Wall clock time and date at job start Tue Mar 31 2020 11:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00248 * 2 1 4 4 H 1.48496 * 109.47200 * 269.99859 * 3 2 1 5 5 H 1.48493 * 109.47114 * 29.99961 * 3 2 1 6 6 H 1.48503 * 109.46950 * 149.99992 * 3 2 1 7 7 C 1.38952 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99665 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99837 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00154 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99925 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.34226 * 117.00147 * 180.02562 * 13 12 10 15 15 O 1.20831 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00153 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.62886 * 300.69790 * 16 14 13 18 18 C 1.55137 * 110.85660 * 63.90991 * 16 14 13 19 19 C 1.54907 * 101.65122 * 154.10773 * 18 16 14 20 20 N 1.47841 * 104.79765 * 322.92428 * 19 18 16 21 21 C 1.39682 * 110.99650 * 146.36531 * 20 19 18 22 22 C 1.38906 * 120.07039 * 202.72073 * 21 20 19 23 23 C 1.38104 * 119.92144 * 179.77186 * 22 21 20 24 24 C 1.38281 * 120.07744 * 0.50505 * 23 22 21 25 25 C 1.38291 * 120.14515 * 359.74543 * 24 23 22 26 26 C 1.38105 * 120.07638 * 0.02562 * 25 24 23 27 27 C 1.47446 * 108.56264 * 24.10210 * 20 19 18 28 28 H 0.97003 * 119.99946 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00314 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47155 * 59.99747 * 12 10 9 31 31 H 1.09005 * 109.46937 * 300.00147 * 12 10 9 32 32 H 1.09003 * 110.98931 * 272.19863 * 18 16 14 33 33 H 1.09003 * 110.99300 * 36.01232 * 18 16 14 34 34 H 1.09007 * 110.36802 * 204.09632 * 19 18 16 35 35 H 1.08994 * 110.37611 * 81.76277 * 19 18 16 36 36 H 1.08006 * 120.04471 * 0.02562 * 22 21 20 37 37 H 1.08006 * 119.96428 * 180.25168 * 23 22 21 38 38 H 1.08002 * 119.93179 * 179.76612 * 24 23 22 39 39 H 1.08003 * 119.96299 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.03335 * 180.02562 * 26 25 24 41 41 H 1.09003 * 109.88448 * 239.59912 * 27 20 19 42 42 H 1.09002 * 110.02507 * 118.49176 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2435 -4.8630 0.0011 13 8 2.1870 -5.9667 0.0016 14 6 1.6740 -7.2070 0.0016 15 8 0.4761 -7.3653 0.0017 16 6 2.5919 -8.4022 0.0016 17 1 3.2388 -8.3895 -0.8757 18 6 3.4341 -8.4519 1.3035 19 6 3.7394 -9.9660 1.4209 20 7 2.5085 -10.6369 0.9515 21 6 2.8095 -11.8320 0.2940 22 6 1.9078 -12.3734 -0.6133 23 6 2.2106 -13.5527 -1.2652 24 6 3.4053 -14.1998 -1.0079 25 6 4.3029 -13.6661 -0.1013 26 6 4.0085 -12.4848 0.5506 27 6 1.7805 -9.7134 0.0621 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 0.0005 30 1 0.6165 -4.9209 -0.8885 31 1 0.6172 -4.9205 0.8914 32 1 4.3530 -7.8754 1.1963 33 1 2.8536 -8.1031 2.1576 34 1 3.9449 -10.2323 2.4578 35 1 4.5834 -10.2333 0.7852 36 1 0.9727 -11.8707 -0.8119 37 1 1.5118 -13.9722 -1.9739 38 1 3.6380 -15.1238 -1.5162 39 1 5.2349 -14.1742 0.0978 40 1 4.7101 -12.0684 1.2582 41 1 0.7871 -9.5164 0.4652 42 1 1.6969 -10.1442 -0.9356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837856423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:32 Heat of formation + Delta-G solvation = -100.380640 kcal Electronic energy + Delta-G solvation = -25353.734488 eV Core-core repulsion = 21491.202931 eV Total energy + Delta-G solvation = -3862.531557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12476 -41.11172 -40.05717 -38.60263 -37.51825 -36.04910 -33.94814 -33.42554 -32.22623 -30.55213 -29.92371 -29.31743 -26.70962 -24.97163 -24.00431 -22.74527 -21.65835 -21.45959 -21.04900 -20.09249 -19.11619 -18.74817 -17.97518 -17.77412 -17.44700 -16.67124 -16.56500 -16.10881 -15.88051 -15.78579 -15.50058 -15.32804 -14.86331 -14.60520 -14.36978 -14.19157 -13.84068 -13.70022 -13.68064 -13.56975 -13.10386 -12.94720 -12.71453 -12.54614 -12.48524 -12.19440 -12.12712 -12.01610 -11.90305 -11.78824 -11.58969 -11.56200 -10.76121 -10.53341 -10.13389 -9.81788 -8.79337 -8.53601 -6.04362 0.47800 0.51122 0.99300 1.29079 1.35237 1.43883 1.56734 1.85262 2.28324 2.62498 2.98012 3.03529 3.11842 3.19577 3.39341 3.65035 3.91267 3.98997 4.07664 4.10052 4.11825 4.13157 4.18328 4.19845 4.33828 4.44682 4.60504 4.60917 4.72303 4.79523 4.84900 4.91531 4.98333 5.10797 5.23787 5.28235 5.35922 5.54388 5.69706 5.83952 5.87382 5.93245 6.32383 6.42765 6.56098 7.01381 7.38107 7.91318 8.63324 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040877 B = 0.002020 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.812198 B =13858.373816 C =14209.155028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.070 3.930 13 O -0.338 6.338 14 C 0.472 3.528 15 O -0.528 6.528 16 C -0.099 4.099 17 H 0.136 0.864 18 C -0.115 4.115 19 C 0.043 3.957 20 N -0.485 5.485 21 C 0.093 3.907 22 C -0.174 4.174 23 C -0.099 4.099 24 C -0.158 4.158 25 C -0.097 4.097 26 C -0.172 4.172 27 C 0.057 3.943 28 H 0.281 0.719 29 H 0.400 0.600 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.087 0.913 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -25.910 -0.414 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.007 4.007 13 O -0.253 6.253 14 C 0.316 3.684 15 O -0.417 6.417 16 C -0.119 4.119 17 H 0.154 0.846 18 C -0.153 4.153 19 C -0.082 4.082 20 N -0.198 5.198 21 C -0.005 4.005 22 C -0.194 4.194 23 C -0.118 4.118 24 C -0.177 4.177 25 C -0.116 4.116 26 C -0.193 4.193 27 C -0.069 4.069 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.106 0.894 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.062 -25.803 0.065 26.295 hybrid contribution -0.343 1.241 -0.531 1.392 sum 4.719 -24.562 -0.466 25.016 Atomic orbital electron populations 1.69672 1.06964 1.29747 1.49107 1.26145 0.96603 1.02645 0.95649 0.84840 0.77893 0.76293 0.78794 1.19453 1.19454 1.19498 1.19725 0.92959 0.83347 1.50682 0.89698 1.41749 1.09564 1.04217 1.63980 1.20085 0.88085 0.85349 0.84172 1.90523 1.15384 1.87684 1.56769 1.22536 0.90219 0.82606 1.05332 1.86552 1.40631 1.14888 1.83250 1.23930 0.88658 0.84476 0.71362 1.90645 1.17734 1.86689 1.46631 1.22325 0.96833 0.88848 1.03900 0.84626 1.22770 1.00731 0.97224 0.94597 1.23394 0.90358 0.91298 1.03157 1.60650 1.21662 1.03593 1.33938 1.19357 0.94410 0.93329 0.93423 1.21088 1.00313 0.98767 0.99250 1.21282 0.97462 0.94256 0.98780 1.21392 0.94750 1.01443 1.00124 1.21332 1.00001 0.94848 0.95375 1.21252 0.96066 0.98176 1.03803 1.23002 0.98045 0.88703 0.97136 0.90957 0.76583 0.87576 0.87659 0.87613 0.90589 0.87641 0.89934 0.85758 0.84361 0.84258 0.83888 0.84333 0.89433 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.39 13.05 21.66 0.28 -48.11 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.34 -18.87 9.68 84.04 0.81 -18.05 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.45 5.29 -306.97 -1.62 -30.08 16 10 C 0.44 21.13 7.86 87.66 0.69 21.82 16 11 O -0.62 -34.67 16.08 15.74 0.25 -34.42 16 12 C 0.07 2.62 5.94 71.24 0.42 3.04 16 13 O -0.34 -12.11 9.75 -45.03 -0.44 -12.55 16 14 C 0.47 14.03 7.27 71.23 0.52 14.55 16 15 O -0.53 -17.53 15.19 21.95 0.33 -17.20 16 16 C -0.10 -2.13 3.44 -10.36 -0.04 -2.16 16 17 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 18 C -0.12 -2.14 6.52 31.98 0.21 -1.93 16 19 C 0.04 0.66 5.46 86.77 0.47 1.13 16 20 N -0.48 -9.34 5.27 -685.17 -3.61 -12.96 16 21 C 0.09 1.73 5.78 38.21 0.22 1.95 16 22 C -0.17 -3.11 8.59 22.40 0.19 -2.92 16 23 C -0.10 -1.48 10.04 22.25 0.22 -1.25 16 24 C -0.16 -2.10 10.04 22.29 0.22 -1.88 16 25 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 26 C -0.17 -2.67 8.66 22.40 0.19 -2.48 16 27 C 0.06 1.17 5.58 86.64 0.48 1.65 16 28 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 30 H 0.11 3.54 8.13 -2.39 -0.02 3.53 16 31 H 0.11 3.54 8.13 -2.38 -0.02 3.52 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.08 1.05 6.51 -2.39 -0.02 1.03 16 36 H 0.12 2.16 6.78 -2.91 -0.02 2.14 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.14 1.69 6.42 -2.91 -0.02 1.68 16 41 H 0.09 2.13 6.85 -2.39 -0.02 2.11 16 42 H 0.09 1.63 5.95 -2.39 -0.01 1.61 16 Total: -1.00 -69.63 354.69 2.87 -66.76 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.33 Total: 32.38 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.32 Total: 12.36 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -4.95 Total: -91.14 kcal Atomic # 8 Polarization: -64.31 SS G_CDS: 0.15 Total: -64.17 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -69.63 2.87 -66.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837856423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.616 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds