Wall clock time and date at job start Tue Mar 31 2020 11:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47200 * 269.99859 * 3 2 1 5 5 H 1.48493 * 109.47114 * 29.99961 * 3 2 1 6 6 H 1.48503 * 109.46950 * 149.99992 * 3 2 1 7 7 C 1.38952 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99665 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99837 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00154 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99925 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.34226 * 117.00147 * 180.02562 * 13 12 10 15 15 O 1.20831 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00153 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.62886 * 300.69790 * 16 14 13 18 18 C 1.55137 * 110.85660 * 63.90991 * 16 14 13 19 19 C 1.54907 * 101.65122 * 154.10773 * 18 16 14 20 20 N 1.47841 * 104.79765 * 322.92428 * 19 18 16 21 21 C 1.39682 * 110.99650 * 146.36531 * 20 19 18 22 22 C 1.38906 * 120.07039 * 202.72073 * 21 20 19 23 23 C 1.38104 * 119.92144 * 179.77186 * 22 21 20 24 24 C 1.38281 * 120.07744 * 0.50505 * 23 22 21 25 25 C 1.38291 * 120.14515 * 359.74543 * 24 23 22 26 26 C 1.38105 * 120.07638 * 0.02562 * 25 24 23 27 27 C 1.47446 * 108.56264 * 24.10210 * 20 19 18 28 28 H 0.97003 * 119.99946 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00314 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47155 * 59.99747 * 12 10 9 31 31 H 1.09005 * 109.46937 * 300.00147 * 12 10 9 32 32 H 1.09003 * 110.98931 * 272.19863 * 18 16 14 33 33 H 1.09003 * 110.99300 * 36.01232 * 18 16 14 34 34 H 1.09007 * 110.36802 * 204.09632 * 19 18 16 35 35 H 1.08994 * 110.37611 * 81.76277 * 19 18 16 36 36 H 1.08006 * 120.04471 * 0.02562 * 22 21 20 37 37 H 1.08006 * 119.96428 * 180.25168 * 23 22 21 38 38 H 1.08002 * 119.93179 * 179.76612 * 24 23 22 39 39 H 1.08003 * 119.96299 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.03335 * 180.02562 * 26 25 24 41 41 H 1.09003 * 109.88448 * 239.59912 * 27 20 19 42 42 H 1.09002 * 110.02507 * 118.49176 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2435 -4.8630 0.0011 13 8 2.1870 -5.9667 0.0016 14 6 1.6740 -7.2070 0.0016 15 8 0.4761 -7.3653 0.0017 16 6 2.5919 -8.4022 0.0016 17 1 3.2388 -8.3895 -0.8757 18 6 3.4341 -8.4519 1.3035 19 6 3.7394 -9.9660 1.4209 20 7 2.5085 -10.6369 0.9515 21 6 2.8095 -11.8320 0.2940 22 6 1.9078 -12.3734 -0.6133 23 6 2.2106 -13.5527 -1.2652 24 6 3.4053 -14.1998 -1.0079 25 6 4.3029 -13.6661 -0.1013 26 6 4.0085 -12.4848 0.5506 27 6 1.7805 -9.7134 0.0621 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 0.0005 30 1 0.6165 -4.9209 -0.8885 31 1 0.6172 -4.9205 0.8914 32 1 4.3530 -7.8754 1.1963 33 1 2.8536 -8.1031 2.1576 34 1 3.9449 -10.2323 2.4578 35 1 4.5834 -10.2333 0.7852 36 1 0.9727 -11.8707 -0.8119 37 1 1.5118 -13.9722 -1.9739 38 1 3.6380 -15.1238 -1.5162 39 1 5.2349 -14.1742 0.0978 40 1 4.7101 -12.0684 1.2582 41 1 0.7871 -9.5164 0.4652 42 1 1.6969 -10.1442 -0.9356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837856423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:33 Heat of formation + Delta-G solvation = -80.739119 kcal Electronic energy + Delta-G solvation = -25352.882767 eV Core-core repulsion = 21491.202931 eV Total energy + Delta-G solvation = -3861.679836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12135 -40.09146 -38.31038 -37.73741 -36.14861 -34.03000 -33.15717 -31.59518 -31.40683 -29.57964 -28.94106 -28.18716 -24.90151 -23.90220 -23.33165 -21.88278 -20.95796 -20.05158 -19.61230 -18.13518 -18.05809 -17.91501 -16.58525 -16.42856 -15.92075 -15.82440 -15.36291 -14.87325 -14.83028 -14.48756 -14.16599 -14.06398 -13.90422 -13.70242 -13.27113 -13.09907 -12.97323 -12.49541 -12.27190 -12.10318 -11.89302 -11.79879 -11.64229 -11.48599 -11.20706 -11.16113 -11.15375 -10.47328 -10.45653 -10.42478 -10.30483 -10.06848 -9.63013 -9.20582 -8.55512 -8.11805 -8.10892 -6.52269 -3.94410 1.11359 1.12355 2.19951 2.58875 3.11504 3.21925 3.27603 3.31781 3.69122 3.70823 4.02000 4.07041 4.19277 4.54688 4.60421 4.68608 4.78676 4.87037 4.88780 4.91032 5.05139 5.12477 5.14799 5.19151 5.24952 5.41819 5.46745 5.50024 5.58407 5.65586 5.65822 5.72215 5.79837 5.90980 6.02394 6.13344 6.29282 6.46293 6.54742 6.62319 6.97438 7.45518 7.76547 7.92711 8.45800 9.04627 9.36662 9.86411 10.64881 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040877 B = 0.002020 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.812198 B =13858.373816 C =14209.155028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.322 6.322 14 C 0.470 3.530 15 O -0.510 6.510 16 C -0.103 4.103 17 H 0.118 0.882 18 C -0.117 4.117 19 C 0.038 3.962 20 N -0.475 5.475 21 C 0.112 3.888 22 C -0.157 4.157 23 C -0.092 4.092 24 C -0.154 4.154 25 C -0.092 4.092 26 C -0.165 4.165 27 C 0.050 3.950 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 -24.841 -0.229 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.018 4.018 13 O -0.236 6.236 14 C 0.312 3.688 15 O -0.398 6.398 16 C -0.124 4.124 17 H 0.136 0.864 18 C -0.155 4.155 19 C -0.088 4.088 20 N -0.188 5.188 21 C 0.013 3.987 22 C -0.178 4.178 23 C -0.110 4.110 24 C -0.173 4.173 25 C -0.111 4.111 26 C -0.186 4.186 27 C -0.076 4.076 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.415 -24.709 0.249 25.102 hybrid contribution -0.114 1.019 -0.579 1.177 sum 4.301 -23.690 -0.330 24.080 Atomic orbital electron populations 1.69613 1.06005 1.28517 1.49560 1.25322 0.95701 0.99900 0.96861 0.85788 0.79222 0.80380 0.78502 1.20256 1.20795 1.19275 1.19725 0.93477 0.81743 1.48252 0.87605 1.41707 1.09381 1.04097 1.63745 1.19308 0.88332 0.84060 0.86053 1.90560 1.13398 1.86781 1.55311 1.22779 0.90857 0.84576 1.03550 1.86545 1.40303 1.14057 1.82659 1.23209 0.88247 0.84813 0.72491 1.90655 1.16711 1.86698 1.45783 1.22183 0.97105 0.90666 1.02401 0.86380 1.22753 1.00950 0.95924 0.95854 1.23355 0.90523 0.92748 1.02159 1.60622 1.20843 1.03454 1.33898 1.19200 0.93601 0.93217 0.92685 1.20948 1.00199 0.98018 0.98643 1.21013 0.96774 0.94578 0.98669 1.21059 0.95100 1.00835 1.00324 1.21001 0.99134 0.95107 0.95845 1.21029 0.96251 0.97799 1.03475 1.23127 0.98946 0.88861 0.96658 0.91602 0.77149 0.89502 0.89488 0.88281 0.89534 0.88834 0.91292 0.85534 0.85975 0.86303 0.86058 0.85569 0.87554 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 9 N -0.55 -13.85 5.29 -10.96 -0.06 -13.91 16 10 C 0.44 10.44 7.86 -10.98 -0.09 10.35 16 11 O -0.58 -15.83 16.08 -14.11 -0.23 -16.06 16 12 C 0.06 1.12 5.94 36.01 0.21 1.34 16 13 O -0.32 -5.80 9.75 -45.89 -0.45 -6.24 16 14 C 0.47 7.09 7.27 36.00 0.26 7.35 16 15 O -0.51 -8.54 15.19 -18.75 -0.28 -8.83 16 16 C -0.10 -1.15 3.44 -89.95 -0.31 -1.46 16 17 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.12 -1.14 6.52 -24.59 -0.16 -1.30 16 19 C 0.04 0.32 5.46 -2.30 -0.01 0.30 16 20 N -0.48 -4.80 5.27 -167.92 -0.89 -5.69 16 21 C 0.11 1.10 5.78 -83.79 -0.48 0.62 16 22 C -0.16 -1.47 8.59 -39.38 -0.34 -1.81 16 23 C -0.09 -0.75 10.04 -39.61 -0.40 -1.15 16 24 C -0.15 -1.19 10.04 -39.55 -0.40 -1.59 16 25 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 26 C -0.16 -1.43 8.66 -39.38 -0.34 -1.77 16 27 C 0.05 0.52 5.58 -2.84 -0.02 0.51 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 29 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 30 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 31 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.51 6.51 -51.93 -0.34 0.18 16 36 H 0.13 1.10 6.78 -52.48 -0.36 0.75 16 37 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.13 0.92 6.42 -52.49 -0.34 0.58 16 41 H 0.11 1.28 6.85 -51.93 -0.36 0.92 16 42 H 0.08 0.76 5.95 -51.93 -0.31 0.45 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -32.42 354.69 -8.89 -41.31 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.33 Total: 9.34 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.70 Total: 2.38 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.22 Total: -42.78 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.96 Total: -31.13 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -8.89 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837856423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.433 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds