C -0.10 -1.36 10.04 22.25 0.22 -1.13 16 24 C -0.16 -2.21 10.04 22.29 0.22 -1.99 16 25 C -0.10 -1.60 10.04 22.25 0.22 -1.37 16 26 C -0.18 -3.35 8.66 22.40 0.19 -3.15 16 27 C 0.06 1.16 4.53 86.77 0.39 1.55 16 28 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 30 H 0.11 3.20 8.13 -2.38 -0.02 3.18 16 31 H 0.12 3.24 8.13 -2.39 -0.02 3.22 16 32 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.13 5.93 -2.38 -0.01 1.11 16 36 H 0.14 1.75 6.77 -2.91 -0.02 1.73 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.13 2.25 6.41 -2.91 -0.02 2.23 16 41 H 0.07 1.42 5.87 -2.39 -0.01 1.41 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -76.42 352.17 2.98 -73.44 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.46 Total: 32.80 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 5.33 Total: 9.49 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -4.87 Total: -94.55 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: 0.16 Total: -60.72 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 1.90 Total: 39.53 kcal Total: -76.42 2.98 -73.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837856414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.756 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds